Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Reverse (-)

33191162 .. 33192081

Gene Structure 920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATGCTCTTATCTCTGGTTATGGACATTTTTCACAAGCTATGGTGGACTCCAATGCGCATACAGAGTTTGATGGCTTCTCAGGGAATCAAAGGCCCTTCTTACAGATTCATCCATGGAAACGCCAAAGAAATCTCCAATATGGGAAAGGAAGCCATGAGCAGGCCAATTAATTTGTCACATGACATATTGTCTGCTGTTCAACCTCATTTTCACTCATGGAGCAAGATATATGGAACTGTTTTTCTGCAACGGCATGGTCCTCAAGCTCAGTTGGTGATTATGGAACCTGACTTGTGCAAACAGTTACTGAATAACAAAGAGAGAGCCTATGTGAAAAGAGAACCCTTCCCCTATGTAAGGAAGCTAGTTGGAGGTAGCGTTGGAATAACAGAGGATTCTGAAAAATGGGCAAAACTGAGAAAGCTGTCCAACTATGCCTTCCATGGAGAGAGCTTAAAAAGTAAGATTCCAAAAATGATAGCTGCGACTGAAACAATGCTACAAGGGTGGAAAAAGCATGAAGGCCAAGAGATTGAGGTGTACGAAGAATTTAGATTGTTGGGTTCGGATGTGATTTCCCGAGCAGCTACCTCGAAGGGAAGAACATTTTTGAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

207

Amino Acids

23.72

Weight (kDa)

9.64

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	70 - 197	6.6e-11	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	162, 360
AgsI	TTSAA	2 cut(s)	203, 616
AhdI	GACNNNNNGTC	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	7 cut(s)	40, 269, 367, 427, 456, 485, 590
AluI	AGCT	7 cut(s)	40, 269, 367, 427, 456, 485, 590
AlwNI	CAGNNNCTG	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	3 cut(s)	94, 164, 526
ApeKI	GCWGC	2 cut(s)	485, 587
ApoI	RAATTY	1 cut(s)	551
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	95, 260
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	472, 599
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	576, 610
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	486, 588
BlsI	GCNGC	2 cut(s)	487, 589
Bme18I	GGWCC	1 cut(s)	260
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	95, 260
BmiI	GGNNCC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	115, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 360
BseDI	CCNNGG	2 cut(s)	115, 445
BseGI	GGATG	2 cut(s)	111, 577
BseLI	CCNNNNNNNGG	2 cut(s)	162, 360
BseMII	CTCAG	3 cut(s)	95, 284, 410
BseXI	GCAGC	2 cut(s)	472, 599
BshFI	GGCC	3 cut(s)	96, 166, 528
BsiHKCI	CYCGRG	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	162, 360
BsnI	GGCC	3 cut(s)	96, 166, 528
BsoBI	CYCGRG	1 cut(s)	582
Bsp19I	CCATGG	2 cut(s)	115, 445
BspANI	GGCC	3 cut(s)	96, 166, 528
BspCNI	CTCAG	3 cut(s)	94, 283, 411
BspLI	GGNNCC	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	115, 445
BssT1I	CCWWGG	2 cut(s)	115, 445
Bst4CI	ACNGT	2 cut(s)	241, 306
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	81, 270, 419
BstDSI	CCRYGG	2 cut(s)	115, 445
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	111, 577
BstHHI	GCGC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	472, 599
BsuRI	GGCC	3 cut(s)	96, 166, 528
BtgI	CCRYGG	2 cut(s)	115, 445
BtsCI	GGATG	2 cut(s)	111, 577
Cac8I	GCNNGC	1 cut(s)	164
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	95, 260
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	7 cut(s)	116, 157, 182, 219, 257, 446, 521
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	3 cut(s)	81, 270, 419
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1105I	GACNNNNNGTC	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	115, 445
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	115, 445
ErhI	CCWWGG	2 cut(s)	115, 445
FaeI	CATG	7 cut(s)	119, 160, 185, 222, 260, 449, 524
FatI	CATG	7 cut(s)	115, 156, 181, 218, 256, 445, 520
Fnu4HI	GCNGC	2 cut(s)	486, 588
FokI	GGATG	2 cut(s)	98, 584
Fsp4HI	GCNGC	2 cut(s)	486, 588
FspAI	RTGCGCAY	1 cut(s)	59
FspBI	CTAG	1 cut(s)	368
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	486, 588
HaeIII	GGCC	3 cut(s)	96, 166, 528
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	7 cut(s)	119, 160, 185, 222, 260, 449, 524
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	5 cut(s)	49, 87, 108, 398, 469
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	48, 544
Hpy188I	TCNGA	2 cut(s)	403, 571
Hpy188III	TCNNGA	1 cut(s)	582
Hpy8I	GTNNAC	2 cut(s)	48, 544
HpyAV	CCTTC	5 cut(s)	108, 358, 451, 518, 592
HpyCH4III	ACNGT	2 cut(s)	241, 306
HpyCH4V	TGCA	2 cut(s)	250, 300
HpyF3I	CTNAG	3 cut(s)	81, 270, 419
Hsp92II	CATG	7 cut(s)	119, 160, 185, 222, 260, 449, 524
HspAI	GCGC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	4 cut(s)	2, 68, 148, 303
Lsp1109I	GCAGC	2 cut(s)	472, 599
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	177, 306
MboII	GAAGA	2 cut(s)	560, 615
MluCI	AATT	4 cut(s)	168, 172, 551, 616
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	3 cut(s)	352, 364, 456
MnlI	CCTC	6 cut(s)	216, 273, 368, 388, 532, 604
MseI	TTAA	2 cut(s)	171, 458
NcoI	CCATGG	2 cut(s)	115, 445
NlaIII	CATG	7 cut(s)	119, 160, 185, 222, 260, 449, 524
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	177
NsbI	TGCGCA	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	87, 108, 398, 469
PkrI	GCNGC	2 cut(s)	487, 589
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	95, 260
PstNI	CAGNNNCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	171, 458
SatI	GCNGC	2 cut(s)	486, 588
Sau96I	GGNCC	2 cut(s)	95, 260
SchI	GAGTC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	4 cut(s)	168, 172, 551, 616
SspMI	CTAG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	115, 445
TaaI	ACNGT	2 cut(s)	241, 306
TaqI	TCGA	1 cut(s)	596
TasI	AATT	4 cut(s)	168, 172, 551, 616
TfiI	GAWTC	4 cut(s)	87, 108, 398, 469
Tru1I	TTAA	2 cut(s)	171, 458
Tru9I	TTAA	2 cut(s)	171, 458
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	2 cut(s)	485, 587
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	100, 537
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	551
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.