Rorug04G0001600

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008179
Physical Location & Seq
Reverse (-)
334319 .. 336173
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0001600.1

Sequence Viewer

Length: 1785 bp
ATGCATCATGTGATCAGGAGTCGGTTCGCGTCTTCTGGCCTTTGCTACATCAAAATCAAAGACTTGGTCTCTAAAGGATTATATGATCAAACCCTTCAACTTTACAAAGACGAGCTCCATTTCCTCCACGCAAACACCTCCATCCTTCCTTCAATCATCAAAGCATGCTCCTCCCACCGTGGGCGTGGGCATGGGCTTCAACTTCACTGCATGGCTCTCAAGTCAGGCTCCATCTCAGACTCCGTTGTATCCAATTCTCTCATCTCCATGTATGCCAAACTCGCACTTGTTGGAGCAGCACGCCGGGTGTTTGATGAAATGCCTGAAAGAGACACCATCACCTGGAATTCCATGATGAATTGCTACATACAAAATGGGCATCTTGCAAAAGCACTTGATGTGCTTAAACAAATGTATTCGAATGGTTTTACACTGAAAGCGGAGTTGATTGCCAGCATCATATCAGTTTGTGCAAGGACAAGAAAGTTTAGACTAGGGAGACAGATTCATGGCCTCCTTGTCGTCCATGACGAGATTGAAGAGTCGGTGTTCTTGTCAACGGCTCTGCTTGATCTGTATATGAGGTGTCACGAAACTTTGATGGCCTTCCATGTTTTCTGTCACATGCAAGTGAAGAATGAAGTCTCTTGGACTGCCATGATTTCGGGATGCATTGCTAATCTCAGCTATGGGATGGCAATGAATTGCTTCCGCGAAATGCAGGTTGAAGGATTGAAACCCAATCGAGTCACTGTGCTTGCCATTTTACCAGCTTGTGCCGAGTTGGGAGACATAGGACATGGGAAGGAAATTCATGCCTATACTTTTCGTCATGGGTTTGAATCAGATCACCATTGCTCAGCAGCTCTCATACACATGTACTGCAAGCGCGGGAAAGAACTGCGTCCTGCCAAGCTAATTTTCGACAAGGTATCTCTTAAAGATGTTGTTATGTGGAGTTTGATGATTGGGAGTTATTCTCAATGTGGGGATAGCGTGAAAGCTTTGGAACTTTTCAGTCAAATGCGAGCTCAAGGAATTGATCCAAACTCTGTAACGTTACTGGCCCTCATTTCCGCCTGCACCTCACTTTCTTCTCTACAGATCGGATGTGGAGTCCATAGCTATGTCTTGAAATCTGGGTTAAATTCTGACATTTTCATTGGGAATGCACTTATCAATATGTATGCAAAGTGTGGTTGTCTCACGGATTCACATGAAATTTTCAAGGAGATGCCAAGTATAGATTCTGTCTCCTGGAGCACAATGATTGAGAGCTATGGCCTTCATGGTCGTGGTGATGAAGCTTTGAAACTCTTTCTTGAGATGCAAGATAGAGGGATAGAGCCTGATGCGGTTGCTTTCCTCTCAGTTTTATCTGCTTGTAACCATGCTGGCCTGGTGGAAGAAGGCAAGAAGATCTTTAAACTTATGAGAGAAGATAGTAAAATAACTGTATCTTTAGAGCATTATGCTTGCTATATTAATCTTCTTGGAAAGTTTGGAAAGCTCGAAGATGCTTGTGAGATTGTAAGATCAATGCCCATGAAACCAAGTAGTAGAATTTGGAGTTCTTTGGTTACAGCTTGCAAGGTTCACGGAAGGTTAGAAATAGCAGAATCCTTGGCGCATCATCTTGTTAGAAAGGAGCCTCAGAACGCTGCCAACTATACCTTACTGAGCATGGTTCATGCTGAAGCTGGTAACTGGCTTGGCGTGGAGGAGGTGAGGAGAGTCATGAGAGTACACAGATTAAGGAAATGCTACGGATTCAGCAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000122 GO:0000278 GO:0000280 GO:0000428 GO:0000819 GO:0001654 GO:0001655 GO:0001656 GO:0001822 GO:0003006 GO:0003007 GO:0003008 GO:0003151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007507 GO:0007548 GO:0007600 GO:0007605 GO:0008022 GO:0008104 GO:0008150 GO:0009314 GO:0009628 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010165 GO:0010171 GO:0010212 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010720 GO:0016043 GO:0016591 GO:0019219 GO:0019222 GO:0019899 GO:0019904 GO:0022008 GO:0022402 GO:0022414 GO:0030154 GO:0030326 GO:0030334 GO:0030335 GO:0030880 GO:0031056 GO:0031058 GO:0031063 GO:0031065 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032039 GO:0032116 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033554 GO:0034085 GO:0034086 GO:0034088 GO:0034502 GO:0034613 GO:0035107 GO:0035108 GO:0035112 GO:0035113 GO:0035115 GO:0035136 GO:0035239 GO:0035261 GO:0035295 GO:0040007 GO:0040008 GO:0040012 GO:0040017 GO:0042471 GO:0042634 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043388 GO:0043583 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0045995 GO:0047485 GO:0048285 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048589 GO:0048592 GO:0048598 GO:0048608 GO:0048638 GO:0048699 GO:0048731 GO:0048736 GO:0048806 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0050896 GO:0050954 GO:0051094 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051641 GO:0051716 GO:0051960 GO:0051962 GO:0055029 GO:0055123 GO:0060065 GO:0060173 GO:0060255 GO:0060284 GO:0060322 GO:0060323 GO:0060324 GO:0060325 GO:0061008 GO:0061010 GO:0061038 GO:0061458 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0070087 GO:0070727 GO:0071168 GO:0071214 GO:0071478 GO:0071479 GO:0071481 GO:0071840 GO:0071921 GO:0072001 GO:0072359 GO:0080090 GO:0090311 GO:0090312 GO:0090596 GO:0090694 GO:0098813 GO:0104004 GO:0140014 GO:1902275 GO:1902494 GO:1902679 GO:1903047 GO:1903506 GO:1903507 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2001141 GO:2001222 GO:2001224 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cohesin_HEAT Nipped-B_C PHD

