Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002381.1

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

33036 .. 34960

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002381.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggagaagaacaaagtctcaagagtttgtgttacaggtggttctggatatattggctgttggctagtaaaaacgctcctagagaagggccacacagtccatgccactctcagaaacttggaggatgcatcaaaagtaggccttctgaagtctctccccaatgcagacaccaatttgttgctgttcaaagctgatatatacgatcctaatgagttcgagcctgcaattgaagggtgtgagtttgtttttcatgttgcaactcccatgcaacatgatccccaaaactcccagtacaaagacacagctgaagctgctgttgccggggtgagaagcattgctgattcttgcattcgatcgcagacagttaagcgactcatctacactgcaagcatactttctatgtccccaagaaaggatgatggagttggattcagacccttacttgatgagtcatgttggacaccacttgatgcctcatctacttatggcaatgctatcacgatggggtacattaaatcaaagaccttagctgagaaagcagtgctgagccacaatgactttgatgatggtaaattagaagtggtaactcttccttgtggcttagtgggaggagaaagtcttctttcatatttgcctgcaagtgtgggagtgattctggcacaacttactgaggacttgttttcttgcaatgccttaaaattaatgcaagaatttatgggatcagttcctctggtgcacattgatgatgtttgccaagcacatatcttctgcatggaacagccatcaatgaaaggcagattctgttgtgcagttgcctgtcactctatcaaagaaattgcaatatacttccaagaaacttacccagaatacaagatacaaaaaaaattgaccgaagggcctgaagaaggaagccaaagtgatttcagtaagctgaagaagatgggctttgagtataagtatggcatgaaggacatactagatgacagtgtaacatgggcaaagaagttaaatgggagctctctttctcaagtagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

345

Amino Acids

37.97

Weight (kDa)

