Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

11848886 .. 11851208

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G116400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGATCACATCTTTTCTTTTTGGGGGACCAATTATAAAATGGGCACGCACCCAGATAGCATTCACTGAAAAAAGACAAAGGGCAACAATGGAGAAGAACAAAATTTCTAGAGTTTGTGTTACAGGGGGTGCCGGATTCATTGGTTGTTCGCTTGTTAAAAAGCTCCTAGAGCAGGGCCATACTGTCCATGCCACTCTGAGGAACTTGGAGGATGCATCCAAAGTAGGCCTTCTCAAGTCCCTCCCTAATGCAGACACCAAATTGTTGCTTTTCCAAGCTGACATATATGACCCCAATGAGTTTCAACCAGCCATCCAAGGATGTGAGTTTGTTTTTCACGTGGCCACTCCGATGCAGCATAACAACCAAAGCTCTCAGTACAAGGACACAGCTGAAGCTGCTGTTGCTGGGGTGAGGATTATTGCCGAGTCTTGCATTCGCTCACAGACCGTTAAGCGACTCATCTACACTGCAAGCATCCTTGCTGCGTCACCAAGGAGAGAAGATGGGGTTGGATTCAAACCCTGCCTTGATGAATCATGTTGGACATCTCTTGATGTCTCACCTACTTATTCAACTGAATTTTCAATGGGGTATATCATATCAAAGACATTAGCAGAGAGAGCAGTGCTGAGCTATAATGACATTGATAATGGTAAACTGGAAGTGGTAACACTTCCTTGTGGCTTGGTGGGAGGAGAAACTCTTCTTTCATATTTGTCTGGAAGCGTGGGAGTAGTTATATCACAACTTACCGGGGACTCGTTTGGTTACAATTCATTAAAATTGATGCAAGAAGTTAACGGTTCGGTTCCTCTTGTACACATTGAAGATGTTTGCCAAGCACATATCTTCTGCATGGAACAACCATCCATGAGAGGTAGATTCTGCTGCGCAGTTTCCAGTCTGAACATCAAAGAAATTGCGAGCTACTTCCAAGAAAATTACCCAGAACACAAAATAGCAAAAGAATTCATTGAAGGACCAGAAGAAGGAAGCAAATGTGACTTCAGTAAGCTGATGAAGATGGGTTTTGAGTATAAGTATGGCGTCAAGAATATACTAGATGACAGTGTAGAAAGTGGACGGAGGTTAAGTAGGAGCTCTCATTCTCAACTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

375

Amino Acids

41.28

Weight (kDa)

