Rw5G048490

Rap1-interacting factor 1 N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011625
Physical Location & Seq
Reverse (-)
84322302 .. 84323647
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048490.1

Sequence Viewer

Length: 708 bp
ATGCTCTTATTCACCCTCCAATGTTATTACCGTGTGCGACAAATGCTGCAGAAGAGGATGATGGTACACAAAAAAAGGGAACACAAAGGAAATAATGATGAAATCCAAAACACTAGATCTTTGAAAAGCGTAAGGCTGATCATGACACCACTGATAGGCATCATGTTGAGTAACTGCGATGTATCTGTCCGCATGTCTTGCTTGAACACATGGTGTTGTCTATGTAATAGACTTGATACCTCTCTGAATGATTCTTCAATGATTAACCGGGTAGTAGACCCTATGTTTGAAGCAGCTTTTCAACTTGATCCTAATGGTTATGATTTTGGCAAGGACAAATCATTGAAGTTCCTGCAGCTCTGGATCTATCGAAGGCCTGGAGGAGTACTAGATATTTGTGTGTACATGTTTGAACTCTACAGGTCATACACACCGAAGGAAAGTGTGTTTAGACTCAGGGGACACTATTCAGAATGGTGTATATATGCTGCCCCCTTTTGTTGTAGTGGTTATGTGCATTGTGGGATTGATGATTATAGTAATCCATGTGCCTCAGGAGCATACTTATGGACTATTGCGACCCAACCAGCCTTTGTAATGTACGTTGTTGCTACACTTTCTCTAGTGTTAGATTTGGATATGCATTTTGAACCTCGCTATGGGCTAACAAGCATGCTAGTCTACTTGGGAATCGAATCTGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Rif1_N

Protein Analysis

235

Amino Acids

27.25

Weight (kDa)

