Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Reverse (-)

37974081 .. 37977110

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0267600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAAAGTTAACACACATGATGAATCTTTGTTGTGTCTTGTTCAGTAATTTAGAGGAGGAATCTGACAAGAAAGATGGAAATGAGCCAACAATGCACTGGTGGGCAACATTCATCATTATGATCTGTGGATTTGCGGTCTTCATTGATCCTTTGTTCTGTTATGTCTATGTTACGAAAAGGGACGAAATGTGCATCTCCTCCGATCCGAAAGCGGTGTGGGCATATTTTGGTCTGCGAACAGCCATTGATGTCTGTTATTTTATCGATATTATCGTTTTCTTATGTGGACGTGAGGGTAAGAAATTTGGGGCATGCTGCTGGAAGCAGAAAAATGATCAAAAGTCGACAGTAATCGAAAAATGTTACTTGTTGCGTCGCATTTTGGTCGCCCTTCCCATTCCAGAGGTACTCGTGGTCTGTGCATCATACAAGGACTTTGATATATTTTATGCTATCTTTATTATTGTCCCTTTCCAATATACGCTACGGGTATATCTCATTTATGGATACGAAAGTTGGCAACTTATCGACGATACAACACGAAGCTGGCTTAAACCGTTGTCGGATTTGCTTCCATTCATCCTTGCTTCTTATCTATTTGGAGCGTTGTGGTACCGTCTTGCTATACAAAGAGAAACAGATTGTTGGAAGTCACACTGTGATCTTGGAAGTGTTAACTGTACAGGAATTACAGACTTTAAATGTGGCACCAGTTGGAACGTGACCAATATCACGTATTTGCAAGAATTGTGCCCTACAGTCAATGAAAATAAAAAAGTTTTTGACTTTGGTATATATCTTTATGCTCTTCAATCTAATTCCACAAGTTCATCCAATCTTCCACAAAGGATCTCGCAATCTTCTTGGTGGGCGCTACGGAATCTCAGTTCTTTTGGTTCAAATCTCAATACCAGCATGCATACCTTGGAAATCTACTTTTCAATTTTGATATCTATAAGTGGCATGGTGCTATTTTTAGTATATCTTAATGCAACAGTAAAGGGTTTTCAGAGCAAATATAAAAAGTTTAAGGGAAAAGATTGGCCAAAATGTAAATGCTCGATGCCCTGGCCCTGTGGCCGAAGCAGCGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

366

Amino Acids

42.19

Weight (kDa)

