Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

56515360 .. 56518461

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCTGCAGTACAAAGACACAGCTGAAGCTGCTGTTGCTGGGGTGAGAAACATTGTTGATTCTTGCATTCGATCGCAGACAGTTAAGCGACTCATCTACACTGCAAGCATACTTTCTATGTCGCCGAGAAAGGATGATGGAGTTGGATTCAGACCCTTACTTGATGAGTCATGTTGGACACCACTTGATGCCTCATCTACTTATGGCAATGCTTTCACGATGGGGTACATTAAATCAAAGACCTTAGCTGAGAAAGCAGTGCTGAGCCACAATGACTTTGATGATAGTAAATTAGAAGTGGTAACTCTTCCTTGTGGCTTAGTGGGAGGAGAAAGTCTTCTTTCATATTTGCCTGCAAGTGTGGGAGTGATTCTGGCACAACTTACTGGGGACTTGTTTTCTTGCAATACCTTAAAATTCATGCAAGAATATATGGGATCAGTTCCTCTGGTGCACATTGATGATGTTTGCCAAGCACATATCTTCTGCATGGAACAGCCATCAATGAAAGGCAGATTCTGTTGTGCAGTTGCCTGTTACTCTATCAAAGAAATTGCAATATACTTCCAAGAAACTTACCCGGAATACAAGATACAAAAAGAATTGACTGAAGGGCCTGAAGAAGGAAGCCAAAGTGATTTCAGTAAGATGAAGAAGATGGGCTTTGAGTATAAGTATGGCATGAAGGAGATACTAGATGACAGTGTAGCATGGGCAAAGAAGTTAAATGGGAGTTCTCTTTCTCAATACAAGGGCATACGTGAAGCAGCTGTTGCTGGGGGATATCTTAAATCGAAGATCTTAGCTGAGAAAGCAGTGCTGAGCTATCATGGGAAATTAGAAGTGGTAACTCTTCCTTGTGGCTTAGTGGGAGGAGAAAGTATTCTTTCATATTTGCCTATAAAGAAAGTCTTTTCCATATTTGCCTATAAGCCTGGGAGCGATTCTGTCACAACTTACTGGGGACTTATTTTCTGGCAATTCATTAAAACTTCTGCAAGAATATTGACTCAAGGGCGACAAGAGGGAAGCAAAGGTGACTTCAGCAAGCTGATGAAGATGGGTTTTGAGTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

360

Amino Acids

39.77

Weight (kDa)

