Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007680.1

Orthogroup ID

OG0001687

Physical Location & Seq

Genomic Coordinates Forward (+)

26128 .. 27757

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007680.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggctggaacacggaactgcaggggcagtatgcttgtggtaaggctgtgtggttgcaaggacaatgtgcaaggcagcgagggctgctgtgaggctgcaggggcagcaatacagagctgcaagcgcacgggagcgcaggctgcagcgaaggagcacagggacacaggtcgaattcaccatctacatattggcggagacgcatcagatattggagaaatcagtggagaactaccagaaagaagtaaattgaagaaaaagaagagaaggaacatgatgaaaggttgcgataagatctggaggagttggaggcagatgttcaattctgtcgtgaaagaattgttggggcataatgagaatagtgttcttgagcttgatgtagtcagcattgcttgtggtcttgtgggaggggactcccttctccctagtatgcctgagagcatgggagtgctcatctcacaggtcacaaacaataaggggacgtatcatgttctgagatttttggaggaattgctgggtaaagttccaattgtgcatattgaagatgtcagtgaggcacacattttgtgcatggagaagcccctcaatcactggcagatttctattttctactacatatatgtcatccgcagaaattgcttctcactggcagggccggccctgagggctgccacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

224

Amino Acids

24.7

Weight (kDa)

