Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

15176008 .. 15177964

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGAACAAAAACTCTAGAGTTTGTGTTACAGGTGCTTCTGGATTCATTGCCTCTTCACTCGTTGAAAAACTCCTACAGCAGGGCCACACAGTCCACGCCACCCTCAGGAACTTGGATGATGAGTCGAAAGTTGGGCTTCTCAAGTCCCTTCCTAATGCGGACACCAAATTGTTGCTGTTCCAAGCTGACCTATATGACCCTCAAGGGTTTGAGCCTGCCATTGAAGGGTGTGAGTTTGTTTTCCACGTTGCCACTCCAATGCAGCATAACAACCTAAGCACTCAGTACAAGGACACAGATGAAGCTGCTGTTGCTGGGGTGAGAATCATTGCTGATTCCTGCATTCGTTCGCAGACCGTCAAGCGACTCATCTACACTGCAAGCATACTAGCTGCGTCGCCTCGGACAGAAGATGGGGCTGGATTCAAACCCTACGTTGATGAATCATGTTGGACACCCCTTGATGTCTCATTTCCTCATGGCACTGATTTCTCAATGGGGTATATCGTATCAAAGACATTAGCAGAGAAAGCAGTGCTGAGCTATAACGACATTGATGGTGGTAAATTAGAAGCAGTAACTCTTCCTTGTGGCCTAGTAGGAGGAGAAACTCTTCTCCCAAATTCGCCTCTAAGTGTGGGAGTAATTATATCACAACTTACCGGGGACTTGAACGGTTACAATGCATTAAAATTTATGCAAGAAGTTATCGGTTCTGTTCCTCTTGTACACATTGAAGATGTTTGCCGAGCACATATCTTCTGCATGGAACAACCATCGATGAGAGGCAGATTCTGCTGTGCAGTTGCCAGTCCGAGTATCAAAGAAATCGCTGCCTGCTTCCAAGAAAACTACCCGGAATACAAGATAGCAAAAGAATTCGCCGAAGGACCAGAGGAAGGAATCAAATGTGACTTTACTAAGCTGGTGAAGATCGGTTTTGAGTACAAGTATGGTATGAAGAACATACTTGATGACAGTGTTGCAAGCGGAAGGAGCTGCAAAAGTGTAAAAAAACACACTGATGACTACAAGCAGAAGAAGCAAGCAAATTTTGGAGACGAAACACTTTGGTTTCCCGTGGTTGGAGTAAAGGTTCTGCTTCGAGGTCTTTTAATGGTGAAGAACACAAAGTTAAGGGACTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

385

Amino Acids

42.2

Weight (kDa)

