Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Reverse (-)

11149000 .. 11150537

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG150300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCCAATGGAGAAGAACAAAGTTTCTAGAGTTTGTGTTACAGGTGGTTCTGGATATATTGGCTGTTGGCTTGTCAAAAAGCTCCTGGAGAATGGCCATACAGTCCGTGCCACTTACAAGGACATAGGTGAAGCAGCTGTTGCTGGGGTGAGAAGCATTGCTGATTCTTGCATTCTATCGCAGACAGTTAAGCGACTCATCTACACTGCAAACATACTTTCTATGTCCCCAAGAAGAGATGATGGAGTTGGATTTAAAGCCTGCCTTGATGAATCATGTTGGACACCACTTGATGCATCGTATACTTATGGCAATGCTTTCACAGTGAAAGCAGTGCTGAGCTATAACGACTTTGATGATGGGATTTTAGAAGTGGTAACTCTTCCTTATGGCTTAGTGGGAGGAGAAAGTCTTCTTTCATATTTGCCTATAAGCGTGGGAGCGATTCTGTCACAACTTACTGGGGACTTATTTTCTGGCAATTCATTAAACCTTCTGCAAGAATGTATCGGATCGGTTCCTATAGCGCACGTTAATAATGTTTGCCAAGCCCATTTTTTCTGCATGGAACAACTATCAATGAGAGGTAGATTCTGTTGTGCAGTTTCCGGTCTCTCTATCAAAGAAATGGCAATGTACTTCCAAAAGACTTACCCTGAATACAACATAGCTAAAGAATTGACTCAAGGGCCACAAGTAGGAAGCAAAGGTGACTTCAGTAAGCTGATGAAGATGGGTTTTGAGTACAAGTATGGCATACAGGACATACTAGATGACATTGTGGCATGGGCAAAGAAGTTAAATGGGAGCTCTCTTTCTCAAGTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

276

Amino Acids

30.11

Weight (kDa)

6.31

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	700
AfaI	GTAC	2 cut(s)	638, 746
AfiI	CCNNNNNNNGG	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	6 cut(s)	82, 137, 342, 671, 724, 810
AluI	AGCT	6 cut(s)	82, 137, 342, 671, 724, 810
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	2 cut(s)	94, 689
ApeKI	GCWGC	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	140, 160, 722
BalI	TGGCCA	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	812
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	3 cut(s)	236, 353, 727
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	2 cut(s)	27, 770
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	283, 305
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	669, 804
BsaI	GGTCTC	1 cut(s)	617
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	3 cut(s)	156, 319, 639
BseBI	CCWGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	3 cut(s)	156, 319, 639
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	96, 691
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	2 cut(s)	211, 479
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	2 cut(s)	211, 479
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	96, 691
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	1 cut(s)	512
Bsp1720I	GCTNAGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	96, 691
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	3 cut(s)	156, 319, 639
BsrI	ACTGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	512
BssNAI	GTATAC	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	103, 187, 325
Bst6I	CTCTTC	2 cut(s)	229, 387
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	338, 394
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	1 cut(s)	515
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	404
BstZ17I	GTATAC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	96, 691
BtsI	GCAGTG	2 cut(s)	204, 339
BtsIMutI	CAGTG	3 cut(s)	204, 330, 339
Cac8I	GCNNGC	1 cut(s)	262
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	637, 745
CviAII	CATG	3 cut(s)	276, 565, 786
CviQI	GTAC	2 cut(s)	637, 745
DdeI	CTNAG	2 cut(s)	338, 394
DpnI	GATC	1 cut(s)	514
DpnII	GATC	1 cut(s)	512
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	229, 387
EarI	CTCTTC	2 cut(s)	229, 387
Ecl136II	GAGCTC	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	812
Eco31I	GGTCTC	1 cut(s)	617
Eco53kI	GAGCTC	1 cut(s)	810
Eco57I	CTGAAG	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	812
FaeI	CATG	3 cut(s)	279, 568, 789
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	211, 479
FatI	CATG	3 cut(s)	275, 564, 785
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	27, 770
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	96, 691
HapII	CCGG	1 cut(s)	609
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	279, 568, 789
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	6 cut(s)	164, 195, 272, 445, 591, 682
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	3 cut(s)	140, 160, 722
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	512
Hpy188III	TCNNGA	2 cut(s)	27, 51
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	3 cut(s)	103, 187, 325
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	6 cut(s)	171, 209, 296, 499, 564, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	338, 394
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	279, 568, 789
HspAI	GCGC	1 cut(s)	527
Kzo9I	GATC	1 cut(s)	512
LmnI	GCTCC	3 cut(s)	87, 440, 807
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	2 cut(s)	283, 305
MaeI	CTAG	2 cut(s)	27, 770
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	4 cut(s)	37, 376, 450, 710
MalI	GATC	1 cut(s)	514
MboI	GATC	1 cut(s)	512
MboII	GAAGA	5 cut(s)	25, 246, 374, 404, 742
MhlI	GDGCHC	1 cut(s)	812
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	481, 677
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	189, 676
MmeI	TCCRAC	2 cut(s)	229, 260
MnlI	CCTC	2 cut(s)	395, 578
Mox20I	TGGCCA	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	5 cut(s)	189, 255, 488, 534, 800
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	279, 568, 789
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	450, 710
NsiI	ATGCAT	1 cut(s)	298
PctI	GAATGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	164, 272, 445, 591
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	2 cut(s)	189, 676
PpsI	GAGTC	2 cut(s)	189, 676
Psp124BI	GAGCTC	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	638, 746
RsaNI	GTAC	2 cut(s)	637, 745
SacI	GAGCTC	1 cut(s)	812
SaqAI	TTAA	5 cut(s)	189, 255, 488, 534, 800
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	512
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	189, 676
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	2 cut(s)	283, 305
SfcI	CTRYAG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	684, 819
SmoI	CTYRAG	2 cut(s)	684, 819
Sse9I	AATT	2 cut(s)	481, 677
SspMI	CTAG	2 cut(s)	27, 770
SstI	GAGCTC	1 cut(s)	812
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	103, 187, 325
TaiI	ACGT	1 cut(s)	534
TasI	AATT	2 cut(s)	481, 677
TatI	WGTACW	2 cut(s)	636, 744
TfiI	GAWTC	4 cut(s)	164, 272, 445, 591
Tru1I	TTAA	5 cut(s)	189, 255, 488, 534, 800
Tru9I	TTAA	5 cut(s)	189, 255, 488, 534, 800
TscAI	CASTG	3 cut(s)	211, 330, 339
TseFI	GTSAC	2 cut(s)	450, 710
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	450, 710
TspDTI	ATGAA	4 cut(s)	285, 408, 474, 743
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	211, 330, 339
XbaI	TCTAGA	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	27, 770
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.