6.47

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	895
AccB1I	GGYRCC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	3 cut(s)	102, 581, 971
AcuI	CTGAAG	2 cut(s)	414, 994
AcvI	CACGTG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	1050
AfaI	GTAC	2 cut(s)	380, 822
AfiI	CCNNNNNNNGG	3 cut(s)	172, 198, 992
AgsI	TTSAA	6 cut(s)	305, 520, 576, 588, 830, 980
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	9 cut(s)	163, 278, 372, 392, 398, 636, 930, 1018, 1104
AluI	AGCT	9 cut(s)	163, 278, 372, 392, 398, 636, 930, 1018, 1104
Alw21I	GWGCWC	1 cut(s)	1106
Alw26I	GTCTC	1 cut(s)	565
AoxI	GGCC	3 cut(s)	175, 226, 342
ApeKI	GCWGC	4 cut(s)	355, 398, 485, 891
ApoI	RAATTY	3 cut(s)	102, 581, 971
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	3 cut(s)	26, 175, 983
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	3 cut(s)	424, 483, 555
AvaII	GGWCC	2 cut(s)	26, 983
BaeGI	GKGCMC	1 cut(s)	46
BalI	TGGCCA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	1106
BbrPI	CACGTG	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	1106
BbvI	GCAGC	4 cut(s)	367, 385, 472, 878
BccI	CCATC	4 cut(s)	320, 500, 877, 1021
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	757
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	3 cut(s)	108, 167, 1064
BisI	GCNGC	4 cut(s)	356, 399, 486, 892
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	4 cut(s)	357, 400, 487, 893
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	2 cut(s)	26, 983
BmgT120I	GGNCC	3 cut(s)	26, 175, 983
BmiI	GGNNCC	3 cut(s)	27, 130, 813
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	5 cut(s)	202, 224, 342, 486, 780
Bpu1102I	GCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	757
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	1050
BsaJI	CCNNGG	3 cut(s)	316, 494, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	1081, 1111
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 198, 992
Bse1I	ACTGG	2 cut(s)	666, 903
BseDI	CCNNGG	3 cut(s)	316, 494, 756
BseGI	GGATG	6 cut(s)	215, 217, 312, 326, 477, 869
BseLI	CCNNNNNNNGG	3 cut(s)	172, 198, 992
BseMII	CTCAG	3 cut(s)	188, 389, 623
BseNI	ACTGG	2 cut(s)	666, 903
BseRI	GAGGAG	1 cut(s)	711
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	367, 385, 472, 878
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	177, 228, 344
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	1106
BsiSI	CCGG	2 cut(s)	132, 756
BslFI	GGGAC	3 cut(s)	39, 223, 773
BslI	CCNNNNNNNGG	3 cut(s)	172, 198, 992
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	3 cut(s)	39, 223, 773
BsmI	GAATGC	2 cut(s)	59, 435
BsnI	GGCC	3 cut(s)	177, 228, 344
Bsp1286I	GDGCHC	2 cut(s)	46, 1106
Bsp1407I	TGTACA	1 cut(s)	820
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	632
BspANI	GGCC	3 cut(s)	177, 228, 344
BspCNI	CTCAG	3 cut(s)	189, 388, 624
BspLI	GGNNCC	3 cut(s)	27, 130, 813
BspT107I	GGYRCC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	820
BsrI	ACTGG	2 cut(s)	666, 903
BssECI	CCNNGG	3 cut(s)	316, 494, 756
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	1050
BssT1I	CCWWGG	2 cut(s)	316, 494
Bst4CI	ACNGT	4 cut(s)	184, 451, 806, 1073
Bst6I	CTCTTC	1 cut(s)	711
BstACI	GRCGYC	1 cut(s)	1050
BstAUI	TGTACA	1 cut(s)	820
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	46, 475, 928
BstDEI	CTNAG	3 cut(s)	197, 375, 632
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	6 cut(s)	215, 217, 312, 326, 477, 869
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 398, 404, 623
BstSCI	CCNGG	1 cut(s)	755
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	4 cut(s)	367, 385, 472, 878
BsuRI	GGCC	3 cut(s)	177, 228, 344
BtsCI	GGATG	6 cut(s)	215, 217, 312, 326, 477, 869
BtsI	GCAGTG	2 cut(s)	468, 633
BtsIMutI	CAGTG	4 cut(s)	63, 468, 633, 1078
Cac8I	GCNNGC	3 cut(s)	46, 475, 928
CfoI	GCGC	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	26, 175, 983
CseI	GACGC	2 cut(s)	477, 1039
Csp6I	GTAC	2 cut(s)	379, 821
CviAII	CATG	4 cut(s)	188, 540, 859, 874
CviQI	GTAC	2 cut(s)	379, 821
DdeI	CTNAG	3 cut(s)	197, 375, 632
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	1104
Eco130I	CCWWGG	2 cut(s)	316, 494
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	1106
Eco47I	GGWCC	2 cut(s)	26, 983
Eco53kI	GAGCTC	1 cut(s)	1104
Eco57I	CTGAAG	2 cut(s)	414, 994
Eco72I	CACGTG	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	1104
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	971
EcoT14I	CCWWGG	2 cut(s)	316, 494
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	1106
ErhI	CCWWGG	2 cut(s)	316, 494
