Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007680.1

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1182

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 775 bp

acagtctaaccggagacctattttttccttaacacaaaatcagtacaaaaacacaactgaagctgctatagctggggcaaagagcatcgtagaggcttgtcttaaatcaggaacagttaggaggctaatctacactgcctccgtggttgctgcatctccccttaaagaagatggtagtggtttcaaagacttcatggatgaaacatgttggactcctctagatctcacagttgcttgttctaatgacttcctcaaggactatgaagattcaaagacactggcagagaaagaaatcttgagctatgtgaatcacaacaaaagaagtggacttgagattgtgagcttggcctgtggtcttgtgggaggggactcacttccatcattcacgcctgtaactgtagcttgtttagtttctcagcttacaaatagtgcaaatgagtacaattgtctgagattcttagaggaattgctagggaaaattccaatagtccatattgatgatgtttgtgatgctcatatcttctgcatggagagtccttcaataaatggtaggtttctgtgcacaagatcctatgtttcatctgcacaaattgctagttactatcagcaacattatccagaacttgaagtgaagcaagagtgtttggatttaccaaagaggcaaattggctggggttctaccaagcttagtgaggagggatttgtgtacaaatatgataccaagatgatattggatgattgcataacgtctgcaagaagatggggttgcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

257

Amino Acids

28.63

Weight (kDa)