Protein Analysis

594

Amino Acids

66.35

Weight (kDa)

8.52

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 110 - 143 3.8e-07 PPR repeat family
PPR PF01535 113 - 143 2.6e-07 PPR repeat
PPR_2 PF13041 213 - 260 5.7e-08 PPR repeat family
PPR_2 PF13041 314 - 361 3.9e-10 PPR repeat family
PPR PF01535 317 - 347 1.6e-06 PPR repeat
PPR_2 PF13041 416 - 462 9.9e-11 PPR repeat family
PPR PF01535 418 - 448 1.2e-08 PPR repeat
E_motif PF20431 533 - 594 4.8e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 712
AccB7I CCANNNNNTGG 1 cut(s) 342
AccII CGCG 3 cut(s) 29, 714, 891
AciI CCGC 5 cut(s) 440, 712, 891, 1077, 1355
AclI AACGTT 1 cut(s) 1058
AclWI GGATC 1 cut(s) 1037
AcsI RAATTY 6 cut(s) 346, 810, 1147, 1221, 1563, 1779
AcuI CTGAAG 1 cut(s) 1716
AfaI GTAC 2 cut(s) 881, 1746
AfiI CCNNNNNNNGG 2 cut(s) 180, 342
AflIII ACRYGT 1 cut(s) 876
AjnI CCWGG 3 cut(s) 341, 1256, 1398
AjuI GAANNNNNNNTTGG 4 cut(s) 905, 937, 1231, 1263
Alw21I GWGCWC 3 cut(s) 117, 1033, 1265
Alw26I GTCTC 7 cut(s) 73, 324, 493, 649, 783, 1208, 1258
AlwI GGATC 1 cut(s) 1037
AoxI GGCC 6 cut(s) 37, 511, 603, 1065, 1282, 1396
ApeKI GCWGC 3 cut(s) 296, 863, 1661
ApoI RAATTY 6 cut(s) 346, 810, 1147, 1221, 1563, 1779
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AseI ATTAAT 1 cut(s) 1485
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 2 cut(s) 891, 1630
AspS9I GGNCC 1 cut(s) 1066
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 331, 842, 1310, 1738
AsuII TTCGAA 1 cut(s) 419
BanII GRGCYC 2 cut(s) 117, 1033
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 3 cut(s) 117, 1033, 1265
BbvI GCAGC 3 cut(s) 308, 875, 1648
BccI CCATC 5 cut(s) 149, 239, 344, 595, 688
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 3 cut(s) 343, 1258, 1400
BciVI GTATCC 1 cut(s) 259
BclI TGATCA 2 cut(s) 12, 85
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 7 cut(s) 73, 324, 493, 649, 783, 1208, 1258
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 1100
BfuAI ACCTGC 1 cut(s) 712
BfuI GTATCC 1 cut(s) 259
BglII AGATCT 1 cut(s) 1419
BisI GCNGC 3 cut(s) 297, 864, 1662
BlpI GCTNAGC 1 cut(s) 859
BlsI GCNGC 3 cut(s) 298, 865, 1663
Bme1390I CCNGG 4 cut(s) 305, 343, 1258, 1400
BmgT120I GGNCC 1 cut(s) 1066
BmiI GGNNCC 2 cut(s) 229, 1650
BmrFI CCNGG 4 cut(s) 305, 343, 1258, 1400
BmsI GCATC 9 cut(s) 13, 388, 465, 659, 1224, 1317, 1342, 1507, 1639
BpiI GAAGAC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 964, 996
BpmI CTGGAG 1 cut(s) 1279
Bpu1102I GCTNAGC 1 cut(s) 859
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 3 cut(s) 203, 1017, 1343
BpuMI CCSGG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 178, 1623
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 342
Bse1I ACTGG 2 cut(s) 1068, 1712
Bse3DI GCAATG 3 cut(s) 672, 705, 853
BseBI CCWGG 3 cut(s) 343, 1258, 1400
