Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011625

Physical Location & Seq

Genomic Coordinates Reverse (-)

76850714 .. 76853019

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG557900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTACCCTCCACCTCTGTCACTAGTTTGGTGAATATGGCTGTTATTAAGCTAGCAACTCTTTTGAGTGAGAACATGAGAGAGTTGTCTCATATGTGGGCACCTCCAATATATAGAAGATTGCTTAGCTCTGATAAGAGAGACAATGATATGTCAGAAAGGTGTCTACTGAAGATTAGATCCACAATCATACCTTCTCCAATAGATCTCTCCAAGGTACTTGTCAGAGATGTAAAGACAAAGTTGCTCACTGGGATGCATGATATGCTATCAATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

93

Amino Acids

10.55

Weight (kDa)

9.65

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011625)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007912
rosa_roxburghii	Rroxscaffold_1G00013790 Rroxscaffold_3G00218570 Rroxscaffold_3G00218580 Rroxscaffold_3G00252300 Rroxscaffold_6G00425440 Rroxscaffold_7G00199340
rosa_rugosa	Rorug01G0267500 Rorug01G0267600 Rorug03G0293600
rosa_samantha	Rh2BG557900 Rh4AG086500 Rh4CG083600 Rh4CG094300 Rh4DG195600 Rh5BG296200 Rh5BG488700 Rh5DG337900 Rh5DG565200
rosa_wichuraiana	Rw5G048490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	219
AhlI	ACTAGT	1 cut(s)	23
AluBI	AGCT	2 cut(s)	52, 129
AluI	AGCT	2 cut(s)	52, 129
Alw26I	GTCTC	2 cut(s)	93, 135
AlwI	GGATC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	43
AsuNHI	GCTAGC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	93, 135
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 53
BglII	AGATCT	1 cut(s)	205
BlpI	GCTNAGC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	93, 135
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	179, 205
Bsp1720I	GCTNAGC	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	102
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	179, 205
BssT1I	CCWWGG	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	182, 208
BstMAI	GTCTC	2 cut(s)	93, 135
BstMBI	GATC	2 cut(s)	179, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	179, 205
BstYI	RGATCY	2 cut(s)	179, 205
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	76, 260
CviJI	RGCY	3 cut(s)	41, 52, 129
CviKI_1	RGCY	3 cut(s)	41, 52, 129
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	181, 207
DpnII	GATC	2 cut(s)	179, 205
Eco130I	CCWWGG	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	79, 263
FatI	CATG	2 cut(s)	75, 259
FauNDI	CATATG	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	166
FokI	GGATG	1 cut(s)	268
FspBI	CTAG	2 cut(s)	24, 53
Hin1II	CATG	2 cut(s)	79, 263
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	133, 157, 227
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	79, 263
Kzo9I	GATC	2 cut(s)	179, 205
LpnPI	CCDG	1 cut(s)	237
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	24, 53
MaeIII	GTNAC	2 cut(s)	3, 19
MalI	GATC	2 cut(s)	181, 207
MboI	GATC	2 cut(s)	179, 205
MboII	GAAGA	2 cut(s)	129, 184
MflI	RGATCY	2 cut(s)	179, 205
MhlI	GDGCHC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	19, 25, 114
Mph1103I	ATGCAT	1 cut(s)	261
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	265
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	2 cut(s)	179, 205
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	79, 263
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	179, 205
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	179, 205
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	7 cut(s)	17, 54, 106, 131, 164, 196, 219
SfaNI	GCATC	1 cut(s)	246
SgeI	CNNG	7 cut(s)	36, 65, 88, 226, 233, 264, 272
SmiMI	CAYNNNNRTG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	23
SspMI	CTAG	2 cut(s)	24, 53
StyI	CCWWGG	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	2 cut(s)	24, 53
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.