8.22

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 188 - 235 6.3e-08 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 276, 681
AciI CCGC 1 cut(s) 190
AclWI GGATC 2 cut(s) 302, 371
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 4 cut(s) 66, 387, 404, 602
AfiI CCNNNNNNNGG 2 cut(s) 155, 659
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 8 cut(s) 124, 205, 258, 290, 302, 346, 413, 650
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 2 cut(s) 296, 358
AluI AGCT 2 cut(s) 296, 358
AlwI GGATC 2 cut(s) 302, 371
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 46, 293, 355, 488
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp700I GAANNNNTTC 1 cut(s) 699
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 553
BbvI GCAGC 4 cut(s) 33, 305, 367, 475
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 4 cut(s) 114, 389, 623, 677
BfmI CTRYAG 3 cut(s) 47, 353, 418
BglII AGATCT 1 cut(s) 116
BisI GCNGC 4 cut(s) 47, 294, 356, 489
BlsI GCNGC 4 cut(s) 48, 295, 357, 490
BmcAI AGTACT 1 cut(s) 387
Bme1390I CCNGG 2 cut(s) 269, 378
BmrFI CCNGG 2 cut(s) 269, 378
BmsI GCATC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 269
BsaBI GATNNNNATC 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 659
Bse21I CCTNAGG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 155, 659
BseMII CTCAG 2 cut(s) 469, 567
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 4 cut(s) 33, 305, 367, 475
BshFI GGCC 1 cut(s) 376
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 2 cut(s) 155, 659
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 4 cut(s) 116, 138, 307, 363
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 2 cut(s) 468, 566
BspHI TCATGA 1 cut(s) 141
BspMAI CTGCAG 2 cut(s) 51, 357
BspPI GGATC 2 cut(s) 302, 371
BsrGI TGTACA 1 cut(s) 402
BssMI GATC 4 cut(s) 116, 138, 307, 363
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 2 cut(s) 455, 553
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 4 cut(s) 119, 141, 310, 366
BstMBI GATC 4 cut(s) 116, 138, 307, 363
BstMWI GCNNNNNNNGC 3 cut(s) 43, 198, 557
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 3 cut(s) 196, 409, 676
BstSCI CCNGG 2 cut(s) 267, 376
BstSFI CTRYAG 3 cut(s) 47, 353, 418
BstV1I GCAGC 4 cut(s) 33, 305, 367, 475
BstX2I RGATCY 2 cut(s) 116, 363
BstYI RGATCY 2 cut(s) 116, 363
Bsu36I CCTNAGG 1 cut(s) 553
BsuRI GGCC 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 674
CciI TCATGA 1 cut(s) 141
Csp6I GTAC 4 cut(s) 65, 386, 403, 601
CviAII CATG 7 cut(s) 142, 163, 193, 210, 406, 546, 673
CviJI RGCY 6 cut(s) 136, 296, 358, 376, 590, 664
CviKI_1 RGCY 6 cut(s) 136, 296, 358, 376, 590, 664
CviQI GTAC 4 cut(s) 65, 386, 403, 601
DdeI CTNAG 2 cut(s) 455, 553
DpnI GATC 4 cut(s) 118, 140, 309, 365
DpnII GATC 4 cut(s) 116, 138, 307, 363
DraIII CACNNNGTG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 645
FaeI CATG 7 cut(s) 145, 166, 196, 213, 409, 549, 676
FaqI GGGAC 1 cut(s) 474
FatI CATG 7 cut(s) 141, 162, 192, 209, 405, 545, 672
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 2 cut(s) 276, 681
Fnu4HI GCNGC 4 cut(s) 47, 294, 356, 489
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 4 cut(s) 47, 294, 356, 489
FspBI CTAG 4 cut(s) 114, 389, 623, 677
GluI GCNGC 4 cut(s) 47, 294, 356, 489
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 1 cut(s) 376
HapII CCGG 1 cut(s) 268
Hin1II CATG 7 cut(s) 145, 166, 196, 213, 409, 549, 676
HinfI GANTC 4 cut(s) 251, 453, 690, 695
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 4 cut(s) 67, 277, 403, 682
Hpy188I TCNGA 2 cut(s) 246, 472
Hpy188III TCNNGA 3 cut(s) 142, 361, 555
Hpy8I GTNNAC 4 cut(s) 67, 277, 403, 682
HpyAV CCTTC 2 cut(s) 366, 430
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 4 cut(s) 49, 355, 517, 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 198, 557
HpyF3I CTNAG 2 cut(s) 455, 553
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 7 cut(s) 145, 166, 196, 213, 409, 549, 676
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 116, 138, 307, 363
LmnI GCTCC 1 cut(s) 557
LpnPI CCDG 9 cut(s) 281, 346, 363, 365, 390, 406, 442, 540, 600
Lsp1109I GCAGC 4 cut(s) 33, 305, 367, 475
LweI GCATC 1 cut(s) 168
MaeI CTAG 4 cut(s) 114, 389, 623, 677
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 170
MalI GATC 4 cut(s) 118, 140, 309, 365
MboI GATC 4 cut(s) 116, 138, 307, 363
MboII GAAGA 2 cut(s) 64, 246
MflI RGATCY 2 cut(s) 116, 363
MlyI GAGTC 1 cut(s) 447
MnlI CCTC 6 cut(s) 26, 48, 250, 374, 562, 663
Mph1103I ATGCAT 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 565
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 269, 378
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 43, 198, 557
NciI CCSGG 1 cut(s) 269
NdeII GATC 4 cut(s) 116, 138, 307, 363
NlaIII CATG 7 cut(s) 145, 166, 196, 213, 409, 549, 676
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 3 cut(s) 196, 409, 676
PaeI GCATGC 1 cut(s) 676
PagI TCATGA 1 cut(s) 141
PceI AGGCCT 1 cut(s) 376
PciI ACATGT 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 251, 690, 695
PkrI GCNGC 4 cut(s) 48, 295, 357, 490
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PscI ACATGT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PstI CTGCAG 2 cut(s) 51, 357
PsuI RGATCY 2 cut(s) 116, 363
RsaI GTAC 4 cut(s) 66, 387, 404, 602
RsaNI GTAC 4 cut(s) 65, 386, 403, 601
RseI CAYNNNNRTG 1 cut(s) 565
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 4 cut(s) 47, 294, 356, 489
Sau3AI GATC 4 cut(s) 116, 138, 307, 363
ScaI AGTACT 1 cut(s) 387
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 2 cut(s) 269, 378
SetI ASST 6 cut(s) 242, 298, 360, 425, 606, 655
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 3 cut(s) 47, 353, 418
SmiMI CAYNNNNRTG 1 cut(s) 565
SphI GCATGC 1 cut(s) 676
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 1 cut(s) 190
SspMI CTAG 4 cut(s) 114, 389, 623, 677
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 267, 376
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 606
TaqI TCGA 2 cut(s) 370, 693
TatI WGTACW 2 cut(s) 385, 402
TfiI GAWTC 3 cut(s) 251, 690, 695
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 156
TseI GCWGC 4 cut(s) 46, 293, 355, 488
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 1 cut(s) 156
XceI RCATGY 3 cut(s) 196, 409, 676
XmiI GTMKAC 2 cut(s) 276, 681
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 4 cut(s) 114, 389, 623, 677
ZrmI AGTACT 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.