Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

22634253 .. 22636034

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G185000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGAACACCAAGGTTTGTGTTACAGGAGGCTCAAGCTACCTTGGCTCTTCTCTTGTCAAAAGGCTCTTAGAGAAAGGATACAGTGTCCATGCAACACTGAGAAATCTGGGTGATCCATTTAAAGGGGGGCTTCTCAAGGGTCTTCCAAATGCACAGGAGAGATTAAGATTGTTTGAAGCAGATATATATAATCCTTATGAGTTTGAGCCAGCAATCCAAGGCTGCAAATATATCTTCCACTTGGCTACCCCTTTGCAGCATGAGCCCAAGGACACTCAGTTCAAAAACACTTCTGAGGCTGCAGTTGCTGGGCTTAACAGCATAGTAAGGTCTTGCATCAAATCAGGCACCGTAAAACGACTCATTTACACAGCCTCTGTGGAAGCTGCAGCACCAATCAAAGACTCTGGAAACGGCTTCCAAAAATATATGGACGAGTCCTGCTGGACTCCTCTCAATCTCTTATATCCTCTTGCCAATCAAACATTGATGTTGCGTTATATTGCCAGCCGTATATGTATGTGGGCCATGGGGTTGCTCATTTCGCAAATCGCAAGTGATGAAAGGAGTTACCAAATGCTTAGATTTTTGGAGGACTTGTTGGGTAAAGTTCCAATTGTGCACATTGAAGATGTTTGTGAGGCACACATACTATGCATAGGGAAGCCCTGCATCAGTGGCAGATTTCTATGTACCAGTGCATATTTGTCATCTGCAAAAATAGCATCTCACTGGAAAAAATATCACCCAGATATCAGAATAGCTGAAGAGTTTGTGGAAGATTTAGGGAGAGAAATTGTTTGGGGTTCCACAAAGCTAGAGAAAATCGGATTCGAGTACAAATTTGATGCCAAGGTGATATTGGATGAGACTCTAAAGTGGGCACAGAAGATGGGCGAGTTTGGTTCCAGCCAAGAAATTATTGTGTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

313

Amino Acids

35.01

Weight (kDa)

