FvH4_5g04260

Anthocyanidin reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001687
Physical Location & Seq
Forward (+)
2537456 .. 2539228
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04260.t1

Sequence Viewer

Length: 888 bp
ATGGGGAAGAACAAAGTCTCTAGAGTTTGTGTTACAGGTGGTTCTGGATATATTGGTTGCTGGCTTGTCAAAACGCTCCTCGAGAAGGGGCACACAGTCCATGCCACTCTCAGAAACTTAGAGGATGAATCAAAGGTAGGCCTTCTGAAGTCTCTCCCCAATGCAGACACTAATTTGCTGCTGTTCGATGCTGATATATACAATCCTAATGACTTCAAGCCTGCTATTGAGGGGTGTGAGTTTGTTTTTCATCTTGCAACTCCTATGCAACATACTTCCCAAAGCTCCCAGTACAAGGACACAGCTGAAGCTGCTATTGCTGGGGTGAGAAGCATTGCAGATTCTTGCATTCAATCGCAGACAGTTAAGCGACTGATCTACACTGCAAGCATACTTTCTATGTCGCCAAGAAATGATGATGGAGTTGGATTCAGACCCTTACTTGATGAGTCATGTTGGACACCCCTTGATGCCTCATCTACTTATGGAAATGAGTTCACTTTGGGGTATATTAAATTAAAGACCTTAGCTGAGAAAGCAGTGCTGAGCTACAATGACTTTGGTGATAGTAAATTAGAAGTGGTAACTCTTCCTTGTGGCTTAGTGGGAGGAGAAAGTCTTCTTTCATATTTGCCTTTAAGTGTGAGAGTAATTCTGGCACAACTTACTGGGGACATGTTTTCTTGCGATGGCTTAAACTTAATGCAAGAATTTATGGGATCAGTTCCTCTGGTGCACATTGATGATGTTTGCCGAGCACATATCTTCTGCATGGAACAGCCATCAATGAAAGGCAGATTCTGTTGTGCAGTTGCGTGTCACTCTATCAAAGAAATTGCAATATACTTCCAAGAAACTTACCCAGAATACAAGATACATAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

296

Amino Acids

32.5

Weight (kDa)

