Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00929

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Reverse (-)

8146 .. 9457

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGAAGAGTAATGGCTGCAAGGTTTGTATTACAGGAGGTGCAGGGTACATAGGCTCTTGGCTTGTCAAGAAGCTTTTAGAGAAGGGATACACTGTCCATGCAACACTCAGAAACTTGGATGATGTTTCGAAGGTGAGCCTTCTGAAGTGCCTTCCTGATTCTGATGAAAGGCTAGTGCTTTTTGAAGCTGACTTCTATAATCCAGTTACGTTTGAGCAGGCAATTGAAGGATGTGAATTTGTTTTCCATGTAGCAACTCCCTTGCTTCACACCCCAAACTCCCAGGACTATGAAGATTCAAAGACACTGGCAGAGAAAGAAATCTTGAGCTATGTGTATCGCAACAAAAGAAGTGGACTTGAGATTGTGAGCTTGGCCTGTGGTCTTGTGGGAGGGGACTCACTTCCATCATTCACGCCTGTAACTGTAGCTTGTTTAGTTTCTCAGCTTACAAATAGTGCAAATGAGTACAATTGTCTGAGATTCTCAGAGGAATTGCTAGGGAAAATTCCAATAGTCCATATTGATGATGTTTGTGATGCTCATATCTTCTGCATGGAGAGTCCTTCAATAAATGGTAGGTTTCTGTGCACAAGATCCTATGTTTCATCTGCACAAATTGCTAGTTACTATCAGCAACATTATCCAGAACTTGAAGTGAAGCAAGAGTGTTTGGATTTACCAAAGAGGCAAATTGGCTGGGGTTCTACCAAGCTTAGTGAGGAGGGATTTGTGTACAAATCTGATACGAAGATGATATTGGATGATTGCATAACGGCTGCAAGAAGATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

266

Amino Acids

29.65

Weight (kDa)