8.81

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04220 FvH4_5g04220 FvH4_5g04260 FvH4_5g33950 FvH4_7g16111 FvH4_7g16111 FvH4_7g16111 FvH4_7g16130
malus_domestica	MD01G1077400.v1.1 MD01G1077800.v1.1 MD01G1077900.v1.1 MD06G1103800.v1.1 MD06G1103900.v1.1
prunus_persica	Prupe.2G184900_v2.0.a1 Prupe.2G185000_v2.0.a1 Prupe.5G116400_v2.0.a1 Prupe.5G116600_v2.0.a1
pyrus_communis	pycom01g10650 pycom06g09850 pycom07g14620
rosa_chinensis	RchiOBHm_Chr1g0359081 RchiOBHm_Chr7g0195261
rosa_laevigata	RLG00000004136 RLG00000027901 RLG00000027902
rosa_multiflora	Rmu_sc0002381.1_g000008 Rmu_sc0007214.1_g000002 Rmu_sc0007680.1_g000001 Rmu_sc0007680.1_g000010
rosa_roxburghii	Rroxscaffold_4G00297370 Rroxscaffold_4G00297390
rosa_rugosa	Rorug01G0267600 Rorug07G0021900 Rorug07G0022000 Rorug07G0022100
rosa_samantha	Rh1AG281000 Rh1BG248100 Rh1CG265700 Rh1DG276500 Rh2AG004700 Rh7AG149200 Rh7BG150300 Rh7BG150400 Rh7CG154000 Rh7DG150400
rosa_wichuraiana	Rw0G020520 Rw1G025010 Rw6G011300 Rw7G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	192, 625
AcsI	RAATTY	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	250, 319, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	2 cut(s)	117, 370
AluI	AGCT	2 cut(s)	117, 370
Alw21I	GWGCWC	2 cut(s)	156, 450
Alw26I	GTCTC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	650, 654
ApeKI	GCWGC	8 cut(s)	75, 84, 95, 104, 117, 140, 143, 665
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	2 cut(s)	126, 136
AspS9I	GGNCC	2 cut(s)	650, 655
AsuHPI	GGTGA	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	659
Bbv12I	GWGCWC	2 cut(s)	156, 450
BbvI	GCAGC	8 cut(s)	71, 82, 87, 104, 116, 127, 155, 652
BccI	CCATC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	3 cut(s)	19, 96, 141
BglI	GCCNNNNNGGC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	8 cut(s)	76, 85, 96, 105, 118, 141, 144, 666
BlsI	GCNGC	8 cut(s)	77, 86, 97, 106, 119, 142, 145, 667
BmgT120I	GGNCC	2 cut(s)	650, 655
BmsI	GCATC	1 cut(s)	209
BoxI	GACNNNNGTC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	593, 648
Bse21I	CCTNAGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	621
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	423, 482, 650
BseNI	ACTGG	2 cut(s)	593, 648
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	8 cut(s)	71, 82, 87, 104, 116, 127, 155, 652
BseYI	CCCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	652, 656
BsiHKAI	GWGCWC	2 cut(s)	156, 450
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	3 cut(s)	173, 422, 490
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	3 cut(s)	173, 422, 490
BsnI	GGCC	2 cut(s)	652, 656
Bsp1286I	GDGCHC	2 cut(s)	156, 450
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	2 cut(s)	192, 625
BspANI	GGCC	2 cut(s)	652, 656
BspCNI	CTCAG	3 cut(s)	424, 483, 651
BspMAI	CTGCAG	3 cut(s)	23, 100, 145
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	593, 648
BssAI	RCCGGY	1 cut(s)	652
BssMI	GATC	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstC8I	GCNNGC	3 cut(s)	122, 138, 654
BstDEI	CTNAG	3 cut(s)	432, 491, 659
BstF5I	GGATG	1 cut(s)	621
BstHHI	GCGC	2 cut(s)	126, 136
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	9 cut(s)	81, 84, 101, 104, 123, 140, 633, 653, 662
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSFI	CTRYAG	3 cut(s)	19, 96, 141
BstV1I	GCAGC	8 cut(s)	71, 82, 87, 104, 116, 127, 155, 652
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	652, 656
BtsCI	GGATG	1 cut(s)	621
BtsIMutI	CAGTG	4 cut(s)	226, 553, 586, 641
Cac8I	GCNNGC	3 cut(s)	122, 138, 654
CfoI	GCGC	2 cut(s)	126, 136
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	650, 655
CseI	GACGC	1 cut(s)	206
CviAII	CATG	4 cut(s)	271, 439, 485, 568
DdeI	CTNAG	3 cut(s)	432, 491, 659
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	274, 442, 488, 571
FaqI	GGGAC	3 cut(s)	173, 422, 490
FatI	CATG	4 cut(s)	270, 438, 484, 567
Fnu4HI	GCNGC	8 cut(s)	76, 85, 96, 105, 118, 141, 144, 666
FokI	GGATG	1 cut(s)	608
FseI	GGCCGGCC	1 cut(s)	656
Fsp4HI	GCNGC	8 cut(s)	76, 85, 96, 105, 118, 141, 144, 666
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	125, 135
GluI	GCNGC	8 cut(s)	76, 85, 96, 105, 118, 141, 144, 666
GsaI	CCCAGC	1 cut(s)	515
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	652, 656
HapII	CCGG	1 cut(s)	653
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	126, 136
Hin1II	CATG	4 cut(s)	274, 442, 488, 571
Hin6I	GCGC	2 cut(s)	124, 134
HinP1I	GCGC	2 cut(s)	124, 134
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	205, 492
Hpy188III	TCNNGA	3 cut(s)	295, 328, 365
HpyAV	CCTTC	3 cut(s)	142, 258, 425
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	8 cut(s)	21, 57, 70, 98, 120, 143, 532, 567
HpyF10VI	GCNNNNNNNGC	9 cut(s)	81, 84, 101, 104, 123, 140, 633, 653, 662
HpyF3I	CTNAG	3 cut(s)	432, 491, 659
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	274, 442, 488, 571
HspAI	GCGC	2 cut(s)	124, 134
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	131, 151
Lsp1109I	GCAGC	8 cut(s)	71, 82, 87, 104, 116, 127, 155, 652
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	262, 271, 551
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	2 cut(s)	156, 450
MluCI	AATT	7 cut(s)	171, 245, 319, 335, 506, 525, 631
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	9 cut(s)	73, 85, 291, 300, 398, 496, 544, 590, 654
MroNI	GCCGGC	1 cut(s)	652
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	525
MwoI	GCNNNNNNNGC	9 cut(s)	81, 84, 101, 104, 123, 140, 633, 653, 662
NaeI	GCCGGC	1 cut(s)	654
NdeII	GATC	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	652
NlaIII	CATG	4 cut(s)	274, 442, 488, 571
NmuCI	GTSAC	1 cut(s)	460
PdiI	GCCGGC	1 cut(s)	654
PkrI	GCNGC	8 cut(s)	77, 86, 97, 106, 119, 142, 145, 667
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PshAI	GACNNNNGTC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	650, 655
PstI	CTGCAG	3 cut(s)	23, 100, 145
PsuI	RGATCY	1 cut(s)	291
RigI	GGCCGGCC	1 cut(s)	656
RseI	CAYNNNNRTG	1 cut(s)	443
SatI	GCNGC	8 cut(s)	76, 85, 96, 105, 118, 141, 144, 666
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	650, 655
SchI	GAGTC	1 cut(s)	404
SduI	GDGCHC	2 cut(s)	156, 450
SetI	ASST	7 cut(s)	119, 169, 283, 372, 462, 482, 674
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	3 cut(s)	19, 96, 141
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	7 cut(s)	171, 245, 319, 335, 506, 525, 631
SsiI	CCGC	2 cut(s)	192, 625
SspMI	CTAG	1 cut(s)	423
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	169
TasI	AATT	7 cut(s)	171, 245, 319, 335, 506, 525, 631
TscAI	CASTG	4 cut(s)	226, 553, 593, 648
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	8 cut(s)	75, 84, 95, 104, 117, 140, 143, 665
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	4 cut(s)	226, 553, 593, 648
XapI	RAATTY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.