Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

38086881 .. 38091403

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGACACTTGAAGTTAGGGAAAACAAAATTCTTGTTGCTAAAACTGGTTCGGCAAGCAAGAGGCGACGTAGTACCAAGACCGTTAAAAGTGCAGAAATCATCATTTAACGGTGGTATAGCGTGCAGGAGGTTCAAAAGTCATGTTATGCAGCCTCTAGTGTCCAAAGTTCCAGTAATGGTAGTAGAAGGGGACAATGAGATTGAGAAACAGGCTGGAAATCAAATGTTTGCTGCTGAAACAATTGGAAATTTCTTTGGCTACCGACCTTCAAGGCCTAGCGCCGGCGCAGCTTCGATTTGTTGCTTCGCCACCGTTGTCTTCATCGTCGGAGTGGGCGGAGCGAGCGACTACCTCGAGCTCTTCCTCGTCCTCTTCTTCATTGATTGGCTTTGCCGGATCCTAGATCTGTTGCTTCGCCGCCGGAGTCTTGATTTGTTGCTTCACCGCCGGATCCTCGATCCGTTGCTTCGCCACCGGAGCCTCGATTCATTGCTTCGCCACCGGATCCTAGATCTGTTGCTTCGCCGTTGGAGCCTTGATTCACTACTTCGCCGCCGAAGCCTTGATTCATTGTTTCCCCGCCGGAGCCTTGATTTGTTGCTTTGCTGCCGGATCCTCGCTTTGTTGCTTCGCCACCGAAATGGAGGTTTTGATTTTGGGGAGAAACGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009846 GO:0009856 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0032501 GO:0032502 GO:0042578 GO:0044237 GO:0044706 GO:0048856 GO:0051704 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

225

Amino Acids

25.76

Weight (kDa)

