Rorug06G0014900
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
1937236 .. 1943912
6677 bp
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UTR
Exon/CDS
Intron
Rorug06G0014900.1

Sequence Viewer

Length: 1620 bp
ATGGGATTCTTCAGCACCATTTTTGGCCTCTTTGGATTCGGACTAGGGATTTCGATTGGTCTCGTCGCTGGCTATTTCCTTTTCATCTATGTCCAATCCTCAGATGTTGAGAACCCTGAAATTCGGCCGTTGGTTGAGCAAGACTCCGAAACTTTGGAGCGGATGCTTCCTGAGATACCTCTTTGGGTGAAGAATCCAGACTATGATCGCGTTGATTGGCTAAACAAATTTCTTGAGTATATGTGGCCTTATCTTGATAAGGCGATCTGCAAAACTGCTAAAGATATTGCAAAGCCCATTATTGCCGAGGAAATACCGAAGTACAAGATTGAGTCTGTTGAATTTGAGAAGCTGACTTTAGGTTCCTTACCACCAACTTTTCAAGGTATGAAGGTTTATGTAACTGATGAGAAGGAGCTGATTATGGAACCCTCAATTAAATGGGCTGCAAATCCTAATGTCCTTCTTGCTGTTAAAGCATATGGAATGACAGCAACTGTTCAGGCGGTTGATGTGCAAGTTTTTGCTGCACCACGTATTACTTTGAAGCCCTTGGTTCCAAGCTTTCCTTGTTTTGCCCAAATCAATGTGTCTCTCATGGACAGGCCTTATGTTGACTTTGGATTAAAGCTTATAGGCGTTGATCTTATGTCAATACCTGGCCTTTACAGATTTGTCCAGGAGCTTATCAAAGACCAGGTTGCTAACATGTATCTCTGGCCAAAAACTCTTGAAGTACCGATAATGGACCCAGCAAAAGCCTTTAACAGGCCTGTAGGACTTCTCCATGTGAAGGTTCTGAGGGCAATGAAGTTAAGAAAGAAAGATCTTCTTGGTGCTTCAGACCCTTATGTAAAACTAAAGCTCACAGAGAGCAATATGCCATCAAAGAAGACCACTGTTAAGCACAAGAACCTGAACCCTGAATGGAATGAGGAATTTAATATGGTTGTCAAAGACCCACAATCTCAGGCTTTAGAATTTTTAGTTTATGACTGGGATAAGGTGGGAAAACATGAGAAAATGGGTATCAATGTAATACCTTTGAAAGACCTCCCCCGTCATGAGCCAAAAGTTTTGACTCTGGACCTCCTTAAAACTATGGACTTAAATGATCCTCAGAATGAGAAGAACCGTGGGCAGCTTGAGTTGGAATTGACTTATAAACCCTTTAAAGAGGAGGACATGCAAAAAGGGTATGAAGAAACACAGACATTAGAGAAGGCTCCTGAAGGAACGCCACCTGGTGGAGGTTTGCTTGTTGTCATAGTTCATGAAGGTCAAGATCTTGAAGGAAAGCACCATTGTAATCCATCTGTGCGACTTATTCTCAGAGGGGAGGAAAGAAGGACCAAGCACCTAAAGAAGAGTAGAGATCCAAGATGGGAAGAAGAGTTTAAATTTGTGCTTGAAGAACCTCCCACTAACGACAAACTACATGTAGAGGTTGTCAGTACCTCATCAAAATTGGGCCTGCTGCATGGAAAGGAATCTCTGGGCTATGTCCAAATCAGTCTTTCTGATGTCATTTCCAACAGACGAATTAACCAGAAGTACCATCTCATAGACTCAAAGAATGGACAGGTCCAGCTAGAGCTGCAATGGAGAACTGCTGAATGA

Protein Analysis

539

Amino Acids

61.71

Weight (kDa)

