Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

18438430 .. 18442400

Gene Structure 3971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1077800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAGTTTGAGACAGCAATTCAAGGGTGCAATTATATTTTTCACTTGGCCACCCCTTGCAGCACGAGGCCAAGGATACTCAGTTTCGGGAATTAAGAGCATAGTGAGGTCTTGTATCAAATCAGGCACCATAAAGCGCCTCATTTACACAGCCTCTGTGGTGGCCGCATCACCAATCAAAGACTCTGGAAATGGCTTCAAACAGTTTATGGATGAGTCCTGTTGGACTCCCCTCAATCTTTCATTAGCCTTTGCCAATAAAGTATTGATTGACTATACACACTCAAAGAGCCTTTCAGAGAAAGAAGTGTTGAAGCACACTAGTGGTGACCTTGAAGTGGTCAGCATTGCTTGTGGCCTAGTGGGAGGGGACACACTTCTCACTACTATGCCTGAGAGCATGGGAGTGCTCATTTCACAAATCACAAAAGATAGTAGGAGATACCAAACCCTGAGATTTTTGGAGGAATTGCTTGGTAAAGTTCCAATCGTGCACATTGAAGATGTTTGTGAGGCACACATATTATGCATGGAGAAGCCTTCCATCAATGGCAGATTTCTATGTGTTAGTGCATATTTGTCTTCAGCAGAGATAGCATCTCACTGGGAAAAAAATTACCCAAGTCTCAAAATAGCTGAAGAGTTTGTGGAAGATTCAGGGAGAGACATTGGCTGGGGTTCCACAAAGCTTAAGAAAATTGGATTTGAGTACAAATTTGATGCCAAGGTGATATTAGATGACACTCTAAAGTGGGCCCAAAAGATGGAAATGCACCACAATTCAAGAATTTGGAGTTTTTCTGAGATTCCTCACAATGCCGGTTCGATGACGTTACTTCCAAGATTTATATATTGCTGTATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

289

Amino Acids

32.24

Weight (kDa)