10.81

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	339, 421, 448, 556, 583
AclWI	GGATC	9 cut(s)	394, 407, 448, 455, 461, 502, 515, 610, 623
AcsI	RAATTY	2 cut(s)	29, 250
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	13, 136, 273
AluBI	AGCT	2 cut(s)	293, 361
AluI	AGCT	2 cut(s)	293, 361
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	9 cut(s)	394, 407, 448, 455, 461, 502, 515, 610, 623
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	4 cut(s)	151, 233, 290, 609
ApoI	RAATTY	2 cut(s)	29, 250
AspLEI	GCGC	2 cut(s)	284, 290
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	356
BamHI	GGATCC	4 cut(s)	399, 453, 507, 615
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	163, 220, 302, 596
BceAI	ACGGC	1 cut(s)	513
BfaI	CTAG	4 cut(s)	158, 279, 404, 512
BfoI	RGCGCY	1 cut(s)	285
BglII	AGATCT	2 cut(s)	406, 514
BisI	GCNGC	6 cut(s)	152, 234, 291, 421, 556, 610
BlsI	GCNGC	6 cut(s)	153, 235, 292, 422, 557, 611
BmeT110I	CYCGRG	1 cut(s)	356
BmiI	GGNNCC	7 cut(s)	401, 455, 482, 509, 536, 590, 617
BpiI	GAAGAC	1 cut(s)	313
BsaWI	WCCGGW	2 cut(s)	477, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	51, 173
Bse3DI	GCAATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	51, 173
BseXI	GCAGC	4 cut(s)	163, 220, 302, 596
BsgI	GTGCAG	2 cut(s)	113, 145
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	8 cut(s)	285, 397, 424, 451, 478, 505, 586, 613
BslFI	GGGAC	2 cut(s)	18, 206
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	18, 206
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
BspACI	CCGC	5 cut(s)	339, 421, 448, 556, 583
BspANI	GGCC	1 cut(s)	277
BspLI	GGNNCC	7 cut(s)	401, 455, 482, 509, 536, 590, 617
BspPI	GGATC	9 cut(s)	394, 407, 448, 455, 461, 502, 515, 610, 623
BspQI	GCTCTTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	51, 173
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
Bst4CI	ACNGT	3 cut(s)	84, 113, 316
Bst6I	CTCTTC	2 cut(s)	368, 380
BstC8I	GCNNGC	4 cut(s)	57, 124, 286, 346
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	2 cut(s)	284, 290
BstKTI	GATC	7 cut(s)	402, 409, 456, 463, 510, 517, 618
BstMBI	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 345, 480, 534, 561
BstV1I	GCAGC	4 cut(s)	163, 220, 302, 596
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	6 cut(s)	399, 406, 453, 507, 514, 615
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstYI	RGATCY	6 cut(s)	399, 406, 453, 507, 514, 615
BsuRI	GGCC	1 cut(s)	277
Cac8I	GCNNGC	4 cut(s)	57, 124, 286, 346
CfoI	GCGC	2 cut(s)	284, 290
Cfr10I	RCCGGY	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	1 cut(s)	74
DpnI	GATC	7 cut(s)	401, 408, 455, 462, 509, 516, 617
DpnII	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
Eam1104I	CTCTTC	2 cut(s)	368, 380
EarI	CTCTTC	2 cut(s)	368, 380
EciI	GGCGGA	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	1 cut(s)	146
FaiI	YATR	3 cut(s)	119, 144, 149
FaqI	GGGAC	2 cut(s)	18, 206
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	6 cut(s)	152, 234, 291, 421, 556, 610
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	152, 234, 291, 421, 556, 610
FspBI	CTAG	4 cut(s)	158, 279, 404, 512
GlaI	GCGC	2 cut(s)	283, 289
GluI	GCNGC	6 cut(s)	152, 234, 291, 421, 556, 610
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	8 cut(s)	285, 397, 424, 451, 478, 505, 586, 613
HhaI	GCGC	2 cut(s)	284, 290
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	2 cut(s)	282, 288
HinP1I	GCGC	2 cut(s)	282, 288
HinfI	GANTC	4 cut(s)	427, 488, 542, 569
HpaII	CCGG	8 cut(s)	285, 397, 424, 451, 478, 505, 586, 613
HphI	GGTGA	1 cut(s)	437
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	1 cut(s)	431
Hpy99I	CGWCG	2 cut(s)	71, 332
HpyAV	CCTTC	2 cut(s)	182, 279
HpyCH4III	ACNGT	3 cut(s)	84, 113, 316
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	94, 126, 151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 345, 480, 534, 561
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	2 cut(s)	282, 288
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	4 cut(s)	341, 480, 534, 588
Lsp1109I	GCAGC	4 cut(s)	163, 220, 302, 596
MaeI	CTAG	4 cut(s)	158, 279, 404, 512
MaeII	ACGT	1 cut(s)	69
MalI	GATC	7 cut(s)	401, 408, 455, 462, 509, 516, 617
MboI	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
MboII	GAAGA	4 cut(s)	313, 355, 367, 370
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	6 cut(s)	399, 406, 453, 507, 514, 615
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	29, 243, 250
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	310, 512
MreI	CGCCGGCG	1 cut(s)	284
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	2 cut(s)	86, 108
MslI	CAYNNNNRTG	1 cut(s)	642
MspI	CCGG	8 cut(s)	285, 397, 424, 451, 478, 505, 586, 613
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	5 cut(s)	290, 345, 480, 534, 561
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	7 cut(s)	401, 455, 482, 509, 536, 590, 617
PaeR7I	CTCGAG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	368
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	488, 542, 569
PkrI	GCNGC	6 cut(s)	153, 235, 292, 422, 557, 611
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	363
PspN4I	GGNNCC	7 cut(s)	401, 455, 482, 509, 536, 590, 617
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	6 cut(s)	399, 406, 453, 507, 514, 615
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	86, 108
SatI	GCNGC	6 cut(s)	152, 234, 291, 421, 556, 610
Sau3AI	GATC	7 cut(s)	399, 406, 453, 460, 507, 514, 615
SchI	GAGTC	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	7 cut(s)	72, 134, 271, 295, 357, 363, 652
Sfr274I	CTCGAG	1 cut(s)	356
SgrAI	CRCCGGYG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	29, 243, 250
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	5 cut(s)	339, 421, 448, 556, 583
SspMI	CTAG	4 cut(s)	158, 279, 404, 512
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	84, 113, 316
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	296, 357, 459, 486
TasI	AATT	3 cut(s)	29, 243, 250
TauI	GCSGC	2 cut(s)	423, 558
TfiI	GAWTC	3 cut(s)	488, 542, 569
Tru1I	TTAA	2 cut(s)	86, 108
Tru9I	TTAA	2 cut(s)	86, 108
TseI	GCWGC	4 cut(s)	151, 233, 290, 609
TspDTI	ATGAA	4 cut(s)	313, 370, 480, 561
TspGWI	ACGGA	1 cut(s)	453
XapI	RAATTY	2 cut(s)	29, 250
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	4 cut(s)	158, 279, 404, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.