Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

26587243 .. 26601202

Gene Structure 13960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG272400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACGCCTGATTCTAGGAAAGTTGGGACGGGGATGGCAGCATCCCCATCTCCTTTTCTCACGCCTCGGCCCGAAAAGCGGCGTGGTACTCTTGATTGGAATTCGAATCACAAGGATAAGGATAAGGATAAGGAAGTTAATGTGCAAGTTGTGCTCAGATGCAGAGTCTATCATATGAAGTGTTTTCGTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGGTACTTCTATGCATCAATTTTAGCTTCACGAGTATTAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

99

Amino Acids

11.49

Weight (kDa)

9.91

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	100, 232
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	88, 258
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	195
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	223, 279
AluI	AGCT	2 cut(s)	223, 279
Alw21I	GWGCWC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	100, 232
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	104
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	28, 55
BciT130I	CCWGG	1 cut(s)	254
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	39, 80
BlsI	GCNGC	2 cut(s)	40, 81
Bme1390I	CCNGG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	3 cut(s)	50, 149, 276
Bpu14I	TTCGAA	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	3 cut(s)	39, 41, 225
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	65
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstBI	TTCGAA	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	39, 41, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 151
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	39, 41, 225
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	13
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	87, 257
CviJI	RGCY	3 cut(s)	70, 223, 279
CviKI_1	RGCY	3 cut(s)	70, 223, 279
CviQI	GTAC	2 cut(s)	87, 257
DdeI	CTNAG	1 cut(s)	155
EcoRI	GAATTC	2 cut(s)	100, 232
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	269
FaiI	YATR	4 cut(s)	174, 176, 238, 265
FaqI	GGGAC	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	39, 80
FokI	GGATG	3 cut(s)	28, 46, 212
Fsp4HI	GCNGC	2 cut(s)	39, 80
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	39, 80
HaeIII	GGCC	1 cut(s)	70
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	11, 106, 165
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	3 cut(s)	92, 229, 283
HpyCH4V	TGCA	4 cut(s)	145, 162, 246, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 151
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	5
LpnPI	CCDG	5 cut(s)	21, 233, 239, 242, 266
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	3 cut(s)	50, 149, 276
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	15
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	100, 232, 271
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	75, 225
Mph1103I	ATGCAT	1 cut(s)	269
MseI	TTAA	2 cut(s)	138, 291
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	76, 151
NdeI	CATATG	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	11, 106
PkrI	GCNGC	2 cut(s)	40, 81
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	88, 258
RsaNI	GTAC	2 cut(s)	87, 257
SaqAI	TTAA	2 cut(s)	138, 291
SatI	GCNGC	2 cut(s)	39, 80
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	3 cut(s)	225, 258, 281
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	3 cut(s)	50, 149, 276
SfuI	TTCGAA	1 cut(s)	104
Sse9I	AATT	3 cut(s)	100, 232, 271
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	252
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	100, 232, 271
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	11, 106
Tru1I	TTAA	2 cut(s)	138, 291
Tru9I	TTAA	2 cut(s)	138, 291
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	191, 225
XapI	RAATTY	2 cut(s)	100, 232
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.