Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

11440452 .. 11442691

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGAACACAAGGGTTTGCGTTACTGGAGGCTCAAGCTACCTCGGCTCTTCACTTATCAAAAGGCTCTTAGAGAAAGGATACACCGTCCATGCAACCCTAAGAAATCTGGGTGATCCATTTAAAGTGGGACTTCTCAAGGGTCTTCCTACTCTTGGTGCAGACAACAGACTGAAATTGTTTCAAGCAGATATATATAATCCTGATGAGTTTGAGACAGCAATTCAAGGGTGCAACTATATTTTTCACTTGGCCACCCCATTGCAGCACGAGCCCAAGGATACTCAGTTCAAAGACACTTCTGAAGCTGCAGTTTCGGGAATTAAGAGCATAGTGAGGTCTTGTATCAAATCAGGCACCATAAAGCGGCTCATTTACACAGCCTCTGTGGTGGCCGCATCACCAATCAAGGACTCTGGAAATGGCTTCAAACAGTTTATGGATGAGTCCTGTTGGACTCCCCTCAATCTTTCATTTGGCCTTGCCAATAAAGTATTGATTGATTATACACACTCAAAGAGCCTTTCAGAGAAAGAAGTGTTGAAGCACGCTAGTGGTGACCTTGAAGTAGTCAGCATTGCCTGTGGCCTTGTGGGAGGGGACACACTTCTCACTGCTATGCCTGAGAGCATGGGAGTGCTCATTTCACAAATCACAAAAGATAGTAGGAGATACCAAACCCTGAGATTTTTGGAGGAATTGCTTGGTAAAGTTCCAATTGTGCACATTGAAGATGTTTGTGAGGCACACATACTATGCATGGAGAAGCCTTCCATCAATGGCAGATTTCTATGTGCCAGTGCATATTTGTCTTCAGCAGAAATAGCATCTCACTGGGAAAAAAATTACCCAGGTCTCAGAATAGCTGAAGAGTTTGTGGAGGATTCAGGGAGAGACATTGGCTGGGGTTCCACAAAGCTGAAGAAAATTGGATTTGAGTACAAATTTGATGCCAAGGTGATATTAGATGACACTTTAAAGTGGGCCCAAAAGATGGGTGAGTTTGCTTCCAGCCAAAATACTGTTGTACCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

346

Amino Acids

38.01

Weight (kDa)