5.56

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	197, 269, 727
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	4 cut(s)	167, 327, 921, 953
AfaI	GTAC	2 cut(s)	293, 509
AfiI	CCNNNNNNNGG	3 cut(s)	85, 412, 905
AgsI	TTSAA	2 cut(s)	187, 230
AluBI	AGCT	6 cut(s)	191, 305, 311, 530, 931, 1017
AluI	AGCT	6 cut(s)	191, 305, 311, 530, 931, 1017
Alw21I	GWGCWC	2 cut(s)	738, 1019
Alw26I	GTCTC	2 cut(s)	22, 156
Alw44I	GTGCAC	1 cut(s)	734
AlwI	GGATC	3 cut(s)	197, 269, 727
AlwNI	CAGNNNCTG	1 cut(s)	801
AoxI	GGCC	3 cut(s)	88, 139, 896
ApaLI	GTGCAC	1 cut(s)	734
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	710
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	88, 896
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	1019
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	2 cut(s)	738, 1019
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	5 cut(s)	413, 496, 560, 790, 934
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	22, 156
BfaI	CTAG	3 cut(s)	65, 80, 977
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	88, 896
BmrFI	CCNGG	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	3 cut(s)	115, 137, 460
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	526
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	4, 1011
BpuMI	CCSGG	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 412, 905
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	3 cut(s)	333, 496, 694
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	130, 421
BseLI	CCNNNNNNNGG	3 cut(s)	85, 412, 905
BseMI	GCAATG	3 cut(s)	333, 496, 694
BseMII	CTCAG	4 cut(s)	124, 522, 536, 660
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	624
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	828
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	90, 141, 898
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	738, 1019
BsiSI	CCGG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	85, 412, 905
BsmAI	GTCTC	2 cut(s)	22, 156
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	90, 141, 898
Bsp1286I	GDGCHC	2 cut(s)	738, 1019
Bsp143I	GATC	4 cut(s)	202, 274, 353, 719
Bsp1720I	GCTNAGC	1 cut(s)	545
BspANI	GGCC	3 cut(s)	90, 141, 898
BspCNI	CTCAG	4 cut(s)	123, 523, 537, 661
BspPI	GGATC	3 cut(s)	197, 269, 727
BsrDI	GCAATG	3 cut(s)	333, 496, 694
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	202, 274, 353, 719
Bst4CI	ACNGT	3 cut(s)	97, 364, 986
Bst6I	CTCTTC	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	222, 388, 636
BstDEI	CTNAG	6 cut(s)	110, 526, 531, 545, 601, 669
BstENI	CCTNNNNNAGG	2 cut(s)	83, 903
BstF5I	GGATG	2 cut(s)	130, 421
BstKTI	GATC	4 cut(s)	205, 277, 356, 722
BstMAI	GTCTC	2 cut(s)	22, 156
BstMBI	GATC	4 cut(s)	202, 274, 353, 719
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 317, 536
BstSCI	CCNGG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	90, 141, 898
BtsCI	GGATG	2 cut(s)	130, 421
BtsI	GCAGTG	2 cut(s)	381, 546
BtsIMutI	CAGTG	3 cut(s)	381, 546, 991
Cac8I	GCNNGC	3 cut(s)	222, 388, 636
CaiI	CAGNNNCTG	1 cut(s)	801
Cfr13I	GGNCC	2 cut(s)	88, 896
Csp6I	GTAC	2 cut(s)	292, 508
CviAII	CATG	8 cut(s)	101, 251, 265, 272, 453, 772, 964, 993
CviQI	GTAC	2 cut(s)	292, 508
DdeI	CTNAG	6 cut(s)	110, 526, 531, 545, 601, 669
DpnI	GATC	4 cut(s)	204, 276, 355, 721
DpnII	GATC	4 cut(s)	202, 274, 353, 719
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	1017
Eco147I	AGGCCT	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	1019
Eco53kI	GAGCTC	1 cut(s)	1017
Eco57I	CTGAAG	4 cut(s)	167, 327, 921, 953
EcoICRI	GAGCTC	1 cut(s)	1017
EcoNI	CCTNNNNNAGG	2 cut(s)	83, 903
EcoO109I	RGGNCCY	1 cut(s)	896
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	1019
FaeI	CATG	8 cut(s)	104, 254, 268, 275, 456, 775, 967, 996
FalI	AAGNNNNNCTT	4 cut(s)	126, 158, 929, 961
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	8 cut(s)	100, 250, 264, 271, 452, 771, 963, 992
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	137, 428
FriOI	GRGCYC	1 cut(s)	1019
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	3 cut(s)	65, 80, 977
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	90, 141, 898
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	8 cut(s)	104, 254, 268, 275, 456, 775, 967, 996
HinfI	GANTC	6 cut(s)	341, 372, 429, 449, 652, 798
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	3 cut(s)	113, 147, 434
Hpy188III	TCNNGA	3 cut(s)	21, 45, 499
Hpy8I	GTNNAC	1 cut(s)	736
HpyAV	CCTTC	6 cut(s)	79, 152, 224, 887, 899, 961
HpyCH4III	ACNGT	3 cut(s)	97, 364, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 317, 536
HpyF3I	CTNAG	6 cut(s)	110, 526, 531, 545, 601, 669
Hsp92II	CATG	8 cut(s)	104, 254, 268, 275, 456, 775, 967, 996
Kzo9I	GATC	4 cut(s)	202, 274, 353, 719
LmnI	GCTCC	2 cut(s)	81, 1014
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	115, 137, 460
MaeI	CTAG	3 cut(s)	65, 80, 977
MaeIII	GTNAC	4 cut(s)	31, 583, 818, 988
MalI	GATC	4 cut(s)	204, 276, 355, 721
MboI	GATC	4 cut(s)	202, 274, 353, 719
MboII	GAAGA	7 cut(s)	19, 581, 611, 757, 914, 946, 949
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	738, 1019
MluCI	AATT	7 cut(s)	172, 225, 572, 698, 710, 834, 884
MlyI	GAGTC	2 cut(s)	366, 458
MmeI	TCCRAC	2 cut(s)	406, 437
MnlI	CCTC	5 cut(s)	115, 484, 602, 664, 738
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	6 cut(s)	366, 513, 695, 701, 1007, 1036
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	311, 317, 536
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	4 cut(s)	202, 274, 353, 719
NlaIII	CATG	8 cut(s)	104, 254, 268, 275, 456, 775, 967, 996
NmuCI	GTSAC	1 cut(s)	818
NsiI	ATGCAT	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	141
PctI	GAATGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	4 cut(s)	341, 429, 652, 798
PkrI	GCNGC	1 cut(s)	313
Ple19I	CGATCG	1 cut(s)	356
PleI	GAGTC	2 cut(s)	366, 457
PpsI	GAGTC	2 cut(s)	366, 457
PshBI	ATTAAT	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	1019
PspPI	GGNCC	2 cut(s)	88, 896
PstNI	CAGNNNCTG	1 cut(s)	801
PvuI	CGATCG	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	293, 509
RsaNI	GTAC	2 cut(s)	292, 508
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	1 cut(s)	1019
SaqAI	TTAA	6 cut(s)	366, 513, 695, 701, 1007, 1036
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	4 cut(s)	202, 274, 353, 719
Sau96I	GGNCC	2 cut(s)	88, 896
SchI	GAGTC	2 cut(s)	366, 458
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	2 cut(s)	738, 1019
SetI	ASST	8 cut(s)	40, 193, 307, 313, 527, 532, 933, 1019
SfaNI	GCATC	3 cut(s)	115, 137, 460
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	2 cut(s)	19, 1026
SmoI	CTYRAG	2 cut(s)	19, 1026
Sse9I	AATT	7 cut(s)	172, 225, 572, 698, 710, 834, 884
SseBI	AGGCCT	1 cut(s)	141
SspMI	CTAG	3 cut(s)	65, 80, 977
SstI	GAGCTC	1 cut(s)	1019
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	3 cut(s)	97, 364, 986
TaqI	TCGA	2 cut(s)	216, 352
TaqII	GACCGA	1 cut(s)	905
TasI	AATT	7 cut(s)	172, 225, 572, 698, 710, 834, 884
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	4 cut(s)	341, 429, 652, 798
Tru1I	TTAA	6 cut(s)	366, 513, 695, 701, 1007, 1036
Tru9I	TTAA	6 cut(s)	366, 513, 695, 701, 1007, 1036
TscAI	CASTG	3 cut(s)	388, 546, 991
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	239, 615, 803, 980
TspRI	CASTG	3 cut(s)	388, 546, 991
VneI	GTGCAC	1 cut(s)	734
VspI	ATTAAT	1 cut(s)	701
XagI	CCTNNNNNAGG	2 cut(s)	83, 903
XapI	RAATTY	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	3 cut(s)	65, 80, 977
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.