Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

22479072 .. 22487356

Gene Structure 8285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACGTCAGTGACACCTGATTCTAGGAAAGTTGGGACGGGGATGGCAGCATTCCCATCTCCTTTTCTCACGCCTCGGCCAGAAAAGCGGCGTGGTACTCTTGATTGGAATTTGAATCACAAGGATAAGGATAAGGAAGTTAATGTGCAAGTTGTGCTCAAATGCAGGTTTGACATTTTCAAATACTTGTCAGAACTTTTACATGGAAGCCAATTTTGTTGGGATTGGAAAGGCTCAGAAAGATACAAGTCCAAATACACTTTCATGGTTCTTCTGCATGCTCAGCAAGAACCCTCTAATAAGGAGAAAGTTGCACAAGAAGTGAGGGATGTTGTTGGTATAAATCATGAAGCTAACAATGATGAATTTGTGGCAGATATAACTGATGCAGCTCTCGAACAAATGCATCATCTTCACTCTACTCTAACTGAGACTTTGAGGCTATATCCTGCAGTTCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.76

Weight (kDa)

6.65

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	156
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	109, 365
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	115, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	353, 392
AluI	AGCT	2 cut(s)	353, 392
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	47, 389
ApoI	RAATTY	2 cut(s)	109, 365
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	59, 401
BccI	CCATC	2 cut(s)	37, 64
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	3 cut(s)	48, 89, 390
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	3 cut(s)	49, 90, 391
BmsI	GCATC	2 cut(s)	376, 415
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	48, 334
BseMII	CTCAG	3 cut(s)	249, 296, 420
BseXI	GCAGC	2 cut(s)	59, 401
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	248, 295, 421
BspHI	TCATGA	1 cut(s)	346
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	235, 282, 429
BstF5I	GGATG	2 cut(s)	48, 334
BstMAI	GTCTC	1 cut(s)	425
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 154, 283
BstNSI	RCATGY	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	59, 401
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	48, 334
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	4 cut(s)	203, 265, 278, 347
CviJI	RGCY	6 cut(s)	79, 210, 234, 353, 392, 442
CviKI_1	RGCY	6 cut(s)	79, 210, 234, 353, 392, 442
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	3 cut(s)	235, 282, 429
EaeI	YGGCCR	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	408
FaeI	CATG	4 cut(s)	206, 268, 281, 350
FaiI	YATR	7 cut(s)	204, 266, 279, 341, 348, 380, 445
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	4 cut(s)	202, 264, 277, 346
Fnu4HI	GCNGC	3 cut(s)	48, 89, 390
FokI	GGATG	2 cut(s)	55, 341
Fsp4HI	GCNGC	3 cut(s)	48, 89, 390
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	3 cut(s)	48, 89, 390
HaeIII	GGCC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	206, 268, 281, 350
HinfI	GANTC	2 cut(s)	20, 115
Hpy188I	TCNGA	2 cut(s)	193, 238
Hpy188III	TCNNGA	3 cut(s)	101, 347, 395
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	148, 165, 277, 314, 389, 406, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 154, 283
HpyF3I	CTNAG	3 cut(s)	235, 282, 429
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	206, 268, 281, 350
LpnPI	CCDG	3 cut(s)	30, 93, 151
Lsp1109I	GCAGC	2 cut(s)	59, 401
LweI	GCATC	2 cut(s)	376, 415
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	263, 404
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	109, 212, 365
MnlI	CCTC	4 cut(s)	84, 304, 318, 432
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	85, 154, 283
NlaIII	CATG	4 cut(s)	206, 268, 281, 350
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	346
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	20, 115
PkrI	GCNGC	3 cut(s)	49, 90, 391
PstI	CTGCAG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	48, 89, 390
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	8, 19, 170, 355, 394
SfaNI	GCATC	2 cut(s)	376, 415
SfcI	CTRYAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	109, 212, 365
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	109, 212, 365
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	20, 115
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	47, 389
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	253, 363, 378
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	109, 365
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	1 cut(s)	24
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.