6.2

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 248 2.1e-19 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 260 - 359 8.8e-26 C2 domain
C2 PF00168 419 - 521 1.6e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1164
AccB7I CCANNNNNTGG 1 cut(s) 1247
AccBSI CCGCTC 1 cut(s) 160
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 160, 506
AclWI GGATC 2 cut(s) 1109, 1370
AcoI YGGCCR 2 cut(s) 125, 719
AcsI RAATTY 6 cut(s) 120, 227, 341, 938, 980, 1400
AcuI CTGAAG 2 cut(s) 825, 1251
AdeI CACNNNGTG 1 cut(s) 1247
AfaI GTAC 4 cut(s) 323, 738, 1456, 1556
AfiI CCNNNNNNNGG 4 cut(s) 768, 793, 1247, 1250
AflIII ACRYGT 2 cut(s) 708, 1438
AgsI TTSAA 7 cut(s) 341, 383, 547, 734, 1048, 1292, 1412
AjnI CCWGG 4 cut(s) 658, 678, 696, 1243
AluBI AGCT 9 cut(s) 352, 418, 564, 631, 685, 865, 1144, 1591, 1597
AluI AGCT 9 cut(s) 352, 418, 564, 631, 685, 865, 1144, 1591, 1597
Alw26I GTCTC 2 cut(s) 65, 597
AlwI GGATC 2 cut(s) 1109, 1370
AlwNI CAGNNNCTG 1 cut(s) 497
AoxI GGCC 8 cut(s) 25, 125, 245, 605, 661, 719, 770, 1471
ApeKI GCWGC 5 cut(s) 446, 527, 1141, 1477, 1597
ApoI RAATTY 6 cut(s) 120, 227, 341, 938, 980, 1400
AspS9I GGNCC 5 cut(s) 748, 1087, 1350, 1471, 1585
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 4 cut(s) 748, 1087, 1350, 1585
BalI TGGCCA 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 899
BbvI GCAGC 5 cut(s) 433, 514, 1153, 1464, 1584
BccI CCATC 4 cut(s) 892, 1321, 1377, 1566
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 4 cut(s) 660, 680, 698, 1245
BcoDI GTCTC 2 cut(s) 65, 597
BfaI CTAG 2 cut(s) 44, 1592
BfmI CTRYAG 1 cut(s) 774
BglII AGATCT 2 cut(s) 826, 1285
BisI GCNGC 5 cut(s) 447, 528, 1142, 1478, 1598
BlsI GCNGC 5 cut(s) 448, 529, 1143, 1479, 1599
Bme1390I CCNGG 4 cut(s) 660, 680, 698, 1245
Bme18I GGWCC 4 cut(s) 748, 1087, 1350, 1585
BmgT120I GGNCC 5 cut(s) 748, 1087, 1350, 1471, 1585
BmiI GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
BmrFI CCNGG 4 cut(s) 660, 680, 698, 1245
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 1006
BpiI GAAGAC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 2 cut(s) 254, 1166
BsaAI YACGTR 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 306, 552, 1135
Bsc4I CCNNNNNNNGG 4 cut(s) 768, 793, 1247, 1250
Bse1I ACTGG 1 cut(s) 1001
Bse3DI GCAATG 2 cut(s) 813, 1607
BseBI CCWGG 4 cut(s) 660, 680, 698, 1245
BseDI CCNNGG 3 cut(s) 306, 552, 1135
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 4 cut(s) 768, 793, 1247, 1250
BseMI GCAATG 2 cut(s) 813, 1607
BseMII CTCAG 6 cut(s) 114, 162, 791, 983, 1133, 1345
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 1 cut(s) 1193
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 5 cut(s) 433, 514, 1153, 1464, 1584
BseYI CCCAGC 1 cut(s) 751
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 8 cut(s) 27, 127, 247, 607, 663, 721, 772, 1473
BsiEI CGRYCG 1 cut(s) 128
BslI CCNNNNNNNGG 4 cut(s) 768, 793, 1247, 1250
BsmAI GTCTC 2 cut(s) 65, 597
BsnI GGCC 8 cut(s) 27, 127, 247, 607, 663, 721, 772, 1473
Bso31I GGTCTC 1 cut(s) 65
Bsp143I GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
BspACI CCGC 2 cut(s) 160, 506
BspANI GGCC 8 cut(s) 27, 127, 247, 607, 663, 721, 772, 1473
BspCNI CTCAG 6 cut(s) 113, 163, 792, 982, 1132, 1344
BspFNI CGCG 1 cut(s) 210
BspHI TCATGA 2 cut(s) 1063, 1273
BspLI GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
BspPI GGATC 2 cut(s) 1109, 1370