5.33

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	3 cut(s)	45, 441, 708
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	185, 271, 541, 627
AluBI	AGCT	7 cut(s)	63, 72, 301, 343, 402, 419, 686
AluI	AGCT	7 cut(s)	63, 72, 301, 343, 402, 419, 686
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	562
AoxI	GGCC	1 cut(s)	346
ApaLI	GTGCAC	1 cut(s)	560
ApeKI	GCWGC	2 cut(s)	63, 150
ApoI	RAATTY	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	50, 137
BccI	CCATC	3 cut(s)	165, 386, 754
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	3 cut(s)	219, 471, 595
BfmI	CTRYAG	2 cut(s)	67, 397
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	2 cut(s)	64, 151
BlsI	GCNGC	2 cut(s)	65, 152
BmsI	GCATC	3 cut(s)	94, 162, 500
BpuEI	CTTGAG	3 cut(s)	237, 317, 351
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bse1I	ACTGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	203, 740
BseMII	CTCAG	2 cut(s)	429, 441
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	205, 708
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	2 cut(s)	50, 137
BseYI	CCCAGC	2 cut(s)	72, 670
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp1407I	TGTACA	1 cut(s)	706
Bsp143I	GATC	2 cut(s)	221, 567
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	428, 442
BspPI	GGATC	1 cut(s)	562
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	221, 567
Bst4CI	ACNGT	4 cut(s)	4, 116, 230, 398
BstAPI	GCANNNNNTGC	1 cut(s)	591
BstAUI	TGTACA	1 cut(s)	706
BstDEI	CTNAG	4 cut(s)	415, 450, 458, 687
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	203, 740
BstKTI	GATC	2 cut(s)	224, 570
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	221, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 591
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	67, 397
BstSLI	GKGCMC	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	50, 137
BstX2I	RGATCY	2 cut(s)	221, 567
BstYI	RGATCY	2 cut(s)	221, 567
BsuRI	GGCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	203, 740
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	133, 276
Csp6I	GTAC	3 cut(s)	44, 440, 707
CspCI	CAANNNNNGTGG	2 cut(s)	305, 340
CviAII	CATG	3 cut(s)	194, 205, 527
CviQI	GTAC	3 cut(s)	44, 440, 707
DdeI	CTNAG	4 cut(s)	415, 450, 458, 687
DpnI	GATC	2 cut(s)	223, 569
DpnII	GATC	2 cut(s)	221, 567
Eco31I	GGTCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	79
FaeI	CATG	3 cut(s)	197, 208, 530
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	3 cut(s)	193, 204, 526
Fnu4HI	GCNGC	2 cut(s)	64, 151
FokI	GGATG	2 cut(s)	210, 747
Fsp4HI	GCNGC	2 cut(s)	64, 151
FspBI	CTAG	3 cut(s)	219, 471, 595
GluI	GCNGC	2 cut(s)	64, 151
GsaI	CCCAGC	2 cut(s)	76, 674
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	3 cut(s)	197, 208, 530
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	6 cut(s)	212, 267, 308, 369, 454, 533
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	3 cut(s)	327, 562, 707
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	4 cut(s)	109, 219, 296, 618
Hpy8I	GTNNAC	3 cut(s)	327, 562, 707
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	4 cut(s)	4, 116, 230, 398
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	7 cut(s)	153, 432, 526, 562, 585, 742, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 591
HpyF3I	CTNAG	4 cut(s)	415, 450, 458, 687
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	3 cut(s)	197, 208, 530
Kzo9I	GATC	2 cut(s)	221, 567
LpnPI	CCDG	8 cut(s)	24, 58, 94, 264, 362, 403, 631, 656
Lsp1109I	GCAGC	2 cut(s)	50, 137
LweI	GCATC	3 cut(s)	94, 162, 500
MaeI	CTAG	3 cut(s)	219, 471, 595
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	2 cut(s)	392, 597
MalI	GATC	2 cut(s)	223, 569
MboI	GATC	2 cut(s)	221, 567
MboII	GAAGA	4 cut(s)	180, 276, 512, 769
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	2 cut(s)	221, 567
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	5 cut(s)	443, 465, 478, 589, 664
MlyI	GAGTC	3 cut(s)	206, 363, 542
MmeI	TCCRAC	1 cut(s)	189
MseI	TTAA	3 cut(s)	30, 103, 163
MslI	CAYNNNNRTG	1 cut(s)	496
MspI	CCGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	69, 591
NdeII	GATC	2 cut(s)	221, 567
NlaIII	CATG	3 cut(s)	197, 208, 530
NspI	RCATGY	1 cut(s)	208
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	267, 308, 454
PkrI	GCNGC	2 cut(s)	65, 152
PleI	GAGTC	3 cut(s)	206, 363, 541
PpsI	GAGTC	3 cut(s)	206, 363, 541
PscI	ACATGT	1 cut(s)	204
PspFI	CCCAGC	2 cut(s)	72, 670
PsuI	RGATCY	2 cut(s)	221, 567
RsaI	GTAC	3 cut(s)	45, 441, 708
RsaNI	GTAC	3 cut(s)	44, 440, 707
RseI	CAYNNNNRTG	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	30, 103, 163
SatI	GCNGC	2 cut(s)	64, 151
Sau3AI	GATC	2 cut(s)	221, 567
SchI	GAGTC	3 cut(s)	206, 363, 542
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	3 cut(s)	94, 162, 500
SfcI	CTRYAG	2 cut(s)	67, 397
SmiMI	CAYNNNNRTG	1 cut(s)	496
SmlI	CTYRAG	3 cut(s)	252, 296, 330
SmoI	CTYRAG	3 cut(s)	252, 296, 330
Sse9I	AATT	5 cut(s)	443, 465, 478, 589, 664
SspMI	CTAG	3 cut(s)	219, 471, 595
TaaI	ACNGT	4 cut(s)	4, 116, 230, 398
TaiI	ACGT	1 cut(s)	750
TasI	AATT	5 cut(s)	443, 465, 478, 589, 664
TatI	WGTACW	3 cut(s)	43, 439, 706
TfiI	GAWTC	3 cut(s)	267, 308, 454
Tru1I	TTAA	3 cut(s)	30, 103, 163
Tru9I	TTAA	3 cut(s)	30, 103, 163
TscAI	CASTG	2 cut(s)	140, 283
TseI	GCWGC	2 cut(s)	63, 150
TspDTI	ATGAA	4 cut(s)	182, 214, 277, 568
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	140, 283
VneI	GTGCAC	1 cut(s)	560
XapI	RAATTY	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	218
XceI	RCATGY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XspI	CTAG	3 cut(s)	219, 471, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.