8.42

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	615
AccB1I	GGYRCC	2 cut(s)	615, 710
AccI	GTMKAC	1 cut(s)	347
AciI	CCGC	3 cut(s)	137, 215, 1092
AclWI	GGATC	3 cut(s)	143, 200, 860
AcoI	YGGCCR	2 cut(s)	1046, 1081
AcsI	RAATTY	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	3 cut(s)	411, 617, 685
AgsI	TTSAA	3 cut(s)	815, 903, 945
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	1070
AloI	GAACNNNNNNTCC	2 cut(s)	874, 906
AluBI	AGCT	1 cut(s)	549
AluI	AGCT	1 cut(s)	549
AlwI	GGATC	3 cut(s)	143, 200, 860
AoxI	GGCC	3 cut(s)	1046, 1073, 1081
ApeKI	GCWGC	2 cut(s)	318, 1089
ApoI	RAATTY	1 cut(s)	305
Asp718I	GGTACC	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	2 cut(s)	1074, 1094
AvaII	GGWCC	1 cut(s)	1094
BaeGI	GKGCMC	1 cut(s)	758
BaeI	ACNNNNGTAYC	2 cut(s)	502, 535
BalI	TGGCCA	1 cut(s)	1048
BanI	GGYRCC	2 cut(s)	615, 710
BauI	CACGAG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	1 cut(s)	1072
BciVI	GTATCC	1 cut(s)	503
BclI	TGATCA	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	319, 1090
BlsI	GCNGC	2 cut(s)	320, 1091
Bme1390I	CCNGG	1 cut(s)	1072
Bme18I	GGWCC	1 cut(s)	1094
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	1074, 1094
BmiI	GGNNCC	2 cut(s)	617, 712
BmrFI	CCNGG	1 cut(s)	1072
BmsI	GCATC	3 cut(s)	204, 434, 1056
BpiI	GAAGAC	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	267
BsaAI	YACGTR	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	927, 1070
Bse1I	ACTGG	2 cut(s)	104, 714
BseBI	CCWGG	1 cut(s)	1072
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	927, 1070
BseGI	GGATG	2 cut(s)	582, 833
BseMII	CTCAG	1 cut(s)	901
BseNI	ACTGG	2 cut(s)	104, 714
BseRI	GAGGAG	2 cut(s)	71, 190
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	3 cut(s)	1048, 1075, 1083
BshNI	GGYRCC	2 cut(s)	615, 710
BshVI	ATCGAT	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	197, 455
BsmFI	GGGAC	2 cut(s)	197, 455
BsnI	GGCC	3 cut(s)	1048, 1075, 1083
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	683
Bsp143I	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
BspACI	CCGC	3 cut(s)	137, 215, 1092
BspANI	GGCC	3 cut(s)	1048, 1075, 1083
BspCNI	CTCAG	1 cut(s)	900
BspDI	ATCGAT	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	617, 712
BspPI	GGATC	3 cut(s)	143, 200, 860
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	2 cut(s)	615, 710
BsrGI	TGTACA	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	104, 714
BssECI	CCNNGG	2 cut(s)	927, 1070
BssMI	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	927
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	1072
Bst4CI	ACNGT	7 cut(s)	352, 561, 620, 662, 683, 763, 1000
Bst6I	CTCTTC	1 cut(s)	816
BstAUI	TGTACA	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	738
BstC8I	GCNNGC	3 cut(s)	316, 551, 920
BstDEI	CTNAG	1 cut(s)	887
BstF5I	GGATG	2 cut(s)	582, 833
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	6 cut(s)	126, 151, 208, 340, 667, 855
BstMBI	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 221, 1089
BstNI	CCWGG	1 cut(s)	1072
BstNSI	RCATGY	2 cut(s)	318, 922
BstSCI	CCNGG	1 cut(s)	1070
BstSFI	CTRYAG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	758
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
Bsu15I	ATCGAT	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	3 cut(s)	1048, 1075, 1083
BsuTUI	ATCGAT	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	582, 833
BtsIMutI	CAGTG	2 cut(s)	97, 658
Cac8I	GCNNGC	3 cut(s)	316, 551, 920
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	2 cut(s)	1074, 1094
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	3 cut(s)	410, 616, 684
CviAII	CATG	4 cut(s)	19, 315, 919, 967
CviJI	RGCY	7 cut(s)	88, 245, 549, 553, 1048, 1075, 1083
CviKI_1	RGCY	7 cut(s)	88, 245, 549, 553, 1048, 1075, 1083
CviQI	GTAC	3 cut(s)	410, 616, 684
DdeI	CTNAG	1 cut(s)	887
DpnI	GATC	6 cut(s)	125, 150, 207, 339, 666, 854
DpnII	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
DraI	TTTAAA	1 cut(s)	703
DraIII	CACNNNGTG	1 cut(s)	662
EaeI	YGGCCR	2 cut(s)	1046, 1081
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	927
Eco32I	GATATC	1 cut(s)	954
Eco47I	GGWCC	1 cut(s)	1094
EcoRII	CCWGG	1 cut(s)	1070
EcoRV	GATATC	1 cut(s)	954
EcoT14I	CCWWGG	1 cut(s)	927
