Rh1AG281000

Anthocyanidin reductase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
51013171 .. 51017857
4687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG281000.1

Sequence Viewer

Length: 432 bp
ATGGACGAGTCTTGTTGGACTCCCTTCAATCTTTCATTTCCTCATGCCAATGAGGGATTGATGGCATATACACACACAAAGACCTTTTCGGAGAAAGAATTGTTGGAGCATAATGAGAATAGTGTTCTTGAGCTTGATGTAGTCAGCATTGCTTGTGGTCTTCTGGGAGGGGACACCCTTCTCCCTAGTATGCCTGAGAGCATGGGAGTGCTCATCTCACAGGTCACAAACAATAAGGGGACGTATCATGTTCTGAGATTTTTGGAGGAATTGCTGGGTAAAGTTCCAATTGTGCATATTGAAGATGTCAGTGAGGCACACATTTTGTGCATGGAGAAGCCCCTCGATCACTGGCAGATTTCTATGTGCTACTACATATATGTCATCCGCAGAAATTGCTTCTCACTGGAAAAAACATTATCCGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.22

Weight (kDa)

4.99

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 1 cut(s) 388
AgsI TTSAA 2 cut(s) 28, 302
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 213
BccI CCATC 1 cut(s) 55
BfaI CTAG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 356, 411
Bse3DI GCAATG 1 cut(s) 147
BseAI TCCGGA 1 cut(s) 422
BseGI GGATG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 186, 245
BseNI ACTGG 2 cut(s) 356, 411
BseYI CCCAGC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 2 cut(s) 185, 253
BsmFI GGGAC 2 cut(s) 185, 253
Bsp1286I GDGCHC 1 cut(s) 213
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 187, 246
BspEI TCCGGA 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 2 cut(s) 356, 411
BssMI GATC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 195, 254
BstF5I GGATG 1 cut(s) 384
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstV2I GAAGAC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 3 cut(s) 316, 349, 404
CviAII CATG 4 cut(s) 44, 202, 248, 331
CviJI RGCY 2 cut(s) 133, 340
CviKI_1 RGCY 2 cut(s) 133, 340
DdeI CTNAG 2 cut(s) 195, 254
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
FaeI CATG 4 cut(s) 47, 205, 251, 334
FaqI GGGAC 2 cut(s) 185, 253
FatI CATG 4 cut(s) 43, 201, 247, 330
FokI GGATG 1 cut(s) 371
FspBI CTAG 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 278
HapII CCGG 1 cut(s) 423
Hin1II CATG 4 cut(s) 47, 205, 251, 334
HinfI GANTC 2 cut(s) 8, 19
HpaII CCGG 1 cut(s) 423
Hpy188I TCNGA 2 cut(s) 91, 255
Hpy188III TCNNGA 2 cut(s) 128, 423
HpyAV CCTTC 2 cut(s) 34, 188
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 295, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 2 cut(s) 195, 254
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 4 cut(s) 47, 205, 251, 334
Kpn2I TCCGGA 1 cut(s) 422
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 6 cut(s) 149, 206, 207, 260, 337, 392
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 152, 314
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 5 cut(s) 98, 269, 288, 394, 427
MlyI GAGTC 2 cut(s) 13, 17
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 6 cut(s) 46, 51, 161, 259, 307, 353
MroI TCCGGA 1 cut(s) 422
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 2 cut(s) 48, 206
MspI CCGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 396
NdeII GATC 1 cut(s) 346
NlaIII CATG 4 cut(s) 47, 205, 251, 334
NmuCI GTSAC 1 cut(s) 223
PleI GAGTC 2 cut(s) 13, 16
PpsI GAGTC 2 cut(s) 13, 16
PspFI CCCAGC 1 cut(s) 274
RseI CAYNNNNRTG 2 cut(s) 48, 206
SaqAI TTAA 1 cut(s) 430
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 2 cut(s) 13, 17
SduI GDGCHC 1 cut(s) 213
SetI ASST 4 cut(s) 86, 135, 225, 245
SmiMI CAYNNNNRTG 2 cut(s) 48, 206
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 98, 269, 288, 394, 427
SsiI CCGC 1 cut(s) 388
SspMI CTAG 1 cut(s) 186
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 345
TasI AATT 5 cut(s) 98, 269, 288, 394, 427
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 3 cut(s) 316, 356, 411
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 3 cut(s) 316, 356, 411
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.