5.31

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	8 - 103	6.1e-07	NmrA-like family
Epimerase	PF01370	9 - 97	2.6e-09	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	11 - 86	9.2e-10	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	13 - 86	3.2e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	594
AcsI	RAATTY	2 cut(s)	239, 510
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	3 cut(s)	50, 473, 740
AgsI	TTSAA	5 cut(s)	188, 230, 303, 573, 659
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	7 cut(s)	76, 191, 333, 375, 434, 451, 718
AluI	AGCT	7 cut(s)	76, 191, 333, 375, 434, 451, 718
Alw21I	GWGCWC	1 cut(s)	596
Alw44I	GTGCAC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	594
AoxI	GGCC	1 cut(s)	378
ApaLI	GTGCAC	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	18, 782
ApoI	RAATTY	2 cut(s)	239, 510
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	2 cut(s)	5, 769
BccI	CCATC	2 cut(s)	418, 786
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	83
BfaI	CTAG	3 cut(s)	176, 503, 627
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	19, 783
BlsI	GCNGC	2 cut(s)	20, 784
Bme1390I	CCNGG	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	532
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	349, 383
BsaJI	CCNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	206, 315
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	127, 239, 772
BseMII	CTCAG	4 cut(s)	124, 461, 473, 504
BseNI	ACTGG	2 cut(s)	206, 315
BseRI	GAGGAG	1 cut(s)	740
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	2 cut(s)	5, 769
BseYI	CCCAGC	1 cut(s)	702
BsgI	GTGCAG	2 cut(s)	63, 600
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	596
BslFI	GGGAC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	1 cut(s)	599
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	4 cut(s)	123, 460, 474, 503
BspPI	GGATC	1 cut(s)	594
BspT104I	TTCGAA	1 cut(s)	131
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	2 cut(s)	206, 315
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	97, 430
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstAUI	TGTACA	1 cut(s)	738
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	5 cut(s)	110, 447, 482, 490, 719
BstF5I	GGATG	3 cut(s)	127, 239, 772
BstKTI	GATC	1 cut(s)	602
BstMBI	GATC	1 cut(s)	599
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	5, 769
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	3 cut(s)	127, 239, 772
BtsIMutI	CAGTG	2 cut(s)	93, 308
Cac8I	GCNNGC	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	49, 472, 739
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	3 cut(s)	101, 251, 559
CviQI	GTAC	3 cut(s)	49, 472, 739
DdeI	CTNAG	5 cut(s)	110, 447, 482, 490, 719
DpnI	GATC	1 cut(s)	601
DpnII	GATC	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	104, 254, 562
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	100, 250, 558
Fnu4HI	GCNGC	2 cut(s)	19, 783
FokI	GGATG	3 cut(s)	134, 246, 779
Fsp4HI	GCNGC	2 cut(s)	19, 783
FspBI	CTAG	3 cut(s)	176, 503, 627
GluI	GCNGC	2 cut(s)	19, 783
GsaI	CCCAGC	1 cut(s)	706
HaeIII	GGCC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	104, 254, 562
HindIII	AAGCTT	2 cut(s)	74, 716
HinfI	GANTC	5 cut(s)	161, 299, 401, 486, 565
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	359, 594, 739
Hpy188I	TCNGA	6 cut(s)	113, 147, 166, 483, 493, 748
Hpy188III	TCNNGA	4 cut(s)	70, 158, 328, 650
Hpy8I	GTNNAC	3 cut(s)	359, 594, 739
HpyAV	CCTTC	6 cut(s)	79, 127, 152, 164, 224, 579
HpyCH4III	ACNGT	2 cut(s)	97, 430
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	9 cut(s)	21, 44, 104, 464, 558, 594, 617, 774, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	5 cut(s)	110, 447, 482, 490, 719
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	104, 254, 562
Kzo9I	GATC	1 cut(s)	599
Lsp1109I	GCAGC	2 cut(s)	5, 769
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	3 cut(s)	176, 503, 627
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	208, 424, 629
MalI	GATC	1 cut(s)	601
MboI	GATC	1 cut(s)	599
MboII	GAAGA	5 cut(s)	19, 308, 544, 766, 801
MfeI	CAATTG	2 cut(s)	225, 475
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	7 cut(s)	225, 239, 475, 497, 510, 621, 696
MlyI	GAGTC	2 cut(s)	395, 574
MnlI	CCTC	6 cut(s)	32, 389, 487, 684, 718, 721
MslI	CAYNNNNRTG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	2 cut(s)	225, 475
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	1 cut(s)	599
NlaIII	CATG	3 cut(s)	104, 254, 562
NspV	TTCGAA	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	161, 299, 486
PkrI	GCNGC	2 cut(s)	20, 784
PleI	GAGTC	2 cut(s)	395, 573
PpsI	GAGTC	2 cut(s)	395, 573
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	3 cut(s)	50, 473, 740
RsaNI	GTAC	3 cut(s)	49, 472, 739
RseI	CAYNNNNRTG	1 cut(s)	528
SatI	GCNGC	2 cut(s)	19, 783
Sau3AI	GATC	1 cut(s)	599
SchI	GAGTC	2 cut(s)	395, 574
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	2 cut(s)	328, 362
SmoI	CTYRAG	2 cut(s)	328, 362
Sse9I	AATT	7 cut(s)	225, 239, 475, 497, 510, 621, 696
SspMI	CTAG	3 cut(s)	176, 503, 627
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	97, 430
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	131
TasI	AATT	7 cut(s)	225, 239, 475, 497, 510, 621, 696
TatI	WGTACW	2 cut(s)	471, 738
TfiI	GAWTC	3 cut(s)	161, 299, 486
TscAI	CASTG	2 cut(s)	100, 315
TseI	GCWGC	2 cut(s)	18, 782
TspDTI	ATGAA	3 cut(s)	183, 309, 600
TspRI	CASTG	2 cut(s)	100, 315
VneI	GTGCAC	1 cut(s)	592
XapI	RAATTY	2 cut(s)	239, 510
XspI	CTAG	3 cut(s)	176, 503, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.