Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Reverse (-)

16575826 .. 16576809

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGCATTGTGGAGTCTTGCATCAAATCAGGCACCGTAAAACTACTCATCTTCACAGCATCTGTGGTGGCTGCATCACCAATTAAAGACTCTGGATATGGCTTTAAGGAACTCATGGACGAGTCTTGTTGGACTCCCTTCAATCTTTCATTTCCTACTCCCTTCAATCTTTCATTTCCTCATGCCAATGAGGGTTTGATGGCACATACACACACAAATACCTTTTCGCAGAAAGAATTGTTGGGGCATAATGAGAATGGTGTTCTTGAGCTTGATGTGGTCAGCATTGCTTGTGGTCTTGTGGGAGGGGACACCCTTCTTCCTAGTATGCCTGAGAGCTGGGAGTGCTCGATCATCTCACAGGTCACAAACAATAAGGGGACTTATCATGTTCTAAGATTTTTGACCCAATTGCTGGGTAAAGTTCCAATTGTGCATATTGAAGATGTCTGTGAGGCACACATTTTGTGCATGGAGAAGCCCCTAAATCACTGGCAGATTTCTATGTGCTACTACATATATGTCATTCGCATAAATTGGTTCTCACTAGAAAAAACATTATCCGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

191

Amino Acids

21.18

Weight (kDa)

5.54

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	563
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	142, 166, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	2 cut(s)	271, 339
AluI	AGCT	2 cut(s)	271, 339
Alw21I	GWGCWC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	324, 548
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	34
BmsI	GCATC	3 cut(s)	30, 68, 83
BpuEI	CTTGAG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	563
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	58
BseYI	CCCAGC	2 cut(s)	339, 415
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	323, 394
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmFI	GGGAC	2 cut(s)	323, 394
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	563
BspLI	GGNNCC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	333, 395
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	490
CaiI	CAGNNNCTG	1 cut(s)	62
CviAII	CATG	4 cut(s)	115, 182, 389, 472
CviJI	RGCY	5 cut(s)	71, 102, 271, 339, 481
CviKI_1	RGCY	5 cut(s)	71, 102, 271, 339, 481
DdeI	CTNAG	2 cut(s)	333, 395
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
FaeI	CATG	4 cut(s)	118, 185, 392, 475
FaqI	GGGAC	2 cut(s)	323, 394
FatI	CATG	4 cut(s)	114, 181, 388, 471
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	324, 548
GluI	GCNGC	1 cut(s)	72
GsaI	CCCAGC	2 cut(s)	343, 419
HapII	CCGG	1 cut(s)	564
Hin1II	CATG	4 cut(s)	118, 185, 392, 475
HinfI	GANTC	4 cut(s)	14, 89, 122, 133
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	93, 266, 564
HpyAV	CCTTC	3 cut(s)	148, 172, 326
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	21, 74, 436, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	333, 395
Hsp92II	CATG	4 cut(s)	118, 185, 392, 475
Kpn2I	TCCGGA	1 cut(s)	563
Kzo9I	GATC	1 cut(s)	351
LpnPI	CCDG	7 cut(s)	15, 78, 325, 345, 347, 401, 478
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	3 cut(s)	30, 68, 83
MaeI	CTAG	2 cut(s)	324, 548
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	3 cut(s)	43, 311, 455
MfeI	CAATTG	2 cut(s)	410, 429
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	6 cut(s)	81, 236, 410, 429, 535, 568
MlyI	GAGTC	4 cut(s)	23, 83, 127, 131
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	4 cut(s)	184, 189, 299, 448
MroI	TCCGGA	1 cut(s)	563
MseI	TTAA	3 cut(s)	84, 105, 571
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	564
MunI	CAATTG	2 cut(s)	410, 429
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	4 cut(s)	118, 185, 392, 475
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	4 cut(s)	22, 83, 127, 130
PpsI	GAGTC	4 cut(s)	22, 83, 127, 130
PspFI	CCCAGC	2 cut(s)	339, 415
PspN4I	GGNNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	84, 105, 571
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	351
SchI	GAGTC	4 cut(s)	23, 83, 127, 131
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	4 cut(s)	224, 273, 341, 366
SfaNI	GCATC	3 cut(s)	30, 68, 83
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	81, 236, 410, 429, 535, 568
SspMI	CTAG	2 cut(s)	324, 548
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	350
TasI	AATT	6 cut(s)	81, 236, 410, 429, 535, 568
Tru1I	TTAA	3 cut(s)	84, 105, 571
Tru9I	TTAA	3 cut(s)	84, 105, 571
TscAI	CASTG	1 cut(s)	497
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	138, 162
TspRI	CASTG	1 cut(s)	497
Van91I	CCANNNNNTGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	324, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.