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 813, 1607
BsrI ACTGG 1 cut(s) 1001
BssECI CCNNGG 3 cut(s) 306, 552, 1135
BssMI GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 4 cut(s) 660, 680, 698, 1245
Bst4CI ACNGT 3 cut(s) 499, 901, 1136
Bst6I CTCTTC 2 cut(s) 1361, 1386
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 70, 1475
BstDEI CTNAG 6 cut(s) 100, 171, 800, 969, 1119, 1331
BstDSI CCRYGG 1 cut(s) 1135
BstENI CCTNNNNNAGG 2 cut(s) 766, 1248
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 210
BstKTI GATC 7 cut(s) 208, 267, 646, 829, 1117, 1288, 1378
BstMAI GTCTC 2 cut(s) 65, 597
BstMBI GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 476, 1597
BstNI CCWGG 4 cut(s) 660, 680, 698, 1245
BstNSI RCATGY 3 cut(s) 712, 1189, 1442
BstSCI CCNGG 4 cut(s) 658, 678, 696, 1243
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 5 cut(s) 433, 514, 1153, 1464, 1584
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 3 cut(s) 826, 1285, 1375
BstYI RGATCY 3 cut(s) 826, 1285, 1375
BstZI CGGCCG 1 cut(s) 125
BsuRI GGCC 8 cut(s) 27, 127, 247, 607, 663, 721, 772, 1473
BtgI CCRYGG 1 cut(s) 1135
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 897
Cac8I GCNNGC 2 cut(s) 70, 1475
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 2 cut(s) 1063, 1273
Cfr13I GGNCC 5 cut(s) 748, 1087, 1350, 1471, 1585
CsiI ACCWGGT 2 cut(s) 696, 1243
Csp6I GTAC 4 cut(s) 322, 737, 1455, 1555
CviAII CATG 9 cut(s) 598, 709, 788, 1016, 1064, 1186, 1274, 1439, 1481
CviQI GTAC 4 cut(s) 322, 737, 1455, 1555
DdeI CTNAG 6 cut(s) 100, 171, 800, 969, 1119, 1331
DpnI GATC 7 cut(s) 207, 266, 645, 828, 1116, 1287, 1377
DpnII GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
DraI TTTAAA 2 cut(s) 1174, 1399
DraIII CACNNNGTG 1 cut(s) 1247
EaeI YGGCCR 2 cut(s) 125, 719
EagI CGGCCG 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 1361, 1386
EarI CTCTTC 2 cut(s) 1361, 1386
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 552
Eco147I AGGCCT 2 cut(s) 607, 772
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 4 cut(s) 748, 1087, 1350, 1585
Eco52I CGGCCG 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 825, 1251
EcoNI CCTNNNNNAGG 2 cut(s) 766, 1248
EcoRII CCWGG 4 cut(s) 658, 678, 696, 1243
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 9 cut(s) 601, 712, 791, 1019, 1067, 1189, 1277, 1442, 1484
FalI AAGNNNNNCTT 4 cut(s) 553, 585, 816, 848
FatI CATG 9 cut(s) 597, 708, 787, 1015, 1063, 1185, 1273, 1438, 1480
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 447, 528, 1142, 1478, 1598
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 5 cut(s) 447, 528, 1142, 1478, 1598
FspBI CTAG 2 cut(s) 44, 1592
GluI GCNGC 5 cut(s) 447, 528, 1142, 1478, 1598
GsaI CCCAGC 1 cut(s) 755
HaeIII GGCC 8 cut(s) 27, 127, 247, 607, 663, 721, 772, 1473
Hin1II CATG 9 cut(s) 601, 712, 791, 1019, 1067, 1189, 1277, 1442, 1484
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 2 cut(s) 562, 629
HinfI GANTC 8 cut(s) 6, 36, 143, 193, 332, 1081, 1490, 1568
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 8 cut(s) 41, 103, 148, 801, 844, 1122, 1334, 1522
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 9 cut(s) 385, 406, 473, 787, 1216, 1226, 1271, 1286, 1341
HpyCH4III ACNGT 3 cut(s) 499, 901, 1136
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 8 cut(s) 270, 290, 449, 517, 530, 1189, 1480, 1600
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 1597
