Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

11855674 .. 11856963

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTCTCCATATATGATGCAGATGATGCATCCAAAGTAGGCCTTCTCAAGTCCCTCCCTAATGCAGACAGCAAATTGTTGCTGTTCCAAGCTGACATATATGACCCCAATGAGTTTCAACCCGCCATCCAAGGGTGTGAGTTTGTCTTTCATGTGGCCACTCCAAAGCAGCATGTCAACCAAAGCTCTCAGTACAAGGACACAGTTGAAGCTGCTGTTGCTGGGGTTAGGACCATTGCTGAATCTTGCATTAGCTCACAGACCGTTAAGCGACTCATCTACACTGCAAGCATGCTAGCTGTGTCACCGAGGAGAGACGACGGGGTTGGATTCAAACCCTGCCTTGATGAATCATGTTGGACACCTCTTGATGTCTCATTTACTTATGCCACTGATTTTTCAATGGGGTATATCATATCAAAGACATTAGCAGAGAGAGCAGTGCTGAGCTATAATGACATTGATAATGGTAAACTGGAAGTGGTAACGCTTCCTTGTGGCTTGGTGGGAGGAGAAACTCTTCTGTCATATTTGGCTACTAGTGTGGGAGTACTTATATCACAACTTACTGGGGACTCTTTTGGTTACAATGGATTAAAATTGATGCAAGAAGTTAACGGTTCGGTTCCTCTTGTACACATTGAAGATGTCTGCCAAGCACATATCTTCTGCATGGAACAACCATCCATGAGAGGTAGATTCTGCTGTGCAGTTGCCAGTCCGAATATCAACGAAATTGCGAGCTACTTCCAAGAAAATTATTCAGAACACAAGATAGCAAAAGAATTCACTGAAAGCATCGAAAGACTAGAAGAAGGAAGCAAATGTGACTTCAGTAAGCTGATGAAGATGGGTTTTGAGTACAGGTATAGCATGAAGAATATACTAGATGACAGTGCAACAAGTGGAAGGAGGTTAACTAGGAGCTCTTTTTCTCAACTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

316

Amino Acids

34.83

Weight (kDa)