BseDI CCNNGG 2 cut(s) 178, 1623
BseGI GGATG 4 cut(s) 141, 674, 699, 1115
BseLI CCNNNNNNNGG 2 cut(s) 180, 342
BseMI GCAATG 3 cut(s) 672, 705, 853
BseMII CTCAG 6 cut(s) 249, 697, 873, 1383, 1667, 1670
BseNI ACTGG 2 cut(s) 1068, 1712
BseRI GAGGAG 3 cut(s) 160, 1736, 1744
BseXI GCAGC 3 cut(s) 308, 875, 1648
BsgI GTGCAG 1 cut(s) 1066
Bsh1236I CGCG 3 cut(s) 29, 714, 891
BshFI GGCC 6 cut(s) 39, 513, 605, 1067, 1284, 1398
BsiHKAI GWGCWC 3 cut(s) 117, 1033, 1265
BsiSI CCGG 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 180, 342
BsmAI GTCTC 7 cut(s) 73, 324, 493, 649, 783, 1208, 1258
BsmI GAATGC 1 cut(s) 1174
BsnI GGCC 6 cut(s) 39, 513, 605, 1067, 1284, 1398
Bso31I GGTCTC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 3 cut(s) 117, 1033, 1265
Bsp143I GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
Bsp1720I GCTNAGC 1 cut(s) 859
BspACI CCGC 5 cut(s) 440, 712, 891, 1077, 1355
BspANI GGCC 6 cut(s) 39, 513, 605, 1067, 1284, 1398
BspCNI CTCAG 6 cut(s) 248, 696, 872, 1382, 1666, 1671
BspFNI CGCG 3 cut(s) 29, 714, 891
BspHI TCATGA 1 cut(s) 1737
BspLI GGNNCC 2 cut(s) 229, 1650
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 1 cut(s) 1037
BspT104I TTCGAA 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 3 cut(s) 672, 705, 853
BsrI ACTGG 2 cut(s) 1068, 1712
BssECI CCNNGG 2 cut(s) 178, 1623
BssMI GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
BssT1I CCWWGG 1 cut(s) 1623
Bst2UI CCWGG 3 cut(s) 343, 1258, 1400
Bst4CI ACNGT 3 cut(s) 179, 754, 1456
Bst6I CTCTTC 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 419
BstDEI CTNAG 6 cut(s) 235, 683, 859, 1369, 1653, 1679
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 4 cut(s) 141, 674, 699, 1115
BstFNI CGCG 3 cut(s) 29, 714, 891
BstHHI GCGC 2 cut(s) 891, 1630
BstKTI GATC 8 cut(s) 15, 88, 574, 850, 1045, 1107, 1422, 1538
BstMAI GTCTC 7 cut(s) 73, 324, 493, 649, 783, 1208, 1258
BstMBI GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 3 cut(s) 343, 1258, 1400
BstNSI RCATGY 3 cut(s) 168, 628, 880
BstSCI CCNGG 4 cut(s) 303, 341, 1256, 1398
BstSFI CTRYAG 1 cut(s) 1100
BstUI CGCG 3 cut(s) 29, 714, 891
BstV1I GCAGC 3 cut(s) 308, 875, 1648
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 1419
BstYI RGATCY 1 cut(s) 1419
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 6 cut(s) 39, 513, 605, 1067, 1284, 1398
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 4 cut(s) 141, 674, 699, 1115
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 3 cut(s) 205, 431, 750
BveI ACCTGC 1 cut(s) 712
CciI TCATGA 1 cut(s) 1737
CfoI GCGC 2 cut(s) 891, 1630
Cfr13I GGNCC 1 cut(s) 1066
CseI GACGC 2 cut(s) 18, 893
Csp6I GTAC 2 cut(s) 880, 1745
CviQI GTAC 2 cut(s) 880, 1745
DdeI CTNAG 6 cut(s) 235, 683, 859, 1369, 1653, 1679
DpnI GATC 8 cut(s) 14, 87, 573, 849, 1044, 1106, 1421, 1537