8.53

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	763
AciI	CCGC	1 cut(s)	165
AcoI	YGGCCR	2 cut(s)	47, 162
AcsI	RAATTY	2 cut(s)	713, 786
AcuI	CTGAAG	2 cut(s)	567, 657
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	337, 763
AflII	CTTAAG	1 cut(s)	689
AgsI	TTSAA	6 cut(s)	22, 199, 313, 335, 500, 783
AhlI	ACTAGT	1 cut(s)	320
AleI	CACNNNNGTG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	635, 688
AluI	AGCT	2 cut(s)	635, 688
Alw21I	GWGCWC	2 cut(s)	411, 495
Alw26I	GTCTC	3 cut(s)	4, 629, 657
Alw44I	GTGCAC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	5 cut(s)	47, 67, 162, 355, 753
ApaI	GGGCCC	1 cut(s)	757
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	713, 786
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	753, 754
AsuHPI	GGTGA	3 cut(s)	162, 338, 739
BaeGI	GKGCMC	2 cut(s)	495, 757
BalI	TGGCCA	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	2 cut(s)	411, 495
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	551, 757
BciVI	GTATCC	1 cut(s)	68
BcoDI	GTCTC	3 cut(s)	4, 629, 657
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	321, 359
BfoI	RGCGCY	1 cut(s)	139
BfrI	CTTAAG	1 cut(s)	689
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	60, 165
BlsI	GCNGC	2 cut(s)	61, 166
BmgT120I	GGNCC	2 cut(s)	753, 754
BmiI	GGNNCC	3 cut(s)	127, 679, 755
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	176, 605, 709
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	70, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 763
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	70, 723
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	337, 763
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	4 cut(s)	93, 384, 443, 792
BseNI	ACTGG	1 cut(s)	608
BseSI	GKGCMC	2 cut(s)	495, 757
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	672
BshFI	GGCC	5 cut(s)	49, 69, 164, 357, 755
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	411, 495
BsiSI	CCGG	1 cut(s)	819
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	337, 763
BsmAI	GTCTC	3 cut(s)	4, 629, 657
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	5 cut(s)	49, 69, 164, 357, 755
Bsp120I	GGGCCC	1 cut(s)	753
Bsp1286I	GDGCHC	3 cut(s)	411, 495, 757
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	5 cut(s)	49, 69, 164, 357, 755
BspCNI	CTCAG	4 cut(s)	92, 385, 444, 793
BspLI	GGNNCC	3 cut(s)	127, 679, 755
BspT107I	GGYRCC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	2 cut(s)	70, 723
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	70, 723
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	633
BstAFI	CTTAAG	1 cut(s)	689
BstDEI	CTNAG	4 cut(s)	79, 393, 452, 801
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstMAI	GTCTC	3 cut(s)	4, 629, 657
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstPI	GGTNACC	1 cut(s)	326
BstSLI	GKGCMC	2 cut(s)	495, 757
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	5 cut(s)	49, 69, 164, 357, 755
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	601
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	2 cut(s)	753, 754
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	2 cut(s)	400, 529
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	4 cut(s)	79, 393, 452, 801
EaeI	YGGCCR	2 cut(s)	47, 162
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	70, 723
Eco24I	GRGCYC	1 cut(s)	757
Eco57I	CTGAAG	2 cut(s)	567, 657
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	70, 723
EcoT22I	ATGCAT	1 cut(s)	530
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	2 cut(s)	70, 723
FaeI	CATG	2 cut(s)	403, 532
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	399, 528
Fnu4HI	GCNGC	2 cut(s)	60, 165
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	2 cut(s)	60, 165
FspBI	CTAG	2 cut(s)	321, 359
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	60, 165
GsaI	CCCAGC	1 cut(s)	676
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	5 cut(s)	49, 69, 164, 357, 755
HapII	CCGG	1 cut(s)	819
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	403, 532
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	182, 215, 226, 653, 805
HpaII	CCGG	1 cut(s)	819
HphI	GGTGA	3 cut(s)	162, 338, 739
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	298, 802
Hpy188III	TCNNGA	3 cut(s)	87, 186, 783
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	6 cut(s)	29, 59, 493, 528, 572, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	4 cut(s)	79, 393, 452, 801
HpySE526I	ACGT	1 cut(s)	830
Hsp92II	CATG	2 cut(s)	403, 532
HspAI	GCGC	1 cut(s)	136
LpnPI	CCDG	9 cut(s)	108, 171, 232, 405, 464, 589, 642, 658, 832
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	3 cut(s)	176, 605, 709
MaeI	CTAG	2 cut(s)	321, 359
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	2 cut(s)	326, 831
MboII	GAAGA	4 cut(s)	512, 573, 650, 662
MhlI	GDGCHC	3 cut(s)	411, 495, 757
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	9 cut(s)	17, 30, 90, 467, 613, 696, 713, 778, 786
MluNI	TGGCCA	1 cut(s)	49
MlyI	GAGTC	3 cut(s)	176, 220, 224
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	9 cut(s)	59, 99, 149, 163, 242, 359, 457, 505, 819
Mox20I	TGGCCA	1 cut(s)	49
Mph1103I	ATGCAT	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	2 cut(s)	93, 690
MslI	CAYNNNNRTG	3 cut(s)	321, 386, 404
Msp20I	TGGCCA	1 cut(s)	49
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	1 cut(s)	819
MwoI	GCNNNNNNNGC	1 cut(s)	593
NlaIII	CATG	2 cut(s)	403, 532
NlaIV	GGNNCC	3 cut(s)	127, 679, 755
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	530
OliI	CACNNNNGTG	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	653, 805
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	61, 166
PleI	GAGTC	3 cut(s)	176, 220, 223
PpsI	GAGTC	3 cut(s)	176, 220, 223
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	127, 679, 755
PspOMI	GGGCCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	753, 754
PstNI	CAGNNNCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	3 cut(s)	321, 386, 404
SaqAI	TTAA	2 cut(s)	93, 690
SatI	GCNGC	2 cut(s)	60, 165
Sau96I	GGNCC	2 cut(s)	753, 754
SchI	GAGTC	3 cut(s)	176, 220, 224
SduI	GDGCHC	3 cut(s)	411, 495, 757
SetI	ASST	6 cut(s)	110, 333, 637, 690, 729, 833
SfaNI	GCATC	3 cut(s)	176, 605, 709
SmiMI	CAYNNNNRTG	3 cut(s)	321, 386, 404
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	9 cut(s)	17, 30, 90, 467, 613, 696, 713, 778, 786
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	321, 359
StyI	CCWWGG	2 cut(s)	70, 723
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	1 cut(s)	824
TasI	AATT	9 cut(s)	17, 30, 90, 467, 613, 696, 713, 778, 786
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	653, 805
Tru1I	TTAA	2 cut(s)	93, 690
Tru9I	TTAA	2 cut(s)	93, 690
TscAI	CASTG	1 cut(s)	608
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	608
Van91I	CCANNNNNTGG	1 cut(s)	763
Vha464I	CTTAAG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	713, 786
XspI	CTAG	2 cut(s)	321, 359
Zsp2I	ATGCAT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.