7.91

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	4 cut(s)	45, 630, 639, 1027
AfaI	GTAC	3 cut(s)	11, 227, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	623
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	7 cut(s)	23, 29, 248, 770, 806, 825, 1051
AluI	AGCT	7 cut(s)	23, 29, 248, 770, 806, 825, 1051
Alw21I	GWGCWC	1 cut(s)	456
Alw44I	GTGCAC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	614
ApaLI	GTGCAC	1 cut(s)	452
ApeKI	GCWGC	3 cut(s)	4, 29, 767
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	336, 882
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	55, 1049
BaeGI	GKGCMC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	16, 779
BccI	CCATC	5 cut(s)	131, 214, 508, 652, 1054
BciT130I	CCWGG	1 cut(s)	936
BcnI	CCSGG	1 cut(s)	581
BfaI	CTAG	1 cut(s)	695
BfmI	CTRYAG	1 cut(s)	5
BglII	AGATCT	1 cut(s)	798
BisI	GCNGC	3 cut(s)	5, 30, 768
BlpI	GCTNAGC	2 cut(s)	263, 821
BlsI	GCNGC	3 cut(s)	6, 31, 769
Bme1390I	CCNGG	2 cut(s)	581, 936
BmgT120I	GGNCC	1 cut(s)	614
BmrFI	CCNGG	2 cut(s)	581, 936
BmrI	ACTGGG	2 cut(s)	396, 970
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	2 cut(s)	396, 970
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	244
Bpu1102I	GCTNAGC	2 cut(s)	263, 821
BpuEI	CTTGAG	1 cut(s)	996
BpuMI	CCSGG	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	935
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	391, 965
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	1 cut(s)	935
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	4 cut(s)	240, 254, 798, 812
BseNI	ACTGG	2 cut(s)	391, 965
BseRI	GAGGAG	2 cut(s)	342, 888
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	16, 779
BseYI	CCCAGC	2 cut(s)	38, 776
BsgI	GTGCAG	1 cut(s)	546
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	616
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	581
BslFI	GGGAC	2 cut(s)	404, 978
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmFI	GGGAC	2 cut(s)	404, 978
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	71, 437, 798
Bsp1720I	GCTNAGC	2 cut(s)	263, 821
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	4 cut(s)	241, 255, 799, 813
BspMAI	CTGCAG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	391, 965
BssECI	CCNNGG	1 cut(s)	935
BssMI	GATC	3 cut(s)	71, 437, 798
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	2 cut(s)	82, 704
Bst6I	CTCTTC	2 cut(s)	312, 858
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	106, 354, 1049
BstDEI	CTNAG	8 cut(s)	244, 249, 263, 319, 802, 807, 821, 865
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	74, 440, 801
BstMBI	GATC	3 cut(s)	71, 437, 798
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 35, 254, 773, 812
BstNI	CCWGG	1 cut(s)	936
BstSCI	CCNGG	2 cut(s)	579, 934
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	16, 779
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	3 cut(s)	99, 264, 822
BtsIMutI	CAGTG	4 cut(s)	99, 264, 709, 822
Cac8I	GCNNGC	3 cut(s)	106, 354, 1049
CaiI	CAGNNNCTG	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	614
Csp6I	GTAC	3 cut(s)	10, 226, 1072
CviAII	CATG	6 cut(s)	171, 421, 490, 682, 711, 830
CviQI	GTAC	3 cut(s)	10, 226, 1072
DdeI	CTNAG	8 cut(s)	244, 249, 263, 319, 802, 807, 821, 865
DpnI	GATC	3 cut(s)	73, 439, 800
DpnII	GATC	3 cut(s)	71, 437, 798
Eam1104I	CTCTTC	2 cut(s)	312, 858
EarI	CTCTTC	2 cut(s)	312, 858
Eco32I	GATATC	1 cut(s)	785
Eco57I	CTGAAG	4 cut(s)	45, 630, 639, 1027
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	934
EcoRV	GATATC	1 cut(s)	785
FaeI	CATG	6 cut(s)	174, 424, 493, 685, 714, 833
FalI	AAGNNNNNCTT	4 cut(s)	647, 679, 896, 928
FaqI	GGGAC	2 cut(s)	404, 978
FatI	CATG	6 cut(s)	170, 420, 489, 681, 710, 829
Fnu4HI	GCNGC	3 cut(s)	5, 30, 768
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	5, 30, 768
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	3 cut(s)	5, 30, 768
GsaI	CCCAGC	2 cut(s)	42, 780
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	6 cut(s)	174, 424, 493, 685, 714, 833
HinfI	GANTC	8 cut(s)	59, 90, 147, 167, 370, 516, 944, 1009
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	2 cut(s)	55, 1049
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	605, 617, 679
HpyCH4III	ACNGT	2 cut(s)	82, 704
HpyCH4IV	ACGT	1 cut(s)	760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 35, 254, 773, 812
HpyF3I	CTNAG	8 cut(s)	244, 249, 263, 319, 802, 807, 821, 865
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	6 cut(s)	174, 424, 493, 685, 714, 833
Kzo9I	GATC	3 cut(s)	71, 437, 798
LmnI	GCTCC	1 cut(s)	939
Lsp1109I	GCAGC	2 cut(s)	16, 779
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	5 cut(s)	301, 536, 847, 949, 1037
MalI	GATC	3 cut(s)	73, 439, 800
MboI	GATC	3 cut(s)	71, 437, 798
MboII	GAAGA	9 cut(s)	299, 329, 475, 632, 664, 667, 808, 845, 1069
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	6 cut(s)	290, 416, 552, 602, 836, 980
MlyI	GAGTC	3 cut(s)	84, 176, 1003
MmeI	TCCRAC	2 cut(s)	124, 155
MnlI	CCTC	5 cut(s)	202, 320, 456, 866, 1018
MroXI	GAANNNNTTC	2 cut(s)	336, 882
MseI	TTAA	6 cut(s)	84, 231, 413, 725, 789, 987
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	2 cut(s)	23, 770
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	581, 936
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	936
MwoI	GCNNNNNNNGC	5 cut(s)	29, 35, 254, 773, 812
NciI	CCSGG	1 cut(s)	581
NdeII	GATC	3 cut(s)	71, 437, 798
NlaIII	CATG	6 cut(s)	174, 424, 493, 685, 714, 833
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	949, 1037
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	2 cut(s)	336, 882
PfeI	GAWTC	5 cut(s)	59, 147, 370, 516, 944
PkrI	GCNGC	3 cut(s)	6, 31, 769
Ple19I	CGATCG	1 cut(s)	74
PleI	GAGTC	3 cut(s)	84, 175, 1003
PpsI	GAGTC	3 cut(s)	84, 175, 1003
Ppu21I	YACGTR	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	934
PspFI	CCCAGC	2 cut(s)	38, 776
PspGI	CCWGG	1 cut(s)	934
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	798
PvuI	CGATCG	1 cut(s)	74
PvuII	CAGCTG	2 cut(s)	23, 770
RsaI	GTAC	3 cut(s)	11, 227, 1073
RsaNI	GTAC	3 cut(s)	10, 226, 1072
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	84, 231, 413, 725, 789, 987
SatI	GCNGC	3 cut(s)	5, 30, 768
Sau3AI	GATC	3 cut(s)	71, 437, 798
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	3 cut(s)	84, 176, 1003
ScrFI	CCNGG	2 cut(s)	581, 936
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	1011
SmoI	CTYRAG	1 cut(s)	1011
Sse9I	AATT	6 cut(s)	290, 416, 552, 602, 836, 980
SspI	AATATT	1 cut(s)	1005
SspMI	CTAG	1 cut(s)	695
StyD4I	CCNGG	2 cut(s)	579, 934
TaaI	ACNGT	2 cut(s)	82, 704
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	2 cut(s)	70, 794
TasI	AATT	6 cut(s)	290, 416, 552, 602, 836, 980
TatI	WGTACW	2 cut(s)	9, 1071
TfiI	GAWTC	5 cut(s)	59, 147, 370, 516, 944
Tru1I	TTAA	6 cut(s)	84, 231, 413, 725, 789, 987
Tru9I	TTAA	6 cut(s)	84, 231, 413, 725, 789, 987
TscAI	CASTG	4 cut(s)	106, 264, 709, 822
TseFI	GTSAC	2 cut(s)	949, 1037
TseI	GCWGC	3 cut(s)	4, 29, 767
Tsp45I	GTSAC	2 cut(s)	949, 1037
TspDTI	ATGAA	8 cut(s)	333, 409, 521, 665, 698, 879, 973, 1070
TspRI	CASTG	4 cut(s)	106, 264, 709, 822
VneI	GTGCAC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	621
XapI	RAATTY	1 cut(s)	416
XmnI	GAANNNNTTC	2 cut(s)	336, 882
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.