4.99

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	785
AcuI	CTGAAG	1 cut(s)	817
AfaI	GTAC	4 cut(s)	194, 552, 636, 863
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	119, 209, 334, 402, 644
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	9 cut(s)	92, 186, 212, 255, 299, 450, 744, 841, 927
AluI	AGCT	9 cut(s)	92, 186, 212, 255, 299, 450, 744, 841, 927
Alw21I	GWGCWC	1 cut(s)	929
Alw26I	GTCTC	3 cut(s)	10, 309, 379
AoxI	GGCC	2 cut(s)	40, 156
ApeKI	GCWGC	2 cut(s)	169, 212
ApoI	RAATTY	1 cut(s)	785
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	297
AsuNHI	GCTAGC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	929
Bbv12I	GWGCWC	1 cut(s)	929
BbvI	GCAGC	2 cut(s)	181, 199
BccI	CCATC	3 cut(s)	134, 691, 844
BcoDI	GTCTC	3 cut(s)	10, 309, 379
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	5 cut(s)	296, 540, 809, 887, 921
BisI	GCNGC	2 cut(s)	170, 213
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	2 cut(s)	171, 214
BmcAI	AGTACT	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	5 cut(s)	7, 16, 38, 594, 807
BmtI	GCTAGC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	130, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	3 cut(s)	480, 574, 717
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	130, 308
BseGI	GGATG	3 cut(s)	29, 126, 683
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	203, 437
BseNI	ACTGG	3 cut(s)	480, 574, 717
BseRI	GAGGAG	2 cut(s)	325, 525
BseXI	GCAGC	2 cut(s)	181, 199
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	2 cut(s)	42, 158
BsiHKAI	GWGCWC	1 cut(s)	929
BslFI	GGGAC	2 cut(s)	37, 587
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	10, 309, 379
BsmBI	CGTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	37, 587
BsnI	GGCC	2 cut(s)	42, 158
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	929
Bsp1407I	TGTACA	1 cut(s)	634
Bsp1720I	GCTNAGC	1 cut(s)	446
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	42, 158
BspCNI	CTCAG	2 cut(s)	202, 438
BspLI	GGNNCC	1 cut(s)	627
BspOI	GCTAGC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	634
BsrI	ACTGG	3 cut(s)	480, 574, 717
BssECI	CCNNGG	2 cut(s)	130, 308
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	205, 265, 620, 896
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	634
BstC8I	GCNNGC	4 cut(s)	289, 293, 297, 742
BstDEI	CTNAG	2 cut(s)	189, 446
BstF5I	GGATG	3 cut(s)	29, 126, 683
BstMAI	GTCTC	3 cut(s)	10, 309, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 218, 437
BstNSI	RCATGY	2 cut(s)	176, 295
BstV1I	GCAGC	2 cut(s)	181, 199
BsuRI	GGCC	2 cut(s)	42, 158
BtsCI	GGATG	3 cut(s)	29, 126, 683
BtsI	GCAGTG	2 cut(s)	282, 447
BtsIMutI	CAGTG	5 cut(s)	282, 390, 447, 789, 901
Cac8I	GCNNGC	4 cut(s)	289, 293, 297, 742
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	4 cut(s)	193, 551, 635, 862
CviAII	CATG	7 cut(s)	152, 173, 292, 354, 673, 688, 874
CviQI	GTAC	4 cut(s)	193, 551, 635, 862
DdeI	CTNAG	2 cut(s)	189, 446
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	927
Eco130I	CCWWGG	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	929
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	927
Eco57I	CTGAAG	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	927
EcoRI	GAATTC	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	929
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	7 cut(s)	155, 176, 295, 357, 676, 691, 877
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	2 cut(s)	37, 587
FatI	CATG	7 cut(s)	151, 172, 291, 353, 672, 687, 873
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	170, 213
FokI	GGATG	3 cut(s)	16, 113, 670
FriOI	GRGCYC	1 cut(s)	929
Fsp4HI	GCNGC	2 cut(s)	170, 213
FspBI	CTAG	5 cut(s)	296, 540, 809, 887, 921
GluI	GCNGC	2 cut(s)	170, 213
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	42, 158
Hin1II	CATG	7 cut(s)	155, 176, 295, 357, 676, 691, 877
HincII	GTYRAC	3 cut(s)	178, 616, 918
HindII	GTYRAC	3 cut(s)	178, 616, 918
HinfI	GANTC	6 cut(s)	242, 273, 330, 350, 575, 699
HpaI	GTTAAC	2 cut(s)	616, 918
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	5 cut(s)	178, 473, 616, 637, 918
Hpy188I	TCNGA	2 cut(s)	723, 766
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	5 cut(s)	178, 473, 616, 637, 918
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	53, 809, 903
HpyCH4III	ACNGT	4 cut(s)	205, 265, 620, 896
HpyCH4V	TGCA	9 cut(s)	20, 29, 65, 249, 287, 607, 672, 710, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 218, 437
HpyF3I	CTNAG	2 cut(s)	189, 446
Hsp92II	CATG	7 cut(s)	155, 176, 295, 357, 676, 691, 877
KspAI	GTTAAC	2 cut(s)	616, 918
LmnI	GCTCC	1 cut(s)	924
LpnPI	CCDG	6 cut(s)	207, 352, 461, 555, 730, 850
Lsp1109I	GCAGC	2 cut(s)	181, 199
LweI	GCATC	5 cut(s)	7, 16, 38, 594, 807
MaeI	CTAG	5 cut(s)	296, 540, 809, 887, 921
MaeIII	GTNAC	4 cut(s)	303, 484, 584, 827
MboII	GAAGA	6 cut(s)	512, 656, 658, 824, 859, 889
MhlI	GDGCHC	1 cut(s)	929
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	5 cut(s)	74, 599, 735, 757, 785
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	2 cut(s)	267, 569
MmeI	TCCRAC	2 cut(s)	307, 338
MnlI	CCTC	7 cut(s)	65, 303, 375, 503, 639, 686, 906
Mox20I	TGGCCA	1 cut(s)	158
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	5 cut(s)	267, 596, 615, 917, 946
Msp20I	TGGCCA	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	26, 218, 437
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	7 cut(s)	155, 176, 295, 357, 676, 691, 877
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	2 cut(s)	303, 827
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	2 cut(s)	176, 295
PaeI	GCATGC	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	242, 330, 350, 699
PkrI	GCNGC	2 cut(s)	171, 214
PleI	GAGTC	2 cut(s)	267, 569
PpsI	GAGTC	2 cut(s)	267, 569
Psp124BI	GAGCTC	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	4 cut(s)	194, 552, 636, 863
RsaNI	GTAC	4 cut(s)	193, 551, 635, 862
SacI	GAGCTC	1 cut(s)	929
SaqAI	TTAA	5 cut(s)	267, 596, 615, 917, 946
SatI	GCNGC	2 cut(s)	170, 213
Sau96I	GGNCC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	552
SchI	GAGTC	2 cut(s)	267, 569
SduI	GDGCHC	1 cut(s)	929
SfaNI	GCATC	5 cut(s)	7, 16, 38, 594, 807
SinI	GGWCC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	539
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	5 cut(s)	74, 599, 735, 757, 785
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	5 cut(s)	296, 540, 809, 887, 921
SstI	GAGCTC	1 cut(s)	929
StuI	AGGCCT	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	4 cut(s)	205, 265, 620, 896
TaqI	TCGA	1 cut(s)	801
TasI	AATT	5 cut(s)	74, 599, 735, 757, 785
TatI	WGTACW	4 cut(s)	192, 550, 634, 861
TfiI	GAWTC	4 cut(s)	242, 330, 350, 699
Tru1I	TTAA	5 cut(s)	267, 596, 615, 917, 946
Tru9I	TTAA	5 cut(s)	267, 596, 615, 917, 946
TscAI	CASTG	5 cut(s)	289, 397, 447, 796, 901
TseFI	GTSAC	2 cut(s)	303, 827
TseI	GCWGC	2 cut(s)	169, 212
Tsp45I	GTSAC	2 cut(s)	303, 827
TspDTI	ATGAA	4 cut(s)	140, 363, 860, 890
TspRI	CASTG	5 cut(s)	289, 397, 447, 796, 901
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	2 cut(s)	176, 295
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	5 cut(s)	296, 540, 809, 887, 921
ZrmI	AGTACT	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.