6.72

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	994
AciI	CCGC	2 cut(s)	367, 396
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	2 cut(s)	252, 393
AcsI	RAATTY	1 cut(s)	944
AcuI	CTGAAG	4 cut(s)	324, 798, 888, 941
AfaI	GTAC	2 cut(s)	941, 1029
AfiI	CCNNNNNNNGG	3 cut(s)	155, 366, 994
AgsI	TTSAA	7 cut(s)	185, 227, 292, 430, 544, 566, 731
AjnI	CCWGG	1 cut(s)	850
AleI	CACNNNNGTG	1 cut(s)	552
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	39, 308, 866, 919
AluI	AGCT	4 cut(s)	39, 308, 866, 919
Alw21I	GWGCWC	2 cut(s)	642, 726
Alw26I	GTCTC	3 cut(s)	209, 860, 888
Alw44I	GTGCAC	1 cut(s)	722
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	5 cut(s)	252, 393, 478, 586, 984
ApaI	GGGCCC	1 cut(s)	988
ApaLI	GTGCAC	1 cut(s)	722
ApeKI	GCWGC	2 cut(s)	265, 308
ApoI	RAATTY	1 cut(s)	944
AspS9I	GGNCC	2 cut(s)	984, 985
AsuHPI	GGTGA	5 cut(s)	125, 393, 569, 970, 1010
BaeGI	GKGCMC	2 cut(s)	726, 988
BaeI	ACNNNNGTAYC	1 cut(s)	1011
BalI	TGGCCA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	2 cut(s)	276, 988
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	137, 804
Bbv12I	GWGCWC	2 cut(s)	642, 726
BbvI	GCAGC	2 cut(s)	277, 295
BccI	CCATC	2 cut(s)	782, 988
BciT130I	CCWGG	1 cut(s)	852
BciVI	GTATCC	2 cut(s)	74, 274
BcoDI	GTCTC	3 cut(s)	209, 860, 888
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	309
BfuI	GTATCC	2 cut(s)	74, 274
BisI	GCNGC	4 cut(s)	266, 309, 368, 396
BlsI	GCNGC	4 cut(s)	267, 310, 369, 397
Bme1390I	CCNGG	1 cut(s)	852
BmgT120I	GGNCC	2 cut(s)	984, 985
BmiI	GGNNCC	3 cut(s)	358, 910, 986
BmrFI	CCNGG	1 cut(s)	852
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	3 cut(s)	407, 836, 940
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	2 cut(s)	137, 804
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	19, 122
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	4 cut(s)	43, 276, 850, 954
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 366, 994
Bse1I	ACTGG	3 cut(s)	31, 798, 839
Bse3DI	GCAATG	2 cut(s)	260, 576
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	4 cut(s)	43, 276, 850, 954
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	3 cut(s)	155, 366, 994
BseMI	GCAATG	2 cut(s)	260, 576
BseMII	CTCAG	4 cut(s)	299, 615, 674, 871
BseNI	ACTGG	3 cut(s)	31, 798, 839
BseSI	GKGCMC	2 cut(s)	726, 988
BseXI	GCAGC	2 cut(s)	277, 295
BseYI	CCCAGC	1 cut(s)	903
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	5 cut(s)	254, 395, 480, 588, 986
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	642, 726
BslFI	GGGAC	2 cut(s)	144, 614
BslI	CCNNNNNNNGG	3 cut(s)	155, 366, 994
BsmAI	GTCTC	3 cut(s)	209, 860, 888
BsmFI	GGGAC	2 cut(s)	144, 614
BsnI	GGCC	5 cut(s)	254, 395, 480, 588, 986
Bso31I	GGTCTC	1 cut(s)	860
Bsp120I	GGGCCC	1 cut(s)	984
Bsp1286I	GDGCHC	4 cut(s)	276, 642, 726, 988
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	367, 396
BspANI	GGCC	5 cut(s)	254, 395, 480, 588, 986
BspCNI	CTCAG	4 cut(s)	298, 616, 675, 870
BspLI	GGNNCC	3 cut(s)	358, 910, 986
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	860
BsrDI	GCAATG	2 cut(s)	260, 576
BsrI	ACTGG	3 cut(s)	31, 798, 839
BssECI	CCNNGG	4 cut(s)	43, 276, 850, 954
BssMI	GATC	1 cut(s)	115
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	276, 954
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	3 cut(s)	88, 435, 1024
Bst6I	CTCTTC	2 cut(s)	55, 864
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	6 cut(s)	70, 101, 285, 624, 683, 857
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	3 cut(s)	209, 860, 888
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 271, 824
BstNI	CCWGG	1 cut(s)	852
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	850
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	2 cut(s)	726, 988
BstV1I	GCAGC	2 cut(s)	277, 295
BstV2I	GAAGAC	2 cut(s)	137, 804
BsuI	GTATCC	2 cut(s)	74, 274
BsuRI	GGCC	5 cut(s)	254, 395, 480, 588, 986
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	612, 805, 832
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	984, 985
Csp6I	GTAC	2 cut(s)	940, 1028
CviAII	CATG	3 cut(s)	92, 631, 760
CviQI	GTAC	2 cut(s)	940, 1028
DdeI	CTNAG	6 cut(s)	70, 101, 285, 624, 683, 857
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	2 cut(s)	124, 978
EaeI	YGGCCR	2 cut(s)	252, 393
Eam1104I	CTCTTC	2 cut(s)	55, 864
