Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Reverse (-)

1617784 .. 1618529

Gene Structure 746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAATCTCTTACTCACATGACTTGTGGATTGAAACTGGACCTCTCATCTAATGGATGGTACAAGTACCTGACGAAATTGCTGAAAAACATCGCAGGAGTCTCTTATCAGATAGATGCACAAGCAGGTATGGCATATATTTCCGGGAAAGTAAACGCGAAAAAGTTACTGGAGAGGATTGTCAAGGCTGGGGAAAAAGATGCTGCAGTTTGCTGGGTGAGGACCGGAGAGGAATATACAACTCCTTGTTATGGCAATGGGTATTATAATGACCAACAAAGACTATTATCATGTGATCCTTATAATAACTATAATTATATGGGATCATATGCTCCTACTACTCCTCCTCCTCTTCCTCCTAGTTACTACCCATCTTACGGTCACCATAATCCAATGACCCATTACTATCCCCAGTTACCTCCTCCTTATACATCTTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

147

Amino Acids

16.71

Weight (kDa)

8.24

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 303
Acc36I	ACCTGC	1 cut(s)	116
AccII	CGCG	1 cut(s)	158
AclWI	GGATC	2 cut(s)	290, 331
AfaI	GTAC	2 cut(s)	62, 68
AfiI	CCNNNNNNNGG	2 cut(s)	251, 377
AgsI	TTSAA	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	290, 331
ApeKI	GCWGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	40, 222
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	229, 374
AvaII	GGWCC	2 cut(s)	40, 222
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	51, 379
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	2 cut(s)	40, 222
BmgT120I	GGNCC	2 cut(s)	40, 222
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	106, 190
BmuI	ACTGGG	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	4 cut(s)	328, 331, 358, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 377
Bse1I	ACTGG	3 cut(s)	42, 174, 412
Bse3DI	GCAATG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	251, 377
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	3 cut(s)	42, 174, 412
BseRI	GAGGAG	4 cut(s)	333, 336, 339, 411
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	2 cut(s)	188, 213
Bsh1236I	CGCG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	144, 225
BslI	CCNNNNNNNGG	2 cut(s)	251, 377
BsmAI	GTCTC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	295, 323
BspFNI	CGCG	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	290, 331
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	42, 174, 412
BssMI	GATC	2 cut(s)	295, 323
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	298, 326
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	295, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	40, 222
Csp6I	GTAC	2 cut(s)	61, 67
CviAII	CATG	2 cut(s)	19, 291
CviJI	RGCY	1 cut(s)	188
CviKI_1	RGCY	1 cut(s)	188
CviQI	GTAC	2 cut(s)	61, 67
DpnI	GATC	2 cut(s)	297, 325
DpnII	GATC	2 cut(s)	295, 323
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco47I	GGWCC	2 cut(s)	40, 222
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
FaeI	CATG	2 cut(s)	22, 294
FatI	CATG	2 cut(s)	18, 290
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	2 cut(s)	192, 217
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	2 cut(s)	144, 225
Hin1II	CATG	2 cut(s)	22, 294
HinfI	GANTC	2 cut(s)	5, 99
HpaII	CCGG	2 cut(s)	144, 225
HphI	GGTGA	2 cut(s)	229, 374
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	111
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	2 cut(s)	119, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	22, 294
Kzo9I	GATC	2 cut(s)	295, 323
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	106, 190
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	4 cut(s)	165, 362, 380, 414
MalI	GATC	2 cut(s)	297, 325
MboI	GATC	2 cut(s)	295, 323
MboII	GAAGA	1 cut(s)	344
MluCI	AATT	2 cut(s)	77, 313
MlyI	GAGTC	1 cut(s)	108
MspI	CCGG	2 cut(s)	144, 225
MspR9I	CCNGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	2 cut(s)	295, 323
NlaIII	CATG	2 cut(s)	22, 294
NmuCI	GTSAC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PsiI	TTATAA	2 cut(s)	267, 303
PspEI	GGTNACC	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	188, 213
PspPI	GGNCC	2 cut(s)	40, 222
PstI	CTGCAG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	62, 68
RsaNI	GTAC	2 cut(s)	61, 67
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	295, 323
Sau96I	GGNCC	2 cut(s)	40, 222
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	4 cut(s)	45, 72, 130, 421
SfaNI	GCATC	2 cut(s)	106, 190
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	2 cut(s)	40, 222
Sse9I	AATT	2 cut(s)	77, 313
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	380
TasI	AATT	2 cut(s)	77, 313
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	40, 222
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.