Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

24179552 .. 24181582

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1103800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTTACTCCGTGTGTTACAGATGATGCATCAAAAGTCGGGCTTCTCAAGTCCCTTCCTCATGCGGACACCAAATTGTTGCTGTTCCAAGCTGACATATATGACCCTCAAGAGTTTGAGCATGCCATTGAAGGCTGTGAGTTTGTTTTCCATGTTGCCACTCCGATGCAGCATAACAACCTAAGCTCTCAGTACAAGGACACAGCTGAAGCTGCTGTTGCTGGGGTGAGAATCATTGCTGATTCCTGCATTCGTTCGCAGACCGTCAAGCGACTCATCTACACTGCAAGCGTACTAGCTGCGTCGCCTCGGACAGAAGATGGGGCTGGATTCAAAGCCTACCTTGATGAATCATGTTGGACACCTCTTGATGTCTCATTTCCCCATGGCACTGATTTCACAATGGGGTATATCGTATCAAAGACATTAGCAGAGAACGCAGTGCTGAGCTACAACGTAATTGATGGTGGTAAATTAGAAGTGGTAACTCTTCCTTGTGGCCTAGTAGGAGGAGAAACTCTTCTGCTGATTTTGCCTCCAACTGTGGGAGTAGTTTTATCACAACTTACCGGGGACTCGAACCGTTACAATTCATTAAAATTCATGCAAGAAGTTATCGGTTCTGTTCCTCTAGTACACATTGAAGATGTTTGCCGAGCACATATCTTCTGTATGGAACAACCGTCGATGAGAGGCAGATTCTGCTGTGCAGTTGCCAGTCCAAGTATCAAAGAAATCGCTGCCTGCTTCCAAGAAAACTACCCGGAATACAAGATAGCAAAAGAATTCACCGAAGGACCAGAAGGAGGAATCAAATGTGACTTTACTAAGCTGGTGAAGATCGGTTTTGAGTACAAGTATGGCATGAAGAACATACTTGATGACAGTGTAGTAAGTGGAAGGAGGTTATCAAAGAGCTCTCTTTCTCAACTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

313

Amino Acids

34.13

Weight (kDa)