DpnII GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
DraI TTTAAA 1 cut(s) 1426
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
EciI GGCGGA 1 cut(s) 1066
Ecl136II GAGCTC 2 cut(s) 115, 1031
Eco130I CCWWGG 1 cut(s) 1623
Eco24I GRGCYC 2 cut(s) 117, 1033
Eco31I GGTCTC 1 cut(s) 73
Eco53kI GAGCTC 2 cut(s) 115, 1031
Eco57I CTGAAG 1 cut(s) 1716
EcoICRI GAGCTC 2 cut(s) 115, 1031
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 341, 1256, 1398
EcoT14I CCWWGG 1 cut(s) 1623
EcoT22I ATGCAT 2 cut(s) 6, 674
EcoT38I GRGCYC 2 cut(s) 117, 1033
ErhI CCWWGG 1 cut(s) 1623
FalI AAGNNNNNCTT 2 cut(s) 1406, 1438
FauI CCCGC 1 cut(s) 884
FbaI TGATCA 2 cut(s) 12, 85
Fnu4HI GCNGC 3 cut(s) 297, 864, 1662
FokI GGATG 4 cut(s) 128, 681, 706, 1122
FriOI GRGCYC 2 cut(s) 117, 1033
Fsp4HI GCNGC 3 cut(s) 297, 864, 1662
FspBI CTAG 1 cut(s) 494
GlaI GCGC 2 cut(s) 890, 1629
GluI GCNGC 3 cut(s) 297, 864, 1662
GsuI CTGGAG 1 cut(s) 1279
HaeIII GGCC 6 cut(s) 39, 513, 605, 1067, 1284, 1398
HapII CCGG 1 cut(s) 304
HgaI GACGC 2 cut(s) 18, 893
HhaI GCGC 2 cut(s) 891, 1630
Hin6I GCGC 2 cut(s) 889, 1628
HinP1I GCGC 2 cut(s) 889, 1628
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 2 cut(s) 1002, 1305
HpaII CCGG 1 cut(s) 304
HphI GGTGA 4 cut(s) 331, 842, 1310, 1738
Hpy166II GTNNAC 3 cut(s) 558, 1597, 1747
Hpy188I TCNGA 5 cut(s) 238, 847, 1109, 1153, 1656
Hpy188III TCNNGA 6 cut(s) 16, 590, 666, 1132, 1322, 1738
Hpy8I GTNNAC 3 cut(s) 558, 1597, 1747
HpyAV CCTTC 9 cut(s) 104, 155, 159, 616, 722, 799, 1295, 1403, 1596
HpyCH4III ACNGT 3 cut(s) 179, 754, 1456
HpyCH4IV ACGT 1 cut(s) 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 6 cut(s) 235, 683, 859, 1369, 1653, 1679
HpySE526I ACGT 1 cut(s) 1058
HspAI GCGC 2 cut(s) 889, 1628
Ksp22I TGATCA 2 cut(s) 12, 85
Kzo9I GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
LmnI GCTCC 6 cut(s) 120, 173, 233, 293, 1260, 1648
Lsp1109I GCAGC 3 cut(s) 308, 875, 1648
LweI GCATC 9 cut(s) 13, 388, 465, 659, 1224, 1317, 1342, 1507, 1639
MaeI CTAG 1 cut(s) 494
MaeII ACGT 1 cut(s) 1058
MaeIII GTNAC 8 cut(s) 587, 620, 748, 1054, 1059, 1385, 1579, 1703
MalI GATC 8 cut(s) 14, 87, 573, 849, 1044, 1106, 1421, 1537
MboI GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
MboII GAAGA 9 cut(s) 24, 551, 646, 1086, 1418, 1429, 1451, 1481, 1526
MflI RGATCY 1 cut(s) 1419
MhlI GDGCHC 3 cut(s) 117, 1033, 1265
MlyI GAGTC 6 cut(s) 28, 233, 551, 756, 1125, 1743
MmeI TCCRAC 1 cut(s) 271
Mph1103I ATGCAT 2 cut(s) 6, 674
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 6 cut(s) 405, 939, 1145, 1425, 1485, 1754
MslI CAYNNNNRTG 5 cut(s) 266, 629, 875, 1125, 1293
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 4 cut(s) 305, 343, 1258, 1400
Mva1269I GAATGC 1 cut(s) 1174
MvaI CCWGG 3 cut(s) 343, 1258, 1400
MvnI CGCG 3 cut(s) 29, 714, 891
