Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

79545120 .. 79549282

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG564000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACGTCAGTGACGCCTGATTCTAGGAAAGTTGGGACGGGGATGGCAGCATCCCCATCTCCTTTTCTCACGCCTCGGCCCGAAATGCGGCATGGTACTCTTGATTGGAATTCGAATCACAAGGATAAAGATAAGGAAGTTAATGTGCAAGTCGTGCTCAGACGCAGAGTCTATCATATGAAGTGTTTTCGTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGTTGGGGAAAACAAAATTTTTGATGCTAAAACTAGTTCAGCAAGCAAGAGGCGACATAGTACCAAGACTGTTAAAAGTGCAGAAATCATCATTTAACAGGGTCTGTGCTGCTGTGAATAATATTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

128

Amino Acids

14.69

Weight (kDa)

10.52

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	3 cut(s)	109, 235, 272
AcyI	GRCGYC	2 cut(s)	5, 14
AfaI	GTAC	2 cut(s)	97, 318
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	198
AhdI	GACNNNNNGTC	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	289
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	360
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	47, 365
ApoI	RAATTY	3 cut(s)	109, 235, 272
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	59, 352
BccI	CCATC	2 cut(s)	37, 64
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	2 cut(s)	24, 290
BisI	GCNGC	3 cut(s)	48, 89, 366
BlsI	GCNGC	3 cut(s)	49, 90, 367
BmeRI	GACNNNNNGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	59, 270
Bpu14I	TTCGAA	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	5, 14
BsaJI	CCNNGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	3 cut(s)	48, 50, 228
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	59, 352
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	74
BssNI	GRCGYC	2 cut(s)	5, 14
Bst4CI	ACNGT	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	5, 14
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	3 cut(s)	48, 50, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 154
BstV1I	GCAGC	2 cut(s)	59, 352
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	48, 50, 228
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	2 cut(s)	22, 171
Csp6I	GTAC	2 cut(s)	96, 317
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	2 cut(s)	79, 226
CviKI_1	RGCY	2 cut(s)	79, 226
CviQI	GTAC	2 cut(s)	96, 317
DdeI	CTNAG	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	167
Eam1105I	GACNNNNNGTC	1 cut(s)	167
EcoRI	GAATTC	2 cut(s)	109, 235
FaeI	CATG	1 cut(s)	95
FaiI	YATR	5 cut(s)	93, 177, 179, 241, 314
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	91
FauNDI	CATATG	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	48, 89, 366
FokI	GGATG	3 cut(s)	37, 55, 215
Fsp4HI	GCNGC	3 cut(s)	48, 89, 366
FspBI	CTAG	2 cut(s)	24, 290
GluI	GCNGC	3 cut(s)	48, 89, 366
HaeIII	GGCC	1 cut(s)	79
HgaI	GACGC	2 cut(s)	22, 171
Hin1I	GRCGYC	2 cut(s)	5, 14
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	3 cut(s)	20, 115, 168
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	2 cut(s)	101, 232
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	3 cut(s)	148, 249, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 154
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	2 cut(s)	5, 14
Hsp92II	CATG	1 cut(s)	95
LpnPI	CCDG	5 cut(s)	30, 236, 245, 269, 340
Lsp1109I	GCAGC	2 cut(s)	59, 352
LweI	GCATC	2 cut(s)	59, 270
MaeI	CTAG	2 cut(s)	24, 290
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	109, 235, 272
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	84, 228, 299
MseI	TTAA	3 cut(s)	141, 329, 351
MwoI	GCNNNNNNNGC	2 cut(s)	85, 154
NdeI	CATATG	1 cut(s)	177
NlaIII	CATG	1 cut(s)	95
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	20, 115
PkrI	GCNGC	3 cut(s)	49, 90, 367
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	360
RsaI	GTAC	2 cut(s)	97, 318
RsaNI	GTAC	2 cut(s)	96, 317
SaqAI	TTAA	3 cut(s)	141, 329, 351
SatI	GCNGC	3 cut(s)	48, 89, 366
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	2 cut(s)	8, 228
SfaNI	GCATC	2 cut(s)	59, 270
SfuI	TTCGAA	1 cut(s)	113
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	3 cut(s)	109, 235, 272
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	24, 290
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	113
TasI	AATT	3 cut(s)	109, 235, 272
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	20, 115
Tru1I	TTAA	3 cut(s)	141, 329, 351
Tru9I	TTAA	3 cut(s)	141, 329, 351
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	47, 365
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	194, 228
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	3 cut(s)	109, 235, 272
XspI	CTAG	2 cut(s)	24, 290
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.