5.32

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	26 - 173	1.9e-09	3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase	PF01370	26 - 229	1.7e-08	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	599, 785
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	4 cut(s)	194, 294, 636, 854
AfiI	CCNNNNNNNGG	2 cut(s)	545, 806
AgsI	TTSAA	3 cut(s)	131, 334, 644
AluBI	AGCT	8 cut(s)	92, 186, 206, 212, 299, 450, 832, 918
AluI	AGCT	8 cut(s)	92, 186, 206, 212, 299, 450, 832, 918
Alw21I	GWGCWC	2 cut(s)	661, 920
Alw26I	GTCTC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	702
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	4 cut(s)	169, 212, 299, 740
ApoI	RAATTY	2 cut(s)	599, 785
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	797
AsuC2I	CCSGG	2 cut(s)	571, 764
AsuHPI	GGTGA	3 cut(s)	238, 781, 847
AvaII	GGWCC	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	920
Bbv12I	GWGCWC	2 cut(s)	661, 920
BbvI	GCAGC	4 cut(s)	181, 199, 286, 727
BccI	CCATC	2 cut(s)	314, 458
BcnI	CCSGG	2 cut(s)	571, 764
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	3 cut(s)	296, 503, 632
BisI	GCNGC	4 cut(s)	170, 213, 300, 741
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	4 cut(s)	171, 214, 301, 742
Bme1390I	CCNGG	2 cut(s)	571, 764
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	797
BmrFI	CCNGG	2 cut(s)	571, 764
BmsI	GCATC	3 cut(s)	16, 38, 156
Bpu10I	CCTNAGC	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	2 cut(s)	32, 93
BpuMI	CCSGG	2 cut(s)	571, 764
BsaJI	CCNNGG	3 cut(s)	308, 385, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 806
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	308, 385, 570
BseLI	CCNNNNNNNGG	2 cut(s)	545, 806
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	203, 437
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	181, 199, 286, 727
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	661, 920
BsiSI	CCGG	2 cut(s)	570, 764
BslFI	GGGAC	2 cut(s)	37, 587
BslI	CCNNNNNNNGG	2 cut(s)	545, 806
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	37, 587
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	661, 920
Bsp143I	GATC	1 cut(s)	840
Bsp1720I	GCTNAGC	1 cut(s)	446
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	2 cut(s)	202, 438
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	3 cut(s)	308, 385, 570
BssMI	GATC	1 cut(s)	840
BssT1I	CCWWGG	1 cut(s)	385
Bst4CI	ACNGT	5 cut(s)	265, 544, 584, 684, 887
Bst6I	CTCTTC	2 cut(s)	495, 525
BstAPI	GCANNNNNTGC	1 cut(s)	702
BstC8I	GCNNGC	3 cut(s)	123, 289, 745
BstDEI	CTNAG	4 cut(s)	182, 189, 446, 828
BstDSI	CCRYGG	1 cut(s)	385
BstKTI	GATC	1 cut(s)	843
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	840
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 218, 437, 532, 702
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	569, 762
BstV1I	GCAGC	4 cut(s)	181, 199, 286, 727
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	385
BtsI	GCAGTG	2 cut(s)	282, 447
BtsIMutI	CAGTG	4 cut(s)	282, 390, 447, 892
Cac8I	GCNNGC	3 cut(s)	123, 289, 745
CaiI	CAGNNNCTG	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	797
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	4 cut(s)	193, 293, 635, 853
CviAII	CATG	7 cut(s)	62, 122, 152, 354, 386, 604, 865
CviQI	GTAC	4 cut(s)	193, 293, 635, 853
DdeI	CTNAG	4 cut(s)	182, 189, 446, 828
DpnI	GATC	1 cut(s)	842
DpnII	GATC	1 cut(s)	840
Eam1104I	CTCTTC	2 cut(s)	495, 525
EarI	CTCTTC	2 cut(s)	495, 525
Ecl136II	GAGCTC	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	797
Eco53kI	GAGCTC	1 cut(s)	918
Eco57I	CTGAAG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	918
EcoRI	GAATTC	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	920
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	7 cut(s)	65, 125, 155, 357, 389, 607, 868
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 327, 359
FaqI	GGGAC	2 cut(s)	37, 587
FatI	CATG	7 cut(s)	61, 121, 151, 353, 385, 603, 864
Fnu4HI	GCNGC	4 cut(s)	170, 213, 300, 741
FriOI	GRGCYC	1 cut(s)	920
Fsp4HI	GCNGC	4 cut(s)	170, 213, 300, 741
FspBI	CTAG	3 cut(s)	296, 503, 632
GluI	GCNGC	4 cut(s)	170, 213, 300, 741
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	2 cut(s)	570, 764
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	7 cut(s)	65, 125, 155, 357, 389, 607, 868
HinfI	GANTC	8 cut(s)	231, 242, 273, 330, 350, 575, 699, 810
HpaII	CCGG	2 cut(s)	570, 764
HphI	GGTGA	3 cut(s)	238, 781, 847
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	2 cut(s)	165, 312
Hpy188III	TCNNGA	2 cut(s)	110, 368
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	2 cut(s)	307, 688
HpyAV	CCTTC	5 cut(s)	65, 125, 788, 797, 894
HpyCH4III	ACNGT	5 cut(s)	265, 544, 584, 684, 887
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	6 cut(s)	29, 169, 249, 287, 607, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 218, 437, 532, 702
HpyF3I	CTNAG	4 cut(s)	182, 189, 446, 828
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	7 cut(s)	65, 125, 155, 357, 389, 607, 868
Kzo9I	GATC	1 cut(s)	840
LpnPI	CCDG	9 cut(s)	207, 259, 312, 583, 730, 757, 777, 813, 818
Lsp1109I	GCAGC	4 cut(s)	181, 199, 286, 727
LweI	GCATC	3 cut(s)	16, 38, 156
MaeI	CTAG	3 cut(s)	296, 503, 632
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	5 cut(s)	4, 16, 484, 584, 818
MalI	GATC	1 cut(s)	842
MboI	GATC	1 cut(s)	840
MboII	GAAGA	7 cut(s)	329, 482, 512, 656, 658, 850, 880
MhlI	GDGCHC	2 cut(s)	661, 920
MluCI	AATT	6 cut(s)	74, 459, 473, 589, 599, 785
MlyI	GAGTC	2 cut(s)	267, 569
MmeI	TCCRAC	2 cut(s)	338, 563
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	596, 937
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	570, 764
MspR9I	CCNGG	2 cut(s)	571, 764
Mva1269I	GAATGC	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	212, 218, 437, 532, 702
NciI	CCSGG	2 cut(s)	571, 764
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	840
NlaIII	CATG	7 cut(s)	65, 125, 155, 357, 389, 607, 868
NmeAIII	GCCGAG	1 cut(s)	680
NmuCI	GTSAC	1 cut(s)	818
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	6 cut(s)	231, 242, 330, 350, 699, 810
PkrI	GCNGC	4 cut(s)	171, 214, 301, 742
PleI	GAGTC	2 cut(s)	267, 569
PpsI	GAGTC	2 cut(s)	267, 569
Psp124BI	GAGCTC	1 cut(s)	920
PspFI	CCCAGC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	797
PstNI	CAGNNNCTG	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	4 cut(s)	194, 294, 636, 854
RsaNI	GTAC	4 cut(s)	193, 293, 635, 853
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	920
SaqAI	TTAA	2 cut(s)	596, 937
SatI	GCNGC	4 cut(s)	170, 213, 300, 741
Sau3AI	GATC	1 cut(s)	840
Sau96I	GGNCC	1 cut(s)	797
SchI	GAGTC	2 cut(s)	267, 569
ScrFI	CCNGG	2 cut(s)	571, 764
SduI	GDGCHC	2 cut(s)	661, 920
SfaNI	GCATC	3 cut(s)	16, 38, 156
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	47, 108
SmoI	CTYRAG	2 cut(s)	47, 108
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	6 cut(s)	74, 459, 473, 589, 599, 785
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	3 cut(s)	296, 503, 632
SstI	GAGCTC	1 cut(s)	920
StyD4I	CCNGG	2 cut(s)	569, 762
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	5 cut(s)	265, 544, 584, 684, 887
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	578, 686
TasI	AATT	6 cut(s)	74, 459, 473, 589, 599, 785
TatI	WGTACW	3 cut(s)	192, 634, 852
TfiI	GAWTC	6 cut(s)	231, 242, 330, 350, 699, 810
Tru1I	TTAA	2 cut(s)	596, 937
Tru9I	TTAA	2 cut(s)	596, 937
TscAI	CASTG	4 cut(s)	289, 397, 447, 892
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	4 cut(s)	169, 212, 299, 740
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	4 cut(s)	363, 582, 592, 881
TspRI	CASTG	4 cut(s)	289, 397, 447, 892
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	2 cut(s)	599, 785
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	3 cut(s)	296, 503, 632
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.