Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Reverse (-)

33788154 .. 33788804

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTATTTGGATGCTTTGCTTTCTACGACAATTTAAGAGTTCTGTACGAGAGATCGGATTACTTGGCACTGCGTTTGGGCATCATCACCGTCCGATCTCATCCTCTATTTCAATCCAAGACTGCTGGTATGGGAACAAAAGAGATAAAGAAAGATCGTAATTACCAGGTGATAAAGGTAGAGCATTCACATGAAGGAAGAGGAAAGAAGCCGCGGGGAAGTTGCTTCGATCCGCTCATGCTTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGTAATCATACCGTAGTTCCGGTTCTGAAAGGAAGGTACATGCAGCCTCTAGTGTCCAAAGTTCCAGTAATGGTAGTAGAAGGGGACAATGAGATTGAGAAACATGCTGGAAATCAAATGTTTGCTGCTGAAACAATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009846 GO:0009856 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0044237 GO:0044706 GO:0048856 GO:0051704 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

139

Amino Acids

15.75

Weight (kDa)

9.14

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	214
AciI	CCGC	3 cut(s)	212, 214, 233
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	2 cut(s)	47, 314
AgsI	TTSAA	2 cut(s)	113, 269
AjnI	CCWGG	2 cut(s)	165, 258
AlwI	GGATC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	319, 401
ApoI	RAATTY	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	79, 181
BbvI	GCAGC	2 cut(s)	331, 388
BciT130I	CCWGG	2 cut(s)	167, 260
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	3 cut(s)	212, 320, 402
BlsI	GCNGC	3 cut(s)	213, 321, 403
Bme1390I	CCNGG	2 cut(s)	167, 260
BmrFI	CCNGG	2 cut(s)	167, 260
BmsI	GCATC	2 cut(s)	2, 90
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	167, 260
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	17, 100
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	331, 388
Bsh1236I	CGCG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	53, 95, 154, 229
BspACI	CCGC	3 cut(s)	212, 214, 233
BspFNI	CGCG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	53, 95, 154, 229
Bst2UI	CCWGG	2 cut(s)	167, 260
Bst4CI	ACNGT	2 cut(s)	91, 289
Bst6I	CTCTTC	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	17, 100
BstFNI	CGCG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	56, 98, 157, 232
BstMBI	GATC	4 cut(s)	53, 95, 154, 229
BstNI	CCWGG	2 cut(s)	167, 260
BstNSI	RCATGY	2 cut(s)	319, 383
BstSCI	CCNGG	2 cut(s)	165, 258
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	331, 388
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	17, 100
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	68
Cfr42I	CCGCGG	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	46, 313
CviAII	CATG	4 cut(s)	191, 238, 316, 380
CviJI	RGCY	2 cut(s)	211, 322
CviKI_1	RGCY	2 cut(s)	211, 322
CviQI	GTAC	2 cut(s)	46, 313
DpnI	GATC	4 cut(s)	55, 97, 156, 231
DpnII	GATC	4 cut(s)	53, 95, 154, 229
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	165, 258
FaeI	CATG	4 cut(s)	194, 241, 319, 383
FaiI	YATR	6 cut(s)	131, 192, 239, 285, 317, 381
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	4 cut(s)	190, 237, 315, 379
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	212, 320, 402
FokI	GGATG	2 cut(s)	24, 87
Fsp4HI	GCNGC	3 cut(s)	212, 320, 402
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	3 cut(s)	212, 320, 402
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	4 cut(s)	194, 241, 319, 383
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	79, 181
Hpy188I	TCNGA	3 cut(s)	58, 95, 303
HpyAV	CCTTC	3 cut(s)	188, 303, 350
HpyCH4III	ACNGT	2 cut(s)	91, 289
HpyCH4V	TGCA	1 cut(s)	319
Hsp92II	CATG	4 cut(s)	194, 241, 319, 383
KspI	CCGCGG	1 cut(s)	215
Kzo9I	GATC	4 cut(s)	53, 95, 154, 229
LpnPI	CCDG	8 cut(s)	111, 152, 179, 245, 272, 309, 354, 369
Lsp1109I	GCAGC	2 cut(s)	331, 388
LweI	GCATC	2 cut(s)	2, 90
MabI	ACCWGGT	1 cut(s)	165
MaeI	CTAG	1 cut(s)	326
MalI	GATC	4 cut(s)	55, 97, 156, 231
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	4 cut(s)	53, 95, 154, 229
MboII	GAAGA	2 cut(s)	210, 257
MfeI	CAATTG	1 cut(s)	411
MluCI	AATT	4 cut(s)	31, 160, 254, 411
MnlI	CCTC	3 cut(s)	114, 194, 333
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	189, 242
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	167, 260
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	167, 260
MvnI	CGCG	1 cut(s)	214
NdeII	GATC	4 cut(s)	53, 95, 154, 229
NlaIII	CATG	4 cut(s)	194, 241, 319, 383
NspI	RCATGY	2 cut(s)	319, 383
PctI	GAATGC	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	213, 321, 403
Psp6I	CCWGG	2 cut(s)	165, 258
PspGI	CCWGG	2 cut(s)	165, 258
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
RsaI	GTAC	2 cut(s)	47, 314
RsaNI	GTAC	2 cut(s)	46, 313
RseI	CAYNNNNRTG	2 cut(s)	189, 242
SacII	CCGCGG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	3 cut(s)	212, 320, 402
Sau3AI	GATC	4 cut(s)	53, 95, 154, 229
ScrFI	CCNGG	2 cut(s)	167, 260
SetI	ASST	4 cut(s)	171, 180, 264, 314
SexAI	ACCWGGT	1 cut(s)	165
SfaNI	GCATC	2 cut(s)	2, 90
Sfr303I	CCGCGG	1 cut(s)	215
SgrBI	CCGCGG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	189, 242
Sse9I	AATT	4 cut(s)	31, 160, 254, 411
SsiI	CCGC	3 cut(s)	212, 214, 233
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	165, 258
TaaI	ACNGT	2 cut(s)	91, 289
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	31, 160, 254, 411
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	319, 401
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	2 cut(s)	319, 383
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.