Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

22628577 .. 22631012

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGTAGTTTTGGCTGCAAGGTATGTGTTACAGGAGGTGCAGGCTACATTGGTTCTTGGCTTGTCAAGAAGCTTTTACAGAAAGGCTACACTGTCCATGCAACACTCAGAAACTTGGATGATGTGTCCAAAGTGAGCCTTCTGAAGAGCCTTCCTGATGCAGATGCAAGGCTTGTGCTGTTTGAAGCTGACATTTACAACCCAACTGAGTTTGAGCCTGCAATTGAAGGCTGTGAGTTTGTTTTCCATGTAGCAACTCCCTTACAACACACTGAAAACTCCCAGTACAAGAACACAACTGAAGCTGCTATAGCTGGGGCAAAGAGCATTGCAGAGTCTTGTCTGAAATCAGGAACAGTTAAGAGGCTAATCTACACAGCTTCTGTGGTTGCTGCATCTCCACTGAAAGAGGATGGGAGTGGTTTGGGGGACTTCATGGATGAAACATGCTGGACCCCTCTCCATCTTTCATTTGCTTGTTCTAATGTTCATCTCAAGGCCTATGTAGATTCAAAGACATTGGCAGAGAAAGAAATTCTGAGCTATGGGAACAGCAAAAATGCCGGACTTGAAGTTGTGACCCTGGCCTGTGGCCTTGTGGGAGGGGATGCACTTCTGTCATTCACACCCTTGAGTGTTGCTGTGTTTATTTGTCAGCTTACAAGCAGTGCAATTGAGTACCAATCACTGAGATTTCTAGAGGAATTACTTGGGAAAATTCCAATCATACACATCGATGATGTTTGCGATGCTCATATCTTCTGCATCGAGAATCCTTCGATAAATGGTAGATTTTTATGTGCAAGCTCGTCTGTTTCATCTGCAGAAATTGCTAGTTACTACCAGCAACATTACCCCAAACTTCAAGTGAAGCCAGAGTATTTGGATGGACCAACAAGAGAAATTGGCTTGGGTTCTACAAAGCTTATTGAGAAGGGTTTTGTATACAAATATGATACCAAGACGATATTAGAAGATTGCATCAAATGTGCAAAGACAAGGGGTGTCCCTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

340

Amino Acids

36.75

Weight (kDa)