5.96

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	161, 993
AcsI	RAATTY	4 cut(s)	625, 695, 881, 1054
AfaI	GTAC	3 cut(s)	290, 732, 950
AfiI	CCNNNNNNNGG	5 cut(s)	82, 108, 228, 902, 1088
AgsI	TTSAA	5 cut(s)	68, 227, 430, 676, 740
AloI	GAACNNNNNNTCC	2 cut(s)	1083, 1115
AluBI	AGCT	6 cut(s)	188, 308, 395, 546, 928, 1002
AluI	AGCT	6 cut(s)	188, 308, 395, 546, 928, 1002
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	2 cut(s)	475, 1056
AlwNI	CAGNNNCTG	1 cut(s)	798
AoxI	GGCC	2 cut(s)	85, 595
ApeKI	GCWGC	5 cut(s)	265, 308, 395, 836, 1002
ApoI	RAATTY	4 cut(s)	625, 695, 881, 1054
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	85, 893
AsuC2I	CCSGG	2 cut(s)	667, 860
AsuHPI	GGTGA	3 cut(s)	334, 943, 1135
AvaII	GGWCC	1 cut(s)	893
AxyI	CCTNAGG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	5 cut(s)	277, 295, 382, 823, 989
BccI	CCATC	3 cut(s)	410, 554, 787
BcnI	CCSGG	2 cut(s)	667, 860
BcoDI	GTCTC	2 cut(s)	475, 1056
BfaI	CTAG	3 cut(s)	18, 392, 599
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	5 cut(s)	266, 309, 396, 837, 1003
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	5 cut(s)	267, 310, 397, 838, 1004
Bme1390I	CCNGG	2 cut(s)	667, 860
Bme18I	GGWCC	1 cut(s)	893
BmgT120I	GGNCC	2 cut(s)	85, 893
BmrFI	CCNGG	2 cut(s)	667, 860
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	128, 189
BpuMI	CCSGG	2 cut(s)	667, 860
Bsa29I	ATCGAT	1 cut(s)	782
BsaJI	CCNNGG	3 cut(s)	404, 666, 1083
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 108, 228, 902, 1088
Bse1I	ACTGG	1 cut(s)	813
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	48, 330
BseCI	ATCGAT	1 cut(s)	782
BseDI	CCNNGG	3 cut(s)	404, 666, 1083
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	5 cut(s)	82, 108, 228, 902, 1088
BseMI	GCAATG	2 cut(s)	48, 330
BseMII	CTCAG	3 cut(s)	121, 299, 533
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	5 cut(s)	277, 295, 382, 823, 989
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	2 cut(s)	87, 597
BshVI	ATCGAT	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	666, 860
BslFI	GGGAC	2 cut(s)	133, 683
BslI	CCNNNNNNNGG	5 cut(s)	82, 108, 228, 902, 1088
BsmAI	GTCTC	2 cut(s)	475, 1056
BsmBI	CGTCTC	1 cut(s)	1056
BsmFI	GGGAC	2 cut(s)	133, 683
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	87, 597
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	1 cut(s)	936
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	2 cut(s)	161, 993
BspANI	GGCC	2 cut(s)	87, 597
BspCNI	CTCAG	3 cut(s)	120, 298, 534
BspDI	ATCGAT	1 cut(s)	782
BsrDI	GCAATG	2 cut(s)	48, 330
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	3 cut(s)	404, 666, 1083
BssMI	GATC	1 cut(s)	936
Bst4CI	ACNGT	4 cut(s)	94, 361, 680, 983
Bst6I	CTCTTC	3 cut(s)	61, 591, 621
BstAPI	GCANNNNNTGC	1 cut(s)	798
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	5 cut(s)	219, 385, 841, 991, 1050
BstDEI	CTNAG	6 cut(s)	107, 278, 285, 542, 635, 924
BstDSI	CCRYGG	1 cut(s)	1083
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	939
BstMAI	GTCTC	2 cut(s)	475, 1056
BstMBI	GATC	1 cut(s)	936
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 533, 798, 999, 1045
BstSCI	CCNGG	2 cut(s)	665, 858
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	277, 295, 382, 823, 989
Bsu15I	ATCGAT	1 cut(s)	782
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	87, 597
BsuTUI	ATCGAT	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	1083
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	2 cut(s)	378, 543
BtsIMutI	CAGTG	5 cut(s)	378, 486, 543, 988, 1023
Cac8I	GCNNGC	5 cut(s)	219, 385, 841, 991, 1050
CaiI	CAGNNNCTG	1 cut(s)	798
Cfr13I	GGNCC	2 cut(s)	85, 893
ClaI	ATCGAT	1 cut(s)	782
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	289, 731, 949
CviAII	CATG	3 cut(s)	450, 482, 769
CviQI	GTAC	3 cut(s)	289, 731, 949
DdeI	CTNAG	6 cut(s)	107, 278, 285, 542, 635, 924
DpnI	GATC	1 cut(s)	938
DpnII	GATC	1 cut(s)	936
Eam1104I	CTCTTC	3 cut(s)	61, 591, 621
EarI	CTCTTC	3 cut(s)	61, 591, 621
Eco47I	GGWCC	1 cut(s)	893