HpyF3I CTNAG 6 cut(s) 100, 171, 800, 969, 1119, 1331
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 9 cut(s) 601, 712, 791, 1019, 1067, 1189, 1277, 1442, 1484
Kzo9I GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
LmnI GCTCC 4 cut(s) 157, 415, 682, 1231
Lsp1109I GCAGC 5 cut(s) 433, 514, 1153, 1464, 1584
LweI GCATC 1 cut(s) 153
MabI ACCWGGT 2 cut(s) 696, 1243
MaeI CTAG 2 cut(s) 44, 1592
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 1 cut(s) 400
MalI GATC 7 cut(s) 207, 266, 645, 828, 1116, 1287, 1377
MbiI CCGCTC 1 cut(s) 160
MboI GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
MboII GAAGA 9 cut(s) 202, 821, 904, 1141, 1214, 1378, 1400, 1403, 1424
MflI RGATCY 3 cut(s) 826, 1285, 1375
MlsI TGGCCA 1 cut(s) 721
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 4 cut(s) 137, 341, 1075, 1562
MmeI TCCRAC 2 cut(s) 1131, 1557
Mox20I TGGCCA 1 cut(s) 721
MscI TGGCCA 1 cut(s) 721
Msp20I TGGCCA 1 cut(s) 721
MspR9I CCNGG 4 cut(s) 660, 680, 698, 1245
MvaI CCWGG 4 cut(s) 660, 680, 698, 1245
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 476, 1597
NdeI CATATG 1 cut(s) 481
NdeII GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
NlaIII CATG 9 cut(s) 601, 712, 791, 1019, 1067, 1189, 1277, 1442, 1484
NlaIV GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
NmeAIII GCCGAG 1 cut(s) 331
NspI RCATGY 3 cut(s) 712, 1189, 1442
PagI TCATGA 2 cut(s) 1063, 1273
PceI AGGCCT 2 cut(s) 607, 772
PciI ACATGT 2 cut(s) 708, 1438
PfeI GAWTC 4 cut(s) 6, 36, 193, 1490
PflMI CCANNNNNTGG 1 cut(s) 1247
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 5 cut(s) 448, 529, 1143, 1479, 1599
PleI GAGTC 4 cut(s) 137, 340, 1075, 1562
PpsI GAGTC 4 cut(s) 137, 340, 1075, 1562
Ppu21I YACGTR 1 cut(s) 536
PscI ACATGT 2 cut(s) 708, 1438
PsiI TTATAA 1 cut(s) 1164
Psp6I CCWGG 4 cut(s) 658, 678, 696, 1243
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 4 cut(s) 658, 678, 696, 1243
PspN4I GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
PspPI GGNCC 5 cut(s) 748, 1087, 1350, 1471, 1585
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 3 cut(s) 826, 1285, 1375
RsaI GTAC 4 cut(s) 323, 738, 1456, 1556
RsaNI GTAC 4 cut(s) 322, 737, 1455, 1555
SatI GCNGC 5 cut(s) 447, 528, 1142, 1478, 1598
Sau3AI GATC 7 cut(s) 205, 264, 643, 826, 1114, 1285, 1375
Sau96I GGNCC 5 cut(s) 748, 1087, 1350, 1471, 1585
SchI GAGTC 4 cut(s) 137, 341, 1075, 1562
ScrFI CCNGG 4 cut(s) 660, 680, 698, 1245
SexAI ACCWGGT 2 cut(s) 696, 1243
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 4 cut(s) 748, 1087, 1350, 1585
SmlI CTYRAG 2 cut(s) 233, 1145
SmoI CTYRAG 2 cut(s) 233, 1145
SseBI AGGCCT 2 cut(s) 607, 772
SsiI CCGC 2 cut(s) 160, 506
SspMI CTAG 2 cut(s) 44, 1592
StuI AGGCCT 2 cut(s) 607, 772
StyD4I CCNGG 4 cut(s) 658, 678, 696, 1243
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 3 cut(s) 499, 901, 1136
TaiI ACGT 1 cut(s) 538
TaqI TCGA 1 cut(s) 53
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 4 cut(s) 6, 36, 193, 1490
TscAI CASTG 1 cut(s) 904
TseI GCWGC 5 cut(s) 446, 527, 1141, 1477, 1597
TspDTI ATGAA 6 cut(s) 73, 404, 824, 1215, 1262, 1290
TspRI CASTG 1 cut(s) 904
Van91I CCANNNNNTGG 1 cut(s) 1247
VpaK11BI GGWCC 4 cut(s) 748, 1087, 1350, 1585
XagI CCTNNNNNAGG 2 cut(s) 766, 1248
XapI RAATTY 6 cut(s) 120, 227, 341, 938, 980, 1400
XceI RCATGY 3 cut(s) 712, 1189, 1442
XspI CTAG 2 cut(s) 44, 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.