5.66

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	945
AcsI	RAATTY	2 cut(s)	534, 717
AcuI	CTGAAG	2 cut(s)	164, 321
AfaI	GTAC	2 cut(s)	287, 680
AgsI	TTSAA	5 cut(s)	185, 227, 513, 572, 866
AjnI	CCWGG	2 cut(s)	582, 1009
AluBI	AGCT	9 cut(s)	73, 188, 305, 314, 380, 543, 658, 807, 925
AluI	AGCT	9 cut(s)	73, 188, 305, 314, 380, 543, 658, 807, 925
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	4 cut(s)	498, 585, 592, 1012
ApeKI	GCWGC	3 cut(s)	15, 305, 392
ApoI	RAATTY	2 cut(s)	534, 717
AspS9I	GGNCC	2 cut(s)	453, 890
AvaII	GGWCC	2 cut(s)	453, 890
BbvI	GCAGC	3 cut(s)	2, 292, 379
BccI	CCATC	3 cut(s)	407, 471, 881
BciT130I	CCWGG	2 cut(s)	584, 1011
BfaI	CTAG	2 cut(s)	698, 834
BfmI	CTRYAG	2 cut(s)	309, 822
BisI	GCNGC	3 cut(s)	16, 306, 393
BlsI	GCNGC	3 cut(s)	17, 307, 394
Bme1390I	CCNGG	2 cut(s)	584, 1011
Bme18I	GGWCC	2 cut(s)	453, 890
BmgT120I	GGNCC	2 cut(s)	453, 890
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	2 cut(s)	584, 1011
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	7 cut(s)	148, 154, 404, 598, 739, 774, 990
BmuI	ACTGGG	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	479, 652
Bsa29I	ATCGAT	1 cut(s)	735
BsaJI	CCNNGG	2 cut(s)	582, 1009
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	584, 1011
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	582, 1009
BseGI	GGATG	5 cut(s)	124, 418, 445, 613, 892
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	4 cut(s)	121, 198, 530, 680
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	2, 292, 379
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	500, 587, 594, 1014
BshVI	ATCGAT	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	443, 992
BsmFI	GGGAC	2 cut(s)	443, 992
BsnI	GGCC	4 cut(s)	500, 587, 594, 1014
BspANI	GGCC	4 cut(s)	500, 587, 594, 1014
BspCNI	CTCAG	4 cut(s)	120, 199, 531, 681
BspDI	ATCGAT	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	826
BspQI	GCTCTTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	582, 1009
BssNAI	GTATAC	1 cut(s)	946
Bst1107I	GTATAC	1 cut(s)	946
Bst2UI	CCWGG	2 cut(s)	584, 1011
Bst4CI	ACNGT	2 cut(s)	94, 358
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstC8I	GCNNGC	3 cut(s)	43, 219, 805
BstDEI	CTNAG	4 cut(s)	107, 207, 539, 689
BstF5I	GGATG	5 cut(s)	124, 418, 445, 613, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 830
BstNI	CCWGG	2 cut(s)	584, 1011
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	582, 1009
BstSFI	CTRYAG	2 cut(s)	309, 822
BstV1I	GCAGC	3 cut(s)	2, 292, 379
BstZ17I	GTATAC	1 cut(s)	946
Bsu15I	ATCGAT	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	500, 587, 594, 1014
BsuTUI	ATCGAT	1 cut(s)	735
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	5 cut(s)	124, 418, 445, 613, 892
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	5 cut(s)	90, 270, 401, 673, 686
Cac8I	GCNNGC	3 cut(s)	43, 219, 805
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	453, 890
ClaI	ATCGAT	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	286, 679
CviAII	CATG	4 cut(s)	98, 248, 436, 447
CviQI	GTAC	2 cut(s)	286, 679
DdeI	CTNAG	4 cut(s)	107, 207, 539, 689
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	453, 890
Eco57I	CTGAAG	2 cut(s)	164, 321
EcoRII	CCWGG	2 cut(s)	582, 1009
FaeI	CATG	4 cut(s)	101, 251, 439, 450
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	2 cut(s)	443, 992
FatI	CATG	4 cut(s)	97, 247, 435, 446
FblI	GTMKAC	1 cut(s)	945
Fnu4HI	GCNGC	3 cut(s)	16, 306, 393
FokI	GGATG	5 cut(s)	131, 425, 452, 620, 899
Fsp4HI	GCNGC	3 cut(s)	16, 306, 393
FspBI	CTAG	2 cut(s)	698, 834
GluI	GCNGC	3 cut(s)	16, 306, 393
GsaI	CCCAGC	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	500, 587, 594, 1014
HapII	CCGG	1 cut(s)	564
Hin1II	CATG	4 cut(s)	101, 251, 439, 450
HindIII	AAGCTT	2 cut(s)	71, 923
HinfI	GANTC	3 cut(s)	335, 509, 772
HpaII	CCGG	1 cut(s)	564
Hpy166II	GTNNAC	1 cut(s)	946
Hpy188I	TCNGA	4 cut(s)	110, 144, 345, 540
Hpy188III	TCNNGA	5 cut(s)	67, 155, 351, 698, 769
Hpy8I	GTNNAC	1 cut(s)	946
HpyAV	CCTTC	5 cut(s)	149, 161, 221, 786, 928
HpyCH4III	ACNGT	2 cut(s)	94, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 830
HpyF3I	CTNAG	4 cut(s)	107, 207, 539, 689
Hsp92II	CATG	4 cut(s)	101, 251, 439, 450
LguI	GCTCTTC	1 cut(s)	140
Lsp1109I	GCAGC	3 cut(s)	2, 292, 379
LweI	GCATC	7 cut(s)	148, 154, 404, 598, 739, 774, 990
MaeI	CTAG	2 cut(s)	698, 834
MaeIII	GTNAC	3 cut(s)	28, 577, 836
MboII	GAAGA	3 cut(s)	157, 751, 986
MfeI	CAATTG	2 cut(s)	222, 672
MluCI	AATT	7 cut(s)	222, 534, 672, 704, 717, 828, 903
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	6 cut(s)	29, 357, 403, 468, 596, 694
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	735
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	584, 1011
MunI	CAATTG	2 cut(s)	222, 672
MvaI	CCWGG	2 cut(s)	584, 1011
MwoI	GCNNNNNNNGC	2 cut(s)	311, 830
NlaIII	CATG	4 cut(s)	101, 251, 439, 450
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	509, 772
PkrI	GCNGC	3 cut(s)	17, 307, 394
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	582, 1009
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	582, 1009
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	2 cut(s)	453, 890
PstI	CTGCAG	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	287, 680
RsaNI	GTAC	2 cut(s)	286, 679
RseI	CAYNNNNRTG	1 cut(s)	735
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	16, 306, 393
Sau96I	GGNCC	2 cut(s)	453, 890
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	584, 1011
SfaNI	GCATC	7 cut(s)	148, 154, 404, 598, 739, 774, 990
SfcI	CTRYAG	2 cut(s)	309, 822
SinI	GGWCC	2 cut(s)	453, 890
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	2 cut(s)	494, 631
SmoI	CTYRAG	2 cut(s)	494, 631
Sse9I	AATT	7 cut(s)	222, 534, 672, 704, 717, 828, 903
SseBI	AGGCCT	1 cut(s)	500
SspMI	CTAG	2 cut(s)	698, 834
StuI	AGGCCT	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	582, 1009
TaaI	ACNGT	2 cut(s)	94, 358
TaqI	TCGA	3 cut(s)	735, 768, 779
TasI	AATT	7 cut(s)	222, 534, 672, 704, 717, 828, 903
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	509, 772
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	5 cut(s)	97, 277, 408, 673, 693
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	3 cut(s)	15, 305, 392
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	5 cut(s)	424, 456, 459, 479, 807
TspRI	CASTG	5 cut(s)	97, 277, 408, 673, 693
VpaK11BI	GGWCC	2 cut(s)	453, 890
XapI	RAATTY	2 cut(s)	534, 717
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	945
XspI	CTAG	2 cut(s)	698, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.