Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

14593305 .. 14594507

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTACTGGAAGAATTTGGAGTCTTGTTACCAGGAAAGTGGACGTTGTAGTAGAGATGCCAAAGATCCAAGATGAGTTAATAGCACGAGAAATTGTTATTAATGATGCAGAGTCTTCTATTCGGTACAAGCTGACAAAACGCCAAACACAGGAGGAGATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATGAACCAAGCACATGTGTATATCTGGGCTTCGATGCAGATCCATCACTGAACATTGCTACTTGTATACGTGGACCAAGTGTGAGTTCTTTTATCCCCCCTTCCATATCTCTTGTCCCATCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

131

Amino Acids

14.33

Weight (kDa)

6.72

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	28 - 91	1e-27	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	334
AclWI	GGATC	3 cut(s)	61, 154, 302
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	173
Alw44I	GTGCAC	1 cut(s)	169
AlwI	GGATC	3 cut(s)	61, 154, 302
ApaLI	GTGCAC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	15
AseI	ATTAAT	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	196, 242
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	173
BccI	CCATC	3 cut(s)	221, 319, 394
BciT130I	CCWGG	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	3 cut(s)	48, 97, 292
BpiI	GAAGAC	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	13, 178
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	13, 178
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	66, 159, 307
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	3 cut(s)	61, 154, 302
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	13, 178
BssMI	GATC	3 cut(s)	66, 159, 307
BssNAI	GTATAC	1 cut(s)	335
BssSI	CACGAG	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	69, 162, 310
BstMBI	GATC	3 cut(s)	66, 159, 307
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	3 cut(s)	66, 159, 307
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	3 cut(s)	66, 159, 307
BstZ17I	GTATAC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	171, 314
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	5 cut(s)	5, 133, 238, 266, 297
CviKI_1	RGCY	5 cut(s)	5, 133, 238, 266, 297
CviQI	GTAC	1 cut(s)	127
DpnI	GATC	3 cut(s)	68, 161, 309
DpnII	GATC	3 cut(s)	66, 159, 307
Eco47I	GGWCC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	285
FaiI	YATR	7 cut(s)	244, 252, 283, 289, 335, 374, 394
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	334
FokI	GGATG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	22, 113
HphI	GGTGA	2 cut(s)	196, 242
Hpy166II	GTNNAC	5 cut(s)	43, 171, 222, 335, 341
Hpy8I	GTNNAC	5 cut(s)	43, 171, 222, 335, 341
HpyAV	CCTTC	1 cut(s)	378
HpyCH4IV	ACGT	2 cut(s)	45, 337
HpyCH4V	TGCA	4 cut(s)	110, 171, 260, 305
HpySE526I	ACGT	2 cut(s)	45, 337
Hsp92II	CATG	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	66, 159, 307
LpnPI	CCDG	6 cut(s)	19, 46, 137, 159, 246, 278
LweI	GCATC	3 cut(s)	48, 97, 292
MaeII	ACGT	2 cut(s)	45, 337
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	68, 161, 309
MboI	GATC	3 cut(s)	66, 159, 307
MboII	GAAGA	3 cut(s)	24, 108, 239
MflI	RGATCY	3 cut(s)	66, 159, 307
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	15, 93
MlyI	GAGTC	2 cut(s)	31, 122
MnlI	CCTC	1 cut(s)	148
MseI	TTAA	2 cut(s)	80, 102
MslI	CAYNNNNRTG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	66, 159, 307
NlaIII	CATG	1 cut(s)	285
NspI	RCATGY	1 cut(s)	285
PciI	ACATGT	1 cut(s)	281
PleI	GAGTC	2 cut(s)	30, 121
PpsI	GAGTC	2 cut(s)	30, 121
Ppu21I	YACGTR	1 cut(s)	338
PscI	ACATGT	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	66, 159, 307
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	80, 102
Sau3AI	GATC	3 cut(s)	66, 159, 307
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	2 cut(s)	31, 122
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	4 cut(s)	48, 135, 170, 340
SfaNI	GCATC	3 cut(s)	48, 97, 292
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	391
Sse9I	AATT	2 cut(s)	15, 93
StyD4I	CCNGG	1 cut(s)	32
TaiI	ACGT	2 cut(s)	48, 340
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	15, 93
Tru1I	TTAA	2 cut(s)	80, 102
Tru9I	TTAA	2 cut(s)	80, 102
TscAI	CASTG	2 cut(s)	178, 321
TspDTI	ATGAA	2 cut(s)	239, 285
TspRI	CASTG	2 cut(s)	178, 321
VneI	GTGCAC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.