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	4 cut(s)	22, 318, 922, 970
FaqI	GGGAC	2 cut(s)	197, 455
FatI	CATG	4 cut(s)	18, 314, 918, 966
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	319, 1090
FokI	GGATG	2 cut(s)	569, 820
Fsp4HI	GCNGC	2 cut(s)	319, 1090
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	2 cut(s)	319, 1090
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	3 cut(s)	1048, 1075, 1083
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	877
Hin1II	CATG	4 cut(s)	22, 318, 922, 970
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	3 cut(s)	12, 348, 679
HindII	GTYRAC	3 cut(s)	12, 348, 679
HinfI	GANTC	3 cut(s)	25, 62, 883
HpaI	GTTAAC	2 cut(s)	12, 679
Hpy166II	GTNNAC	4 cut(s)	12, 290, 348, 679
Hpy188I	TCNGA	5 cut(s)	67, 205, 210, 568, 1014
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	4 cut(s)	12, 290, 348, 679
Hpy99I	CGWCG	2 cut(s)	381, 536
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	7 cut(s)	352, 561, 620, 662, 683, 763, 1000
HpyCH4IV	ACGT	3 cut(s)	292, 723, 737
HpyCH4V	TGCA	6 cut(s)	97, 195, 425, 745, 922, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 221, 1089
HpyF3I	CTNAG	1 cut(s)	887
HpySE526I	ACGT	3 cut(s)	292, 723, 737
Hsp92II	CATG	4 cut(s)	22, 318, 922, 970
HspAI	GCGC	1 cut(s)	875
KpnI	GGTACC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	2 cut(s)	12, 679
Kzo9I	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	3 cut(s)	204, 434, 1056
MaeII	ACGT	3 cut(s)	292, 723, 737
MaeIII	GTNAC	4 cut(s)	172, 365, 654, 724
MalI	GATC	6 cut(s)	125, 150, 207, 339, 666, 854
MboI	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
MboII	GAAGA	4 cut(s)	133, 803, 833, 855
MflI	RGATCY	1 cut(s)	852
MhlI	GDGCHC	1 cut(s)	758
MlsI	TGGCCA	1 cut(s)	1048
MluCI	AATT	6 cut(s)	49, 305, 690, 749, 820, 945
MluNI	TGGCCA	1 cut(s)	1048
MmeI	TCCRAC	3 cut(s)	546, 629, 698
MnlI	CCTC	5 cut(s)	49, 52, 211, 289, 400
Mox20I	TGGCCA	1 cut(s)	1048
Mph1103I	ATGCAT	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	1048
MseI	TTAA	6 cut(s)	11, 555, 678, 702, 990, 1032
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	1048
MspA1I	CMGCKG	1 cut(s)	1092
MspR9I	CCNGG	1 cut(s)	1072
MvaI	CCWGG	1 cut(s)	1072
MwoI	GCNNNNNNNGC	3 cut(s)	94, 221, 1089
NdeII	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
NlaIII	CATG	4 cut(s)	22, 318, 922, 970
NlaIV	GGNNCC	2 cut(s)	617, 712
NmuCI	GTSAC	2 cut(s)	654, 724
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	2 cut(s)	318, 922
PaeI	GCATGC	2 cut(s)	318, 922
PciSI	GCTCTTC	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	25, 62, 883
PkrI	GCNGC	2 cut(s)	320, 1091
Ppu21I	YACGTR	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	1070
PspGI	CCWGG	1 cut(s)	1070
PspN4I	GGNNCC	2 cut(s)	617, 712
PspPI	GGNCC	2 cut(s)	1074, 1094
PsuI	RGATCY	1 cut(s)	852
RsaI	GTAC	3 cut(s)	411, 617, 685
RsaNI	GTAC	3 cut(s)	410, 616, 684
RseI	CAYNNNNRTG	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	6 cut(s)	11, 555, 678, 702, 990, 1032
SatI	GCNGC	2 cut(s)	319, 1090
Sau3AI	GATC	6 cut(s)	123, 148, 205, 337, 664, 852
Sau96I	GGNCC	2 cut(s)	1074, 1094
ScrFI	CCNGG	1 cut(s)	1072
SduI	GDGCHC	1 cut(s)	758
SetI	ASST	7 cut(s)	295, 411, 551, 726, 740, 929, 1099
SfaNI	GCATC	3 cut(s)	204, 434, 1056
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	1 cut(s)	1094
SmiMI	CAYNNNNRTG	1 cut(s)	119
SphI	GCATGC	2 cut(s)	318, 922
Sse9I	AATT	6 cut(s)	49, 305, 690, 749, 820, 945
SsiI	CCGC	3 cut(s)	137, 215, 1092
StyD4I	CCNGG	1 cut(s)	1070
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	7 cut(s)	352, 561, 620, 662, 683, 763, 1000
TaiI	ACGT	3 cut(s)	295, 726, 740
TaqI	TCGA	5 cut(s)	267, 347, 357, 531, 1064
TasI	AATT	6 cut(s)	49, 305, 690, 749, 820, 945
TatI	WGTACW	1 cut(s)	683
TfiI	GAWTC	3 cut(s)	25, 62, 883
Tru1I	TTAA	6 cut(s)	11, 555, 678, 702, 990, 1032
Tru9I	TTAA	6 cut(s)	11, 555, 678, 702, 990, 1032
TscAI	CASTG	2 cut(s)	104, 665
TseFI	GTSAC	2 cut(s)	654, 724
TseI	GCWGC	2 cut(s)	318, 1089
Tsp45I	GTSAC	2 cut(s)	654, 724
TspDTI	ATGAA	6 cut(s)	38, 103, 133, 571, 783, 822
TspGWI	ACGGA	1 cut(s)	895
TspRI	CASTG	2 cut(s)	104, 665
VpaK11BI	GGWCC	1 cut(s)	1094
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	2 cut(s)	318, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.