FaeI	CATG	4 cut(s)	191, 543, 862, 877
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	3 cut(s)	39, 223, 773
FatI	CATG	4 cut(s)	187, 539, 858, 873
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	356, 399, 486, 892
FokI	GGATG	6 cut(s)	202, 224, 299, 333, 464, 856
FriOI	GRGCYC	1 cut(s)	1106
Fsp4HI	GCNGC	4 cut(s)	356, 399, 486, 892
FspBI	CTAG	3 cut(s)	108, 167, 1064
FspI	TGCGCA	1 cut(s)	895
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	4 cut(s)	356, 399, 486, 892
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	177, 228, 344
HapII	CCGG	2 cut(s)	132, 756
HgaI	GACGC	2 cut(s)	477, 1039
HhaI	GCGC	1 cut(s)	896
Hin1I	GRCGYC	1 cut(s)	1050
Hin1II	CATG	4 cut(s)	191, 543, 862, 877
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	7 cut(s)	135, 428, 459, 516, 536, 761, 885
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	2 cut(s)	132, 756
HphI	GGTGA	3 cut(s)	424, 483, 555
Hpy166II	GTNNAC	4 cut(s)	659, 802, 823, 1085
Hpy188I	TCNGA	3 cut(s)	198, 351, 909
Hpy188III	TCNNGA	4 cut(s)	108, 554, 723, 1054
Hpy8I	GTNNAC	4 cut(s)	659, 802, 823, 1085
HpyAV	CCTTC	3 cut(s)	239, 974, 986
HpyCH4III	ACNGT	4 cut(s)	184, 451, 806, 1073
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	7 cut(s)	215, 251, 355, 435, 473, 793, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 398, 404, 623
HpyF3I	CTNAG	3 cut(s)	197, 375, 632
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	1050
Hsp92II	CATG	4 cut(s)	191, 543, 862, 877
HspAI	GCGC	1 cut(s)	894
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	168, 1101
Lsp1109I	GCAGC	4 cut(s)	367, 385, 472, 878
LweI	GCATC	5 cut(s)	202, 224, 342, 486, 780
MaeI	CTAG	3 cut(s)	108, 167, 1064
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	5 cut(s)	118, 489, 670, 770, 1004
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	7 cut(s)	106, 515, 698, 842, 844, 1001, 1036
MhlI	GDGCHC	2 cut(s)	46, 1106
MlsI	TGGCCA	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	3 cut(s)	437, 453, 755
MmeI	TCCRAC	2 cut(s)	493, 524
MnlI	CCTC	8 cut(s)	192, 202, 251, 408, 689, 825, 872, 1083
Mox20I	TGGCCA	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	6 cut(s)	156, 453, 782, 801, 1094, 1123
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	132, 756
MspR9I	CCNGG	1 cut(s)	757
Mva1269I	GAATGC	2 cut(s)	59, 435
MwoI	GCNNNNNNNGC	4 cut(s)	169, 398, 404, 623
NciI	CCSGG	1 cut(s)	757
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	191, 543, 862, 877
NlaIV	GGNNCC	3 cut(s)	27, 130, 813
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	489, 1004
NsbI	TGCGCA	1 cut(s)	895
NsiI	ATGCAT	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	2 cut(s)	59, 435
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	4 cut(s)	135, 516, 536, 885
PkrI	GCNGC	4 cut(s)	357, 400, 487, 893
PleI	GAGTC	3 cut(s)	436, 453, 755
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	3 cut(s)	436, 453, 755
Ppu21I	YACGTR	1 cut(s)	340
PsiI	TTATAA	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	1106
PspCI	CACGTG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	27, 130, 813
PspPI	GGNCC	3 cut(s)	26, 175, 983
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	380, 822
RsaNI	GTAC	2 cut(s)	379, 821
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	1106
SaqAI	TTAA	6 cut(s)	156, 453, 782, 801, 1094, 1123
SatI	GCNGC	4 cut(s)	356, 399, 486, 892
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	26, 175, 983
SchI	GAGTC	3 cut(s)	437, 453, 755
ScrFI	CCNGG	1 cut(s)	757
SduI	GDGCHC	2 cut(s)	46, 1106
SfaNI	GCATC	5 cut(s)	202, 224, 342, 486, 780
SinI	GGWCC	2 cut(s)	26, 983
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SseBI	AGGCCT	1 cut(s)	228
SspMI	CTAG	3 cut(s)	108, 167, 1064
SstI	GAGCTC	1 cut(s)	1106
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	2 cut(s)	316, 494
TaaI	ACNGT	4 cut(s)	184, 451, 806, 1073
TaiI	ACGT	1 cut(s)	342
TatI	WGTACW	2 cut(s)	378, 820
TfiI	GAWTC	4 cut(s)	135, 516, 536, 885
Tru1I	TTAA	6 cut(s)	156, 453, 782, 801, 1094, 1123
Tru9I	TTAA	6 cut(s)	156, 453, 782, 801, 1094, 1123
TscAI	CASTG	4 cut(s)	70, 475, 633, 1078
TseFI	GTSAC	2 cut(s)	489, 1004
TseI	GCWGC	4 cut(s)	355, 398, 485, 891
Tsp45I	GTSAC	2 cut(s)	489, 1004
TspDTI	ATGAA	6 cut(s)	127, 549, 702, 768, 964, 1037
TspGWI	ACGGA	1 cut(s)	1102
TspRI	CASTG	4 cut(s)	70, 475, 633, 1078
VpaK11BI	GGWCC	2 cut(s)	26, 983
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	3 cut(s)	102, 581, 971
XbaI	TCTAGA	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	108, 167, 1064
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.