EarI	CTCTTC	2 cut(s)	55, 864
Eco130I	CCWWGG	2 cut(s)	276, 954
Eco24I	GRGCYC	2 cut(s)	276, 988
Eco31I	GGTCTC	1 cut(s)	860
Eco57I	CTGAAG	4 cut(s)	324, 798, 888, 941
Eco91I	GGTNACC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	2 cut(s)	276, 954
EcoT22I	ATGCAT	1 cut(s)	761
EcoT38I	GRGCYC	2 cut(s)	276, 988
ErhI	CCWWGG	2 cut(s)	276, 954
FaeI	CATG	3 cut(s)	95, 634, 763
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	2 cut(s)	144, 614
FatI	CATG	3 cut(s)	91, 630, 759
Fnu4HI	GCNGC	4 cut(s)	266, 309, 368, 396
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	276, 988
Fsp4HI	GCNGC	4 cut(s)	266, 309, 368, 396
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	4 cut(s)	266, 309, 368, 396
GsaI	CCCAGC	1 cut(s)	907
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	5 cut(s)	254, 395, 480, 588, 986
Hin1II	CATG	3 cut(s)	95, 634, 763
HinfI	GANTC	4 cut(s)	413, 446, 457, 884
HphI	GGTGA	5 cut(s)	125, 393, 569, 970, 1010
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	3 cut(s)	304, 529, 860
Hpy188III	TCNNGA	3 cut(s)	203, 318, 417
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	1 cut(s)	780
HpyCH4III	ACNGT	3 cut(s)	88, 435, 1024
HpyCH4V	TGCA	8 cut(s)	95, 161, 234, 265, 311, 724, 759, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 271, 824
HpyF3I	CTNAG	6 cut(s)	70, 101, 285, 624, 683, 857
Hsp92II	CATG	3 cut(s)	95, 634, 763
Kzo9I	GATC	1 cut(s)	115
LguI	GCTCTTC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	277, 295
LweI	GCATC	3 cut(s)	407, 836, 940
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	22, 557
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	6 cut(s)	42, 137, 743, 804, 881, 934
MfeI	CAATTG	1 cut(s)	717
MhlI	GDGCHC	4 cut(s)	276, 642, 726, 988
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	8 cut(s)	176, 222, 321, 698, 717, 844, 927, 944
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	3 cut(s)	407, 451, 455
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	9 cut(s)	23, 53, 330, 394, 473, 590, 688, 736, 874
Mox20I	TGGCCA	1 cut(s)	254
Mph1103I	ATGCAT	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	3 cut(s)	123, 324, 977
MslI	CAYNNNNRTG	3 cut(s)	552, 617, 635
Msp20I	TGGCCA	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	852
MunI	CAATTG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	3 cut(s)	45, 271, 824
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	95, 634, 763
NlaIV	GGNNCC	3 cut(s)	358, 910, 986
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	761
OliI	CACNNNNGTG	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	994
PkrI	GCNGC	4 cut(s)	267, 310, 369, 397
PleI	GAGTC	3 cut(s)	407, 451, 454
PpsI	GAGTC	3 cut(s)	407, 451, 454
Psp6I	CCWGG	1 cut(s)	850
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	3 cut(s)	358, 910, 986
PspOMI	GGGCCC	1 cut(s)	984
PspPI	GGNCC	2 cut(s)	984, 985
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	941, 1029
RsaNI	GTAC	2 cut(s)	940, 1028
RseI	CAYNNNNRTG	3 cut(s)	552, 617, 635
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	123, 324, 977
SatI	GCNGC	4 cut(s)	266, 309, 368, 396
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	2 cut(s)	984, 985
SchI	GAGTC	3 cut(s)	407, 451, 455
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	4 cut(s)	276, 642, 726, 988
SetI	ASST	9 cut(s)	41, 45, 310, 341, 564, 856, 868, 921, 960
SfaNI	GCATC	3 cut(s)	407, 836, 940
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	3 cut(s)	552, 617, 635
SmlI	CTYRAG	2 cut(s)	34, 137
SmoI	CTYRAG	2 cut(s)	34, 137
Sse9I	AATT	8 cut(s)	176, 222, 321, 698, 717, 844, 927, 944
SsiI	CCGC	2 cut(s)	367, 396
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	2 cut(s)	276, 954
TaaI	ACNGT	3 cut(s)	88, 435, 1024
TasI	AATT	8 cut(s)	176, 222, 321, 698, 717, 844, 927, 944
TatI	WGTACW	1 cut(s)	939
TauI	GCSGC	2 cut(s)	370, 398
TfiI	GAWTC	1 cut(s)	884
Tru1I	TTAA	3 cut(s)	123, 324, 977
Tru9I	TTAA	3 cut(s)	123, 324, 977
TscAI	CASTG	3 cut(s)	619, 805, 839
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	265, 308
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	1 cut(s)	462
TspRI	CASTG	3 cut(s)	619, 805, 839
Van91I	CCANNNNNTGG	1 cut(s)	994
VneI	GTGCAC	1 cut(s)	722
XapI	RAATTY	1 cut(s)	944
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.