Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012031.1

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

8524 .. 9878

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012031.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgctcatagagttctctactctgaaaggtaccatcatgcctatcttctttaggttttgggaaggactgaaagatgacgtcagtgaagttgggacggggatggcagcattcccatctccttttctcacacctcggcccgaaaagaggcgtggtactcttgattggaattcaaatcacaaggataaggataaggaaagtctatcatatgaagtgttttcctatttcaaaacaaccattacttcttcctcaccagctcatccagaattcatatttctgcaacaaccaggctcagaaagatacaagtccaaatacactttcatggttcttctgcatgctctgcaagaaccctctaataaggacaaagttgcacaagaagtgagggatgtcgttggtataaatcatgaagctaacattgatgaatttgtggcagatataactgatgcagctctaaaacaaatgcatcatcttcacgctactctaattgagactttgaggcaatatcctgcagttcctctggtacgtatgtatgtatccttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

179

Amino Acids

20.54

Weight (kDa)

6.16

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AcsI	RAATTY	3 cut(s)	166, 263, 419
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	31, 154, 519
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	171, 226
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	3 cut(s)	254, 407, 446
AluI	AGCT	3 cut(s)	254, 407, 446
Alw26I	GTCTC	1 cut(s)	479
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	104, 443
ApoI	RAATTY	3 cut(s)	166, 263, 419
Asp718I	GGTACC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	240
BaeI	ACNNNNGTAYC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	116, 455
BccI	CCATC	3 cut(s)	41, 94, 121
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	2 cut(s)	105, 444
BlsI	GCNGC	2 cut(s)	106, 445
Bme1390I	CCNGG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	430, 469
BsaAI	YACGTR	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	3 cut(s)	105, 256, 388
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	116, 455
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	105, 256, 388
BstMAI	GTCTC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	504
BstSNI	TACGTA	1 cut(s)	521
BstV1I	GCAGC	2 cut(s)	116, 455
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	105, 256, 388
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	30, 153, 518
CviAII	CATG	4 cut(s)	37, 319, 332, 401
CviJI	RGCY	5 cut(s)	136, 254, 288, 407, 446
CviKI_1	RGCY	5 cut(s)	136, 254, 288, 407, 446
CviQI	GTAC	3 cut(s)	30, 153, 518
DdeI	CTNAG	1 cut(s)	289
Eco105I	TACGTA	1 cut(s)	521
EcoRI	GAATTC	2 cut(s)	166, 263
EcoRII	CCWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	462
FaeI	CATG	4 cut(s)	40, 322, 335, 404
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	4 cut(s)	36, 318, 331, 400
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	105, 444
FokI	GGATG	3 cut(s)	112, 243, 395
Fsp4HI	GCNGC	2 cut(s)	105, 444
GluI	GCNGC	2 cut(s)	105, 444
HaeIII	GGCC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	40, 322, 335, 404
HphI	GGTGA	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	24, 292
Hpy188III	TCNNGA	3 cut(s)	158, 260, 401
HpyAV	CCTTC	1 cut(s)	56
HpyCH4IV	ACGT	2 cut(s)	78, 520
HpyCH4V	TGCA	7 cut(s)	277, 331, 340, 368, 443, 460, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	2 cut(s)	78, 520
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	40, 322, 335, 404
KpnI	GGTACC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	264, 270, 273, 297, 500, 516
Lsp1109I	GCAGC	2 cut(s)	116, 455
LweI	GCATC	2 cut(s)	430, 469
MaeII	ACGT	2 cut(s)	78, 520
MboII	GAAGA	4 cut(s)	37, 234, 317, 458
MluCI	AATT	4 cut(s)	166, 263, 419, 480
MnlI	CCTC	7 cut(s)	138, 141, 256, 358, 372, 486, 522
Mph1103I	ATGCAT	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeI	CATATG	1 cut(s)	205
NlaIII	CATG	4 cut(s)	40, 322, 335, 404
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PagI	TCATGA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	106, 445
Ppu21I	YACGTR	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	31, 154, 519
RsaNI	GTAC	3 cut(s)	30, 153, 518
RseI	CAYNNNNRTG	1 cut(s)	317
SatI	GCNGC	2 cut(s)	105, 444
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	8 cut(s)	31, 56, 81, 133, 256, 409, 448, 523
SfaNI	GCATC	2 cut(s)	430, 469
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	317
SnaBI	TACGTA	1 cut(s)	521
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	4 cut(s)	166, 263, 419, 480
StyD4I	CCNGG	1 cut(s)	283
TaiI	ACGT	2 cut(s)	81, 523
TasI	AATT	4 cut(s)	166, 263, 419, 480
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	104, 443
TspDTI	ATGAA	5 cut(s)	222, 256, 307, 417, 432
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	3 cut(s)	166, 263, 419
XceI	RCATGY	1 cut(s)	335
ZraI	GACGTC	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.