5.51

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 127 4.9e-09 NmrA-like family
Epimerase PF01370 9 - 262 1.9e-18 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 11 - 208 5.2e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 11 - 129 1.2e-10 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 11 - 206 3.1e-07 Male sterility protein
NAD_binding_10 PF13460 13 - 132 4.6e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 2 cut(s) 167, 327
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 85, 295
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 2 cut(s) 217, 353
AluBI AGCT 5 cut(s) 285, 305, 311, 530, 549
AluI AGCT 5 cut(s) 285, 305, 311, 530, 549
Alw21I GWGCWC 2 cut(s) 738, 760
Alw26I GTCTC 2 cut(s) 22, 156
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 1 cut(s) 727
AlwNI CAGNNNCTG 1 cut(s) 801
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 139
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 2 cut(s) 178, 311
ApoI RAATTY 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 618
AsuHPI GGTGA 2 cut(s) 337, 575
AvaI CYCGRG 1 cut(s) 80
BaeGI GKGCMC 2 cut(s) 93, 738
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 2 cut(s) 738, 760
BbvI GCAGC 2 cut(s) 165, 298
BccI CCATC 3 cut(s) 413, 683, 790
BcoDI GTCTC 2 cut(s) 22, 156
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 179, 312
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 2 cut(s) 180, 313
BmeT110I CYCGRG 1 cut(s) 80
BmrI ACTGGG 2 cut(s) 283, 678
BmsI GCATC 2 cut(s) 178, 460
BmuI ACTGGG 2 cut(s) 283, 678
BpiI GAAGAC 1 cut(s) 611
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 545
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 295
Bse1I ACTGG 2 cut(s) 289, 673
Bse3DI GCAATG 1 cut(s) 333
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 85, 295
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 124, 522, 536
BseNI ACTGG 2 cut(s) 289, 673
BseRI GAGGAG 2 cut(s) 68, 624
BseSI GKGCMC 2 cut(s) 93, 738
BseXI GCAGC 2 cut(s) 165, 298
BseYI CCCAGC 1 cut(s) 320
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 2 cut(s) 738, 760
BsiHKCI CYCGRG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 85, 295
BsmAI GTCTC 2 cut(s) 22, 156
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 3 cut(s) 93, 738, 760
Bsp143I GATC 2 cut(s) 375, 719
Bsp1720I GCTNAGC 1 cut(s) 545
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 3 cut(s) 123, 523, 537
BspPI GGATC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 2 cut(s) 289, 673
BssMI GATC 2 cut(s) 375, 719
Bst4CI ACNGT 2 cut(s) 97, 364
Bst6I CTCTTC 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 62, 222, 388
BstDEI CTNAG 6 cut(s) 110, 118, 526, 531, 545, 601
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 378, 722
BstMAI GTCTC 2 cut(s) 22, 156
BstMBI GATC 2 cut(s) 375, 719
BstMWI GCNNNNNNNGC 3 cut(s) 311, 317, 536
BstNSI RCATGY 1 cut(s) 679
BstSLI GKGCMC 2 cut(s) 93, 738
BstV1I GCAGC 2 cut(s) 165, 298
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 2 cut(s) 381, 546
BtsIMutI CAGTG 2 cut(s) 381, 546
Cac8I GCNNGC 3 cut(s) 62, 222, 388
CaiI CAGNNNCTG 1 cut(s) 801
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 101, 453, 676, 772
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 6 cut(s) 110, 118, 526, 531, 545, 601
DpnI GATC 2 cut(s) 377, 721
DpnII GATC 2 cut(s) 375, 719
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 141
Eco57I CTGAAG 2 cut(s) 167, 327
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 83
FaeI CATG 4 cut(s) 104, 456, 679, 775
FaqI GGGAC 1 cut(s) 686
FatI CATG 4 cut(s) 100, 452, 675, 771
Fnu4HI GCNGC 2 cut(s) 179, 312
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 179, 312
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 179, 312
GsaI CCCAGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 4 cut(s) 104, 456, 679, 775
HinfI GANTC 5 cut(s) 128, 341, 429, 449, 798
HphI GGTGA 2 cut(s) 337, 575
Hpy166II GTNNAC 2 cut(s) 498, 736
Hpy188I TCNGA 3 cut(s) 113, 147, 434
Hpy188III TCNNGA 3 cut(s) 21, 45, 82
Hpy8I GTNNAC 2 cut(s) 498, 736
HpyAV CCTTC 2 cut(s) 79, 152
HpyCH4III ACNGT 2 cut(s) 97, 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 317, 536
HpyF3I CTNAG 6 cut(s) 110, 118, 526, 531, 545, 601
Hsp92II CATG 4 cut(s) 104, 456, 679, 775
Kzo9I GATC 2 cut(s) 375, 719
LmnI GCTCC 2 cut(s) 81, 290
Lsp1109I GCAGC 2 cut(s) 165, 298
LweI GCATC 2 cut(s) 178, 460
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 31, 583, 818
MalI GATC 2 cut(s) 377, 721
MboI GATC 2 cut(s) 375, 719
MboII GAAGA 4 cut(s) 19, 581, 611, 757
MhlI GDGCHC 3 cut(s) 93, 738, 760
MluCI AATT 6 cut(s) 172, 515, 572, 651, 710, 834
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 2 cut(s) 406, 437
MnlI CCTC 6 cut(s) 89, 115, 223, 484, 602, 738
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 6 cut(s) 366, 513, 518, 638, 695, 701
MslI CAYNNNNRTG 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 311, 317, 536
NdeII GATC 2 cut(s) 375, 719
NlaIII CATG 4 cut(s) 104, 456, 679, 775
NmeAIII GCCGAG 1 cut(s) 779
NmuCI GTSAC 1 cut(s) 818
NspI RCATGY 1 cut(s) 679
PaeR7I CTCGAG 1 cut(s) 80
PceI AGGCCT 1 cut(s) 141
PciI ACATGT 1 cut(s) 675
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 128, 341, 429, 798
PkrI GCNGC 2 cut(s) 180, 313
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PscI ACATGT 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 801
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 6 cut(s) 366, 513, 518, 638, 695, 701
SatI GCNGC 2 cut(s) 179, 312
Sau3AI GATC 2 cut(s) 375, 719
SchI GAGTC 1 cut(s) 458
SduI GDGCHC 3 cut(s) 93, 738, 760
SetI ASST 8 cut(s) 40, 138, 287, 307, 313, 527, 532, 551
SfaNI GCATC 2 cut(s) 178, 460
Sfr274I CTCGAG 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 6 cut(s) 172, 515, 572, 651, 710, 834
SseBI AGGCCT 1 cut(s) 141
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 141
TaaI ACNGT 2 cut(s) 97, 364
TaqI TCGA 2 cut(s) 81, 186
TasI AATT 6 cut(s) 172, 515, 572, 651, 710, 834
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 4 cut(s) 128, 341, 429, 798
Tru1I TTAA 6 cut(s) 366, 513, 518, 638, 695, 701
Tru9I TTAA 6 cut(s) 366, 513, 518, 638, 695, 701
TscAI CASTG 2 cut(s) 388, 546
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 2 cut(s) 178, 311
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 4 cut(s) 141, 239, 615, 803
TspRI CASTG 2 cut(s) 388, 546
VneI GTGCAC 1 cut(s) 734
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 1 cut(s) 710
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 1 cut(s) 679
XhoI CTCGAG 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.