Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Reverse (-)

33800175 .. 33805850

Gene Structure 5676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTCCAGAACATGAGAGATCGATCTGGGTACCAAAGGATTCAACTTCGGAGGCAAAAGCAAGAGCCTTTATTCGCAGCAGATCTGGCCACTGATGCCCAGAATTGGGAGGTCACCGGCGACCGTCTTTACTATGGGATGGGATGGGATGGGATGGGATGGTACATACAAAATGAATTAGGGGAGGAGCGCAGAGTTTCCGTATGTATTTATGAGAGAGTGGCATGTCAATCGGATTACTTGGCACTGCGTTTGGGCATCATCACCGTCCGATCTCATCCTCTATTTCAATCCAAGACTGCTGGTATGGGAACGGAAGAGATAAAGAAAGATGCGGATGCCGCAATTGGCAATCTCATTTGGCATGTGATCAATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.5

Weight (kDa)

6.1

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AciI	CCGC	2 cut(s)	335, 342
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	2 cut(s)	32, 164
AfiI	CCNNNNNNNGG	2 cut(s)	105, 106
AgsI	TTSAA	2 cut(s)	44, 290
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	106, 256
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	5 cut(s)	133, 138, 143, 148, 153
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BclI	TGATCA	1 cut(s)	369
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	2 cut(s)	78, 342
BlsI	GCNGC	2 cut(s)	79, 343
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	4 cut(s)	85, 267, 322, 328
Bsa29I	ATCGAT	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 106
Bse118I	RCCGGY	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	22
BseGI	GGATG	7 cut(s)	144, 149, 154, 159, 164, 277, 343
BseLI	CCNNNNNNNGG	2 cut(s)	105, 106
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	30
BshVI	ATCGAT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	105, 106
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	19, 23, 82, 272, 369
BspACI	CCGC	2 cut(s)	335, 342
BspANI	GGCC	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	5 cut(s)	19, 23, 82, 272, 369
Bst4CI	ACNGT	2 cut(s)	125, 268
Bst6I	CTCTTC	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	7 cut(s)	144, 149, 154, 159, 164, 277, 343
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	5 cut(s)	22, 26, 85, 275, 372
BstMBI	GATC	5 cut(s)	19, 23, 82, 272, 369
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 341
BstNSI	RCATGY	2 cut(s)	228, 368
BstPI	GGTNACC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	22
BtsCI	GGATG	7 cut(s)	144, 149, 154, 159, 164, 277, 343
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	90, 245
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	31, 163
CviAII	CATG	3 cut(s)	13, 225, 365
CviJI	RGCY	2 cut(s)	67, 89
CviKI_1	RGCY	2 cut(s)	67, 89
CviQI	GTAC	2 cut(s)	31, 163
DpnI	GATC	5 cut(s)	21, 25, 84, 274, 371
DpnII	GATC	5 cut(s)	19, 23, 82, 272, 369
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
FaeI	CATG	3 cut(s)	16, 228, 368
FaiI	YATR	8 cut(s)	14, 135, 167, 205, 213, 226, 308, 366
FatI	CATG	3 cut(s)	12, 224, 364
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	78, 342
FokI	GGATG	7 cut(s)	151, 156, 161, 166, 171, 264, 350
Fsp4HI	GCNGC	2 cut(s)	78, 342
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	78, 342
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	16, 228, 368
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	106, 256
Hpy188I	TCNGA	3 cut(s)	51, 235, 272
Hpy188III	TCNNGA	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	125, 268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 341
Hsp92II	CATG	3 cut(s)	16, 228, 368
HspAI	GCGC	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	5 cut(s)	19, 23, 82, 272, 369
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	12, 20, 71, 113, 130, 288
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	4 cut(s)	85, 267, 322, 328
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	5 cut(s)	21, 25, 84, 274, 371
MboI	GATC	5 cut(s)	19, 23, 82, 272, 369
MboII	GAAGA	1 cut(s)	329
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	103, 176, 345
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	4 cut(s)	45, 103, 178, 291
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 341
NdeII	GATC	5 cut(s)	19, 23, 82, 272, 369
NlaIII	CATG	3 cut(s)	16, 228, 368
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	228, 368
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	79, 343
PspEI	GGTNACC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	2 cut(s)	32, 164
RsaNI	GTAC	2 cut(s)	31, 163
SatI	GCNGC	2 cut(s)	78, 342
Sau3AI	GATC	5 cut(s)	19, 23, 82, 272, 369
SetI	ASST	1 cut(s)	114
SfaNI	GCATC	4 cut(s)	85, 267, 322, 328
SgrAI	CRCCGGYG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	103, 176, 345
SsiI	CCGC	2 cut(s)	335, 342
TaaI	ACNGT	2 cut(s)	125, 268
TaqI	TCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	103, 176, 345
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	2 cut(s)	97, 252
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	2 cut(s)	190, 329
TspRI	CASTG	2 cut(s)	97, 252
XceI	RCATGY	2 cut(s)	228, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.