Eco81I	CCTNAGG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	881
EcoT22I	ATGCAT	1 cut(s)	691
Esp3I	CGTCTC	1 cut(s)	1056
FaeI	CATG	3 cut(s)	453, 485, 772
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	2 cut(s)	133, 683
FatI	CATG	3 cut(s)	449, 481, 768
Fnu4HI	GCNGC	5 cut(s)	266, 309, 396, 837, 1003
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	5 cut(s)	266, 309, 396, 837, 1003
FspBI	CTAG	3 cut(s)	18, 392, 599
GluI	GCNGC	5 cut(s)	266, 309, 396, 837, 1003
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	87, 597
HapII	CCGG	2 cut(s)	666, 860
HgaI	GACGC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	453, 485, 772
HinfI	GANTC	9 cut(s)	45, 125, 327, 338, 369, 426, 446, 795, 906
HpaII	CCGG	2 cut(s)	666, 860
HphI	GGTGA	3 cut(s)	334, 943, 1135
Hpy166II	GTNNAC	2 cut(s)	97, 733
Hpy188I	TCNGA	2 cut(s)	408, 819
Hpy188III	TCNNGA	3 cut(s)	18, 42, 109
Hpy8I	GTNNAC	2 cut(s)	97, 733
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	5 cut(s)	161, 221, 884, 896, 990
HpyCH4III	ACNGT	4 cut(s)	94, 361, 680, 983
HpyCH4IV	ACGT	2 cut(s)	249, 438
HpyCH4V	TGCA	9 cut(s)	265, 345, 383, 689, 703, 768, 806, 989, 1005
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 533, 798, 999, 1045
HpyF3I	CTNAG	6 cut(s)	107, 278, 285, 542, 635, 924
HpySE526I	ACGT	2 cut(s)	249, 438
Hsp92II	CATG	3 cut(s)	453, 485, 772
Kzo9I	GATC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	999
Lsp1109I	GCAGC	5 cut(s)	277, 295, 382, 823, 989
MaeI	CTAG	3 cut(s)	18, 392, 599
MaeII	ACGT	2 cut(s)	249, 438
MaeIII	GTNAC	4 cut(s)	28, 580, 680, 914
MalI	GATC	1 cut(s)	938
MboI	GATC	1 cut(s)	936
MhlI	GDGCHC	1 cut(s)	757
MluCI	AATT	7 cut(s)	170, 569, 625, 648, 695, 881, 1054
MlyI	GAGTC	2 cut(s)	134, 363
MmeI	TCCRAC	2 cut(s)	434, 1069
Mph1103I	ATGCAT	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	3 cut(s)	692, 1118, 1139
MslI	CAYNNNNRTG	2 cut(s)	260, 1026
MspI	CCGG	2 cut(s)	666, 860
MspR9I	CCNGG	2 cut(s)	667, 860
Mva1269I	GAATGC	1 cut(s)	345
MwoI	GCNNNNNNNGC	5 cut(s)	314, 533, 798, 999, 1045
NciI	CCSGG	2 cut(s)	667, 860
NdeII	GATC	1 cut(s)	936
NlaIII	CATG	3 cut(s)	453, 485, 772
NmeAIII	GCCGAG	1 cut(s)	776
NmuCI	GTSAC	1 cut(s)	914
NsiI	ATGCAT	1 cut(s)	691
PctI	GAATGC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	7 cut(s)	45, 327, 338, 426, 446, 795, 906
PkrI	GCNGC	5 cut(s)	267, 310, 397, 838, 1004
PleI	GAGTC	2 cut(s)	133, 363
PpsI	GAGTC	2 cut(s)	133, 363
PspFI	CCCAGC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	85, 893
PstNI	CAGNNNCTG	1 cut(s)	798
RsaI	GTAC	3 cut(s)	290, 732, 950
RsaNI	GTAC	3 cut(s)	289, 731, 949
RseI	CAYNNNNRTG	2 cut(s)	260, 1026
SaqAI	TTAA	3 cut(s)	692, 1118, 1139
SatI	GCNGC	5 cut(s)	266, 309, 396, 837, 1003
Sau3AI	GATC	1 cut(s)	936
Sau96I	GGNCC	2 cut(s)	85, 893
SchI	GAGTC	2 cut(s)	134, 363
ScrFI	CCNGG	2 cut(s)	667, 860
SduI	GDGCHC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	893
SmiMI	CAYNNNNRTG	2 cut(s)	260, 1026
SmlI	CTYRAG	2 cut(s)	143, 204
SmoI	CTYRAG	2 cut(s)	143, 204
Sse9I	AATT	7 cut(s)	170, 569, 625, 648, 695, 881, 1054
SsiI	CCGC	2 cut(s)	161, 993
SspMI	CTAG	3 cut(s)	18, 392, 599
StyD4I	CCNGG	2 cut(s)	665, 858
TaaI	ACNGT	4 cut(s)	94, 361, 680, 983
TaiI	ACGT	2 cut(s)	252, 441
TaqI	TCGA	3 cut(s)	128, 782, 1108
TasI	AATT	7 cut(s)	170, 569, 625, 648, 695, 881, 1054
TatI	WGTACW	3 cut(s)	288, 730, 948
TfiI	GAWTC	7 cut(s)	45, 327, 338, 426, 446, 795, 906
Tru1I	TTAA	3 cut(s)	692, 1118, 1139
Tru9I	TTAA	3 cut(s)	692, 1118, 1139
TscAI	CASTG	5 cut(s)	385, 493, 543, 988, 1030
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	5 cut(s)	265, 308, 395, 836, 1002
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	4 cut(s)	37, 318, 459, 977
TspRI	CASTG	5 cut(s)	385, 493, 543, 988, 1030
VpaK11BI	GGWCC	1 cut(s)	893
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	4 cut(s)	625, 695, 881, 1054
XbaI	TCTAGA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	3 cut(s)	18, 392, 599
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.