Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007214.1

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

7469 .. 8774

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007214.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgttgagtgaccttatgagggactatgaagattcaaagacactggcagagaaagaaatcttgagctatgtgtatcgcaacaaaagaagtggacttgagattgtgagcttggcctgtggtcttgtgggaggggactcacttccatcattcacgcctgtaactgtagcttgtttagtttctcagcttacaaatagtgcaaatgaatacaattgtctgagattcttagaggaattgctagggaaaattccaatagtccatattgatgatgtttgtgatgctcatatcttctgcatggtgagtccttcaataaatggtaggtttctgtgcacaagatcctatgtttcatctgcacaaattgctagttactatcagcaacattatccagaacttgaagtgaagcaagagtgtttggatttaccaaagaggcaaattggctggggttctaccaagcttagtgaggagggatttgtgtacaaatctgatacgaagatgatattggatgattgcataacggctgcaagaagatggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

3Beta_HSD Epimerase

Protein Analysis

177

Amino Acids

19.94

Weight (kDa)

5.22

Isoelectric Point (pI)

73.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	36, 306, 392
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	5 cut(s)	66, 108, 167, 184, 451
AluI	AGCT	5 cut(s)	66, 108, 167, 184, 451
Alw21I	GWGCWC	1 cut(s)	329
Alw44I	GTGCAC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	151, 519
BceAI	ACGGC	1 cut(s)	528
BfaI	CTAG	2 cut(s)	236, 360
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	2 cut(s)	82, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	194, 206
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	35, 146
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	35, 146
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	193, 207
BspPI	GGATC	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	471
BstDEI	CTNAG	4 cut(s)	180, 215, 223, 452
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	8 cut(s)	66, 108, 113, 167, 184, 435, 451, 515
CviKI_1	RGCY	8 cut(s)	66, 108, 113, 167, 184, 435, 451, 515
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	4 cut(s)	180, 215, 223, 452
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
FaeI	CATG	1 cut(s)	295
FaiI	YATR	8 cut(s)	17, 27, 69, 258, 282, 293, 339, 509
FaqI	GGGAC	2 cut(s)	35, 146
FatI	CATG	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	236, 360
GluI	GCNGC	1 cut(s)	516
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	4 cut(s)	32, 134, 219, 298
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	92, 327, 472
Hpy188I	TCNGA	2 cut(s)	216, 481
Hpy188III	TCNNGA	2 cut(s)	61, 383
Hpy8I	GTNNAC	3 cut(s)	92, 327, 472
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	197, 291, 327, 350, 507, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	4 cut(s)	180, 215, 223, 452
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	332
LpnPI	CCDG	5 cut(s)	29, 127, 168, 396, 421
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	236, 360
MaeIII	GTNAC	3 cut(s)	8, 157, 362
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	4 cut(s)	41, 277, 499, 534
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	5 cut(s)	208, 230, 243, 354, 429
MlyI	GAGTC	2 cut(s)	128, 307
MnlI	CCTC	6 cut(s)	12, 122, 220, 417, 451, 454
MslI	CAYNNNNRTG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	32, 219
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	128, 306
PpsI	GAGTC	2 cut(s)	128, 306
PspFI	CCCAGC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	261
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	1 cut(s)	332
SchI	GAGTC	2 cut(s)	128, 307
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	7 cut(s)	15, 68, 110, 169, 186, 320, 453
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	61, 95
SmoI	CTYRAG	2 cut(s)	61, 95
Sse9I	AATT	5 cut(s)	208, 230, 243, 354, 429
SspMI	CTAG	2 cut(s)	236, 360
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	5 cut(s)	208, 230, 243, 354, 429
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	32, 219
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	42, 216, 333
TspRI	CASTG	1 cut(s)	48
VneI	GTGCAC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	243
XspI	CTAG	2 cut(s)	236, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.