Rorug07G0022100

Anthocyanidin reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001687
Physical Location & Seq
Reverse (-)
1630078 .. 1630611
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0022100.1

Sequence Viewer

Length: 249 bp
ATGAGTCTCTCTTCCTTATTCCATTTTGTTGTGGTGGTTTTACTAGTTGCTGCCATTTTCACAGTTCAGCTAGGCTTGGTCACAGCAGATACCAATATGATTAGGGAGCTGAGAGAAAGGAGACCACCGCCTCTACGGTCGTCATCGCCGGTTGCAAATCAACACCCGGGAATGAGACAACCGGCTCCGCCAGCTCCGGCGGTAGAATCACCACCTGGGCCTCCTCCTCCTAAACCAGTTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

82

Amino Acids

8.78

Weight (kDa)

11.34

Isoelectric Point (pI)

82.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 128, 188, 200
AgsI TTSAA 1 cut(s) 243
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 70, 109, 194
AluI AGCT 3 cut(s) 70, 109, 194
Alw26I GTCTC 3 cut(s) 11, 115, 169
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 2 cut(s) 167, 168
AsuHPI GGTGA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 166
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 2 cut(s) 167, 168
BcoDI GTCTC 3 cut(s) 11, 115, 169
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 2 cut(s) 44, 71
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 3 cut(s) 167, 168, 216
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 167, 168, 216
BpuMI CCSGG 2 cut(s) 167, 168
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 166, 215
Bse118I RCCGGY 2 cut(s) 148, 181
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 166, 215
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 213, 216
BseXI GCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 4 cut(s) 149, 167, 182, 197
BsmAI GTCTC 3 cut(s) 11, 115, 169
BsnI GGCC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 166
BspACI CCGC 3 cut(s) 128, 188, 200
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 2 cut(s) 148, 181
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 2 cut(s) 148, 181
BssECI CCNNGG 2 cut(s) 166, 215
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 64, 138
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 110
BstMAI GTCTC 3 cut(s) 11, 115, 169
BstMCI CGRYCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 3 cut(s) 165, 166, 214
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 192
Cfr10I RCCGGY 2 cut(s) 148, 181
Cfr13I GGNCC 1 cut(s) 218
Cfr9I CCCGGG 1 cut(s) 166
CviJI RGCY 6 cut(s) 70, 75, 109, 185, 194, 220
CviKI_1 RGCY 6 cut(s) 70, 75, 109, 185, 194, 220
DdeI CTNAG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 214
FaiI YATR 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 44, 71
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 220
HapII CCGG 4 cut(s) 149, 167, 182, 197
HinfI GANTC 2 cut(s) 4, 206
HpaII CCGG 4 cut(s) 149, 167, 182, 197
HphI GGTGA 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 64, 138
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 110
LmnI GCTCC 3 cut(s) 106, 190, 199
LpnPI CCDG 7 cut(s) 162, 180, 195, 201, 204, 210, 228
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 2 cut(s) 44, 71
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 1 cut(s) 3
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 141, 231, 234, 237
MspI CCGG 4 cut(s) 149, 167, 182, 197
MspR9I CCNGG 3 cut(s) 167, 168, 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 2 cut(s) 167, 168
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 218
SatI GCNGC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 167, 168, 216
SetI ASST 4 cut(s) 72, 111, 196, 217
SmaI CCCGGG 1 cut(s) 168
SpeI ACTAGT 1 cut(s) 43
SsiI CCGC 3 cut(s) 128, 188, 200
SspMI CTAG 2 cut(s) 44, 71
StyD4I CCNGG 3 cut(s) 165, 166, 214
TaaI ACNGT 2 cut(s) 64, 138
TfiI GAWTC 1 cut(s) 206
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 79
TspMI CCCGGG 1 cut(s) 166
XmaI CCCGGG 1 cut(s) 166
XspI CTAG 2 cut(s) 44, 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.