7.99

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	845
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	2 cut(s)	697, 842
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	179, 286, 632
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	39, 389, 767, 820
AluI	AGCT	4 cut(s)	39, 389, 767, 820
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	866
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	2 cut(s)	311, 380
AoxI	GGCC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	5 cut(s)	225, 259, 302, 389, 392
ApoI	RAATTY	1 cut(s)	845
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	3 cut(s)	125, 740, 871
BaeGI	GKGCMC	2 cut(s)	627, 889
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	5 cut(s)	212, 271, 289, 376, 404
BccI	CCATC	1 cut(s)	889
BceAI	ACGGC	2 cut(s)	433, 498
BciVI	GTATCC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	866
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	2 cut(s)	303, 390
BfuI	GTATCC	1 cut(s)	74
BisI	GCNGC	5 cut(s)	226, 260, 303, 390, 393
BlsI	GCNGC	5 cut(s)	227, 261, 304, 391, 394
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	3 cut(s)	352, 811, 910
BmsI	GCATC	4 cut(s)	348, 684, 737, 841
BpiI	GAAGAC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	19, 122
BsaJI	CCNNGG	6 cut(s)	12, 43, 220, 270, 531, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	699, 740
BseDI	CCNNGG	6 cut(s)	12, 43, 220, 270, 531, 855
BseGI	GGATG	1 cut(s)	874
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	92, 288, 293
BseNI	ACTGG	2 cut(s)	699, 740
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	2 cut(s)	627, 889
BseXI	GCAGC	5 cut(s)	212, 271, 289, 376, 404
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	866
BsnI	GGCC	1 cut(s)	530
Bsp1286I	GDGCHC	3 cut(s)	270, 627, 889
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	3 cut(s)	93, 289, 292
BspLI	GGNNCC	3 cut(s)	352, 811, 910
BspMAI	CTGCAG	2 cut(s)	307, 394
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	699, 740
BssECI	CCNNGG	6 cut(s)	12, 43, 220, 270, 531, 855
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	6 cut(s)	12, 43, 220, 270, 531, 855
Bst4CI	ACNGT	2 cut(s)	86, 355
Bst6I	CTCTTC	2 cut(s)	55, 765
BstC8I	GCNNGC	2 cut(s)	213, 511
BstDEI	CTNAG	5 cut(s)	70, 101, 279, 297, 584
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	874
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	866
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 265, 308, 547, 681, 725
BstSFI	CTRYAG	2 cut(s)	303, 390
BstSLI	GKGCMC	2 cut(s)	627, 889
BstV1I	GCAGC	5 cut(s)	212, 271, 289, 376, 404
BstV2I	GAAGAC	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	874
BtsIMutI	CAGTG	5 cut(s)	91, 98, 685, 706, 733
Cac8I	GCNNGC	2 cut(s)	213, 511
CaiI	CAGNNNCTG	2 cut(s)	311, 380
Cfr13I	GGNCC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	696, 841
CviAII	CATG	3 cut(s)	92, 263, 532
CviQI	GTAC	2 cut(s)	696, 841
DdeI	CTNAG	5 cut(s)	70, 101, 279, 297, 584
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	55, 765
EarI	CTCTTC	2 cut(s)	55, 765
Eco130I	CCWWGG	6 cut(s)	12, 43, 220, 270, 531, 855
Eco24I	GRGCYC	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	789
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	6 cut(s)	12, 43, 220, 270, 531, 855
EcoT22I	ATGCAT	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	6 cut(s)	12, 43, 220, 270, 531, 855
FaeI	CATG	3 cut(s)	95, 266, 535
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	91, 262, 531
Fnu4HI	GCNGC	5 cut(s)	226, 260, 303, 390, 393
FokI	GGATG	1 cut(s)	881
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	5 cut(s)	226, 260, 303, 390, 393
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	5 cut(s)	226, 260, 303, 390, 393
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	530
Hin1II	CATG	3 cut(s)	95, 266, 535
HinfI	GANTC	6 cut(s)	363, 407, 440, 451, 834, 874
HphI	GGTGA	3 cut(s)	125, 740, 871
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	3 cut(s)	298, 761, 833
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	1 cut(s)	625
HpyCH4III	ACNGT	2 cut(s)	86, 355
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 265, 308, 547, 681, 725
HpyF3I	CTNAG	5 cut(s)	70, 101, 279, 297, 584
Hsp92II	CATG	3 cut(s)	95, 266, 535
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	55
Lsp1109I	GCAGC	5 cut(s)	212, 271, 289, 376, 404
LweI	GCATC	4 cut(s)	348, 684, 737, 841
MaeI	CTAG	1 cut(s)	821
MaeIII	GTNAC	2 cut(s)	22, 572
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	7 cut(s)	42, 137, 229, 644, 782, 794, 904
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	3 cut(s)	270, 627, 889
MluCI	AATT	4 cut(s)	618, 798, 845, 921
MlyI	GAGTC	5 cut(s)	357, 401, 445, 449, 868
MnlI	CCTC	7 cut(s)	23, 292, 388, 465, 483, 589, 637
Mph1103I	ATGCAT	1 cut(s)	662
MseI	TTAA	3 cut(s)	123, 167, 318
MunI	CAATTG	1 cut(s)	618
MwoI	GCNNNNNNNGC	6 cut(s)	45, 265, 308, 547, 681, 725
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	95, 266, 535
NlaIV	GGNNCC	3 cut(s)	352, 811, 910
NsiI	ATGCAT	1 cut(s)	662
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	834
PkrI	GCNGC	5 cut(s)	227, 261, 304, 391, 394
PleI	GAGTC	5 cut(s)	357, 401, 445, 448, 868
PpsI	GAGTC	5 cut(s)	357, 401, 445, 448, 868
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	352, 811, 910
PspPI	GGNCC	1 cut(s)	528
PstI	CTGCAG	2 cut(s)	307, 394
PstNI	CAGNNNCTG	2 cut(s)	311, 380
RsaI	GTAC	2 cut(s)	697, 842
RsaNI	GTAC	2 cut(s)	696, 841
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	123, 167, 318
SatI	GCNGC	5 cut(s)	226, 260, 303, 390, 393
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	528
SchI	GAGTC	5 cut(s)	357, 401, 445, 449, 868
SduI	GDGCHC	3 cut(s)	270, 627, 889
SetI	ASST	8 cut(s)	18, 41, 45, 335, 391, 769, 822, 861
SfaNI	GCATC	4 cut(s)	348, 684, 737, 841
SfcI	CTRYAG	2 cut(s)	303, 390
SmlI	CTYRAG	2 cut(s)	34, 137
SmoI	CTYRAG	2 cut(s)	34, 137
Sse9I	AATT	4 cut(s)	618, 798, 845, 921
SspMI	CTAG	1 cut(s)	821
StyI	CCWWGG	6 cut(s)	12, 43, 220, 270, 531, 855
TaaI	ACNGT	2 cut(s)	86, 355
TaqI	TCGA	1 cut(s)	837
TasI	AATT	4 cut(s)	618, 798, 845, 921
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	1 cut(s)	834
Tru1I	TTAA	3 cut(s)	123, 167, 318
Tru9I	TTAA	3 cut(s)	123, 167, 318
TscAI	CASTG	5 cut(s)	91, 105, 685, 706, 740
TseI	GCWGC	5 cut(s)	225, 259, 302, 389, 392
TspDTI	ATGAA	1 cut(s)	579
TspRI	CASTG	5 cut(s)	91, 105, 685, 706, 740
VneI	GTGCAC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XspI	CTAG	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.