Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Reverse (-)

55389276 .. 55389953

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATATTAATTGGTCTTTCCTCTCATGGTATTTGGATGCTTTGCTTTCTACGACAATTTAAGAGTTCGTACGGTGATCGGATTACTTGGCACTGCGTTTGGGCATCATCACCGTCCGATCTCATCCTCTATTTCAATCCAAGACTGCTGGTATGGGAACGAGAAGAGATAAAGAAAGATCGTAATTACCAGGTGATAAAGGTAGAGCATTCACATGAAGGAAGAGGAAAGAAGCCACCGGGGAAGTTGCTTCAGTCCGCTCATGCTTTGTGGAGAGAGAATTCCAGGTTCTTCAAGCATTGGGGAAGGTACATGCAGCCTCTAGTGTCCAAAGTTCCAGTAATGGTAGTAGAAGGGGACAATGAGATTGAGAAACGAGCTGGAAATCAAATGTTTGCTGCTGAAACAATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009846 GO:0009856 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0044237 GO:0044706 GO:0048856 GO:0051704 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

138

Amino Acids

16.17

Weight (kDa)

9.51

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	71, 311
AgsI	TTSAA	2 cut(s)	136, 295
AjnI	CCWGG	2 cut(s)	189, 284
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	316, 398
ApoI	RAATTY	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	86, 102, 205
BbvI	GCAGC	2 cut(s)	328, 385
BciT130I	CCWGG	2 cut(s)	191, 286
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	2 cut(s)	317, 399
BlsI	GCNGC	2 cut(s)	318, 400
Bme1390I	CCNGG	3 cut(s)	191, 240, 286
BmrFI	CCNGG	3 cut(s)	191, 240, 286
BmsI	GCATC	2 cut(s)	27, 113
BpuMI	CCSGG	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	191, 286
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	42, 123
BseNI	ACTGG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	328, 385
BsiSI	CCGG	1 cut(s)	239
BsiWI	CGTACG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	76, 118, 178
BspACI	CCGC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	3 cut(s)	76, 118, 178
Bst2UI	CCWGG	2 cut(s)	191, 286
Bst4CI	ACNGT	2 cut(s)	74, 114
Bst6I	CTCTTC	2 cut(s)	159, 217
BstF5I	GGATG	2 cut(s)	42, 123
BstKTI	GATC	3 cut(s)	79, 121, 181
BstMBI	GATC	3 cut(s)	76, 118, 178
BstNI	CCWGG	2 cut(s)	191, 286
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	189, 238, 284
BstV1I	GCAGC	2 cut(s)	328, 385
BtsCI	GGATG	2 cut(s)	42, 123
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	70, 310
CviAII	CATG	4 cut(s)	26, 215, 263, 313
CviJI	RGCY	3 cut(s)	235, 319, 380
CviKI_1	RGCY	3 cut(s)	235, 319, 380
CviQI	GTAC	2 cut(s)	70, 310
DpnI	GATC	3 cut(s)	78, 120, 180
DpnII	GATC	3 cut(s)	76, 118, 178
Eam1104I	CTCTTC	2 cut(s)	159, 217
EarI	CTCTTC	2 cut(s)	159, 217
Eco57I	CTGAAG	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	189, 284
FaeI	CATG	4 cut(s)	29, 218, 266, 316
FaiI	YATR	5 cut(s)	27, 154, 216, 264, 314
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	25, 214, 262, 312
Fnu4HI	GCNGC	2 cut(s)	317, 399
FokI	GGATG	2 cut(s)	49, 110
Fsp4HI	GCNGC	2 cut(s)	317, 399
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	2 cut(s)	317, 399
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	4 cut(s)	29, 218, 266, 316
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	3 cut(s)	86, 102, 205
Hpy188I	TCNGA	2 cut(s)	81, 118
HpyAV	CCTTC	3 cut(s)	212, 300, 347
HpyCH4III	ACNGT	2 cut(s)	74, 114
HpyCH4V	TGCA	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	29, 218, 266, 316
Kzo9I	GATC	3 cut(s)	76, 118, 178
LpnPI	CCDG	8 cut(s)	134, 176, 203, 252, 271, 298, 351, 366
Lsp1109I	GCAGC	2 cut(s)	328, 385
LweI	GCATC	2 cut(s)	27, 113
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	1 cut(s)	323
MalI	GATC	3 cut(s)	78, 120, 180
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	3 cut(s)	76, 118, 178
MboII	GAAGA	3 cut(s)	176, 234, 283
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	5 cut(s)	9, 56, 184, 280, 408
MnlI	CCTC	4 cut(s)	31, 137, 218, 330
MseI	TTAA	2 cut(s)	8, 60
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	3 cut(s)	191, 240, 286
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	191, 286
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	76, 118, 178
NlaIII	CATG	4 cut(s)	29, 218, 266, 316
NspI	RCATGY	1 cut(s)	316
PctI	GAATGC	1 cut(s)	208
Pfl23II	CGTACG	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	318, 400
PshBI	ATTAAT	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	189, 284
PspGI	CCWGG	2 cut(s)	189, 284
PspLI	CGTACG	1 cut(s)	69
RsaI	GTAC	2 cut(s)	71, 311
RsaNI	GTAC	2 cut(s)	70, 310
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	8, 60
SatI	GCNGC	2 cut(s)	317, 399
Sau3AI	GATC	3 cut(s)	76, 118, 178
ScrFI	CCNGG	3 cut(s)	191, 240, 286
SetI	ASST	5 cut(s)	195, 204, 290, 311, 382
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	27, 113
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	9, 56, 184, 280, 408
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	189, 238, 284
TaaI	ACNGT	2 cut(s)	74, 114
TasI	AATT	5 cut(s)	9, 56, 184, 280, 408
Tru1I	TTAA	2 cut(s)	8, 60
Tru9I	TTAA	2 cut(s)	8, 60
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	2 cut(s)	316, 398
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.