Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Reverse (-)

11150754 .. 11154521

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCAACATGATCCCCAAAACTCCCAGTACAAAGACACAGCTGAAGCTGCTGTTGCCGGGGTGAGAAGCATTGCTGATTCTTGCATTCGATCGCAGACAGTTAAGCGACTCATCTACACTGCAAGCATACTTTCTATGTCGCCAAGAAAGGATGATGGAGTTGGATTCAGACCCTTACTTGATGAGTCATGTTGGACACCACTTGATGCCTCATCTACTTATGGCAATGCTATCACGATGGGGTACATTAAATCAAAGACCTTAGCTGAGAAAGCAGTGCTGAGCCACAATGACTATGATGATAGTAAATTAGAAGTGGTAACTCTTCCTTGTGGCTTAGTGGGAGGAGAAAGTCTTCTTTCATATTTGCCTACAAGTGTGGGAGTGATTCTGGCACAACTTACTGGGGACTTGTTTTCTTGCAATGCCTTAAAATTAATGCAAGAATTTATGGGATCAGTTCCTCTGGTGCACATTGATGATGTTTGCCAAGCACATATCTTCTGCATGGAACAGCCATCAATGAAAGGCAGATTCTGTTGTGCAGTTGCCTGTCACTCTATCAAAGAAATTGCAATATACTTCCAAGAAACTTACCCAGAATACAAGATACAAAAAGAATTGACCGAAGGGCCTGAAGAAGGAAGCCAAAGTGATTTCAGTAAGCTGAAGAAGATGGGCTTTGAGTATAAGTATGGCATGAAGGACATACTAGATGACAGTGTAGCATGGGCAAAGAAGTTAAATGGGAGCTCTCTTTCTCAAGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

257

Amino Acids

28.3

Weight (kDa)

5.29

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	5, 463
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	3 cut(s)	63, 657, 689
AfaI	GTAC	2 cut(s)	29, 245
AfiI	CCNNNNNNNGG	1 cut(s)	641
AluBI	AGCT	5 cut(s)	41, 47, 266, 667, 753
AluI	AGCT	5 cut(s)	41, 47, 266, 667, 753
Alw21I	GWGCWC	2 cut(s)	474, 755
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	5, 463
AlwNI	CAGNNNCTG	1 cut(s)	537
AoxI	GGCC	1 cut(s)	632
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	446
AseI	ATTAAT	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	632
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	474, 755
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	4 cut(s)	149, 232, 526, 670
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	713
BisI	GCNGC	1 cut(s)	48
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	632
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	2 cut(s)	19, 414
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	2 cut(s)	19, 414
BpiI	GAAGAC	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	25, 409
Bse3DI	GCAATG	3 cut(s)	69, 232, 430
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMI	GCAATG	3 cut(s)	69, 232, 430
BseMII	CTCAG	2 cut(s)	258, 272
BseNI	ACTGG	2 cut(s)	25, 409
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	564
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	634
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	474, 755
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	634
Bsp1286I	GDGCHC	2 cut(s)	474, 755
Bsp143I	GATC	3 cut(s)	10, 89, 455
Bsp1720I	GCTNAGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	2 cut(s)	259, 273
BspPI	GGATC	2 cut(s)	5, 463
BsrDI	GCAATG	3 cut(s)	69, 232, 430
BsrI	ACTGG	2 cut(s)	25, 409
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	10, 89, 455
Bst4CI	ACNGT	2 cut(s)	100, 722
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	262, 267, 281, 337
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	13, 92, 458
BstMBI	GATC	3 cut(s)	10, 89, 455
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 53, 272
BstSCI	CCNGG	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	2 cut(s)	117, 282
BtsIMutI	CAGTG	3 cut(s)	117, 282, 727
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	28, 244
CviAII	CATG	5 cut(s)	8, 189, 508, 700, 729
CviQI	GTAC	2 cut(s)	28, 244
DdeI	CTNAG	4 cut(s)	262, 267, 281, 337
DpnI	GATC	3 cut(s)	12, 91, 457
DpnII	GATC	3 cut(s)	10, 89, 455
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	755
Eco53kI	GAGCTC	1 cut(s)	753
Eco57I	CTGAAG	3 cut(s)	63, 657, 689
EcoICRI	GAGCTC	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	755
FaeI	CATG	5 cut(s)	11, 192, 511, 703, 732
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	5 cut(s)	7, 188, 507, 699, 728
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	5 cut(s)	11, 192, 511, 703, 732
HinfI	GANTC	6 cut(s)	77, 108, 165, 185, 388, 534
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	3 cut(s)	623, 635, 697
HpyCH4III	ACNGT	2 cut(s)	100, 722
HpyCH4V	TGCA	9 cut(s)	4, 84, 122, 423, 442, 472, 507, 545, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 53, 272
HpyF3I	CTNAG	4 cut(s)	262, 267, 281, 337
Hsp92II	CATG	5 cut(s)	11, 192, 511, 703, 732
Kzo9I	GATC	3 cut(s)	10, 89, 455
LmnI	GCTCC	1 cut(s)	750
LpnPI	CCDG	8 cut(s)	38, 70, 377, 390, 452, 565, 612, 648
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	2 cut(s)	319, 554
MalI	GATC	3 cut(s)	12, 91, 457
MboI	GATC	3 cut(s)	10, 89, 455
MboII	GAAGA	6 cut(s)	317, 347, 493, 650, 682, 685
MhlI	GDGCHC	2 cut(s)	474, 755
MluCI	AATT	5 cut(s)	308, 434, 446, 570, 620
MlyI	GAGTC	2 cut(s)	102, 194
MmeI	TCCRAC	2 cut(s)	142, 173
MnlI	CCTC	3 cut(s)	220, 338, 474
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	6 cut(s)	102, 249, 431, 437, 743, 772
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	47, 53, 272
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	10, 89, 455
NlaIII	CATG	5 cut(s)	11, 192, 511, 703, 732
NmuCI	GTSAC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	77, 165, 388, 534
PkrI	GCNGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	92
PleI	GAGTC	2 cut(s)	102, 193
PpsI	GAGTC	2 cut(s)	102, 193
PshBI	ATTAAT	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	755
PspPI	GGNCC	1 cut(s)	632
PstNI	CAGNNNCTG	1 cut(s)	537
PvuI	CGATCG	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	29, 245
RsaNI	GTAC	2 cut(s)	28, 244
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	755
SaqAI	TTAA	6 cut(s)	102, 249, 431, 437, 743, 772
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	3 cut(s)	10, 89, 455
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	102, 194
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	2 cut(s)	474, 755
SetI	ASST	6 cut(s)	43, 49, 263, 268, 669, 755
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	5 cut(s)	308, 434, 446, 570, 620
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	100, 722
TaqI	TCGA	1 cut(s)	88
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	5 cut(s)	308, 434, 446, 570, 620
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	77, 165, 388, 534
Tru1I	TTAA	6 cut(s)	102, 249, 431, 437, 743, 772
Tru9I	TTAA	6 cut(s)	102, 249, 431, 437, 743, 772
TscAI	CASTG	3 cut(s)	124, 282, 727
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	351, 539, 716
TspRI	CASTG	3 cut(s)	124, 282, 727
VneI	GTGCAC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.