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 305
NdeII GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
NlaIV GGNNCC 2 cut(s) 229, 1650
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 3 cut(s) 587, 620, 748
NsiI ATGCAT 2 cut(s) 6, 674
NspI RCATGY 3 cut(s) 168, 628, 880
NspV TTCGAA 1 cut(s) 419
PaeI GCATGC 1 cut(s) 168
PagI TCATGA 1 cut(s) 1737
PciI ACATGT 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PctI GAATGC 1 cut(s) 1174
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 6 cut(s) 505, 842, 1211, 1247, 1619, 1770
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 1256
PkrI GCNGC 3 cut(s) 298, 865, 1663
PleI GAGTC 6 cut(s) 27, 233, 550, 755, 1124, 1742
PpsI GAGTC 6 cut(s) 27, 233, 550, 755, 1124, 1742
PscI ACATGT 1 cut(s) 876
PshBI ATTAAT 1 cut(s) 1485
Psp124BI GAGCTC 2 cut(s) 117, 1033
Psp1406I AACGTT 1 cut(s) 1058
Psp6I CCWGG 3 cut(s) 341, 1256, 1398
PspGI CCWGG 3 cut(s) 341, 1256, 1398
PspN4I GGNNCC 2 cut(s) 229, 1650
PspPI GGNCC 1 cut(s) 1066
PsuI RGATCY 1 cut(s) 1419
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 2 cut(s) 881, 1746
RsaNI GTAC 2 cut(s) 880, 1745
RseI CAYNNNNRTG 5 cut(s) 266, 629, 875, 1125, 1293
SacI GAGCTC 2 cut(s) 117, 1033
SaqAI TTAA 6 cut(s) 405, 939, 1145, 1425, 1485, 1754
SatI GCNGC 3 cut(s) 297, 864, 1662
Sau3AI GATC 8 cut(s) 12, 85, 571, 847, 1042, 1104, 1419, 1535
Sau96I GGNCC 1 cut(s) 1066
SchI GAGTC 6 cut(s) 28, 233, 551, 756, 1125, 1743
ScrFI CCNGG 4 cut(s) 305, 343, 1258, 1400
SduI GDGCHC 3 cut(s) 117, 1033, 1265
SfaNI GCATC 9 cut(s) 13, 388, 465, 659, 1224, 1317, 1342, 1507, 1639
SfcI CTRYAG 1 cut(s) 1100
SfuI TTCGAA 1 cut(s) 419
SmiMI CAYNNNNRTG 5 cut(s) 266, 629, 875, 1125, 1293
SmlI CTYRAG 3 cut(s) 218, 1032, 1322
SmoI CTYRAG 3 cut(s) 218, 1032, 1322
SphI GCATGC 1 cut(s) 168
SsiI CCGC 5 cut(s) 440, 712, 891, 1077, 1355
SspMI CTAG 1 cut(s) 494
SstI GAGCTC 2 cut(s) 117, 1033
StyD4I CCNGG 4 cut(s) 303, 341, 1256, 1398
StyI CCWWGG 1 cut(s) 1623
TaaI ACNGT 3 cut(s) 179, 754, 1456
TaiI ACGT 1 cut(s) 1061
TaqI TCGA 4 cut(s) 419, 745, 924, 1512
TatI WGTACW 2 cut(s) 879, 1744
TfiI GAWTC 6 cut(s) 505, 842, 1211, 1247, 1619, 1770
Tru1I TTAA 6 cut(s) 405, 939, 1145, 1425, 1485, 1754
Tru9I TTAA 6 cut(s) 405, 939, 1145, 1425, 1485, 1754
TscAI CASTG 3 cut(s) 212, 438, 757
TseFI GTSAC 3 cut(s) 587, 620, 748
TseI GCWGC 3 cut(s) 296, 863, 1661
Tsp45I GTSAC 3 cut(s) 587, 620, 748
TspGWI ACGGA 4 cut(s) 232, 1223, 1614, 1782
TspRI CASTG 3 cut(s) 212, 438, 757
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 342
VspI ATTAAT 1 cut(s) 1485
XapI RAATTY 6 cut(s) 346, 810, 1147, 1221, 1563, 1779
XceI RCATGY 3 cut(s) 168, 628, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 1 cut(s) 494
Zsp2I ATGCAT 2 cut(s) 6, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.