Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008179

Physical Location & Seq

Genomic Coordinates Forward (+)

76699909 .. 76700710

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG537100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTCATAGAGTTCTCTACTCTGAAAGGTACCATCATGCCCATCTTCTTTAGGTTTTGGGAAGGACTGAAAGATGACGTCAGTGAAGTTGGGACGGGGATGGCAGCATTCCCATCTCCTTTTCTCACACCTCGGCCCGAAAAGAGGCGTGGTACTCTTGATTGGAATTCAAATCACAAGGATAAGGATAAGGAAGTTAATGTGCAAATTGTGCTCAGATGCAGAGTCTATCATATGAAGGGTTTTCCTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAACAACCAGGTATTGTTCTCTCTATTCCTTGATGTACATTTGTATTATTTTCGAGTGTTTTGTTATAGTAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

127

Amino Acids

14.99

Weight (kDa)

9.07

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008179)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057801 RchiOBHm_Chr6g0283871
rosa_laevigata	RLG00000012799 RLG00000033115
rosa_multiflora	Rmu_sc0000389.1_g000028 Rmu_sc0012031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102430 Rroxscaffold_2G00122340 Rroxscaffold_4G00314170 Rroxscaffold_5G00350930 Rroxscaffold_5G00351570 Rroxscaffold_7G00192550 Rroxscaffold_7G00192570 Rroxscaffold_7G00196140
rosa_rugosa	Rorug02G0298400 Rorug04G0001600 Rorug05G0156500 Rorug06G0014900
rosa_samantha	Rh2BG527900 Rh2DG537100 Rh3BG272400 Rh5BG541400 Rh5CG564000 Rh6CG129900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	166, 292
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	31, 154, 342
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	171, 255
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	166, 292
Asp718I	GGTACC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	4 cut(s)	41, 50, 94, 121
BciT130I	CCWGG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	105, 285
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	340
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	314
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstAUI	TGTACA	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	105, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	105, 285
BtsIMutI	CAGTG	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	135
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	30, 153, 341
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	2 cut(s)	136, 283
CviKI_1	RGCY	2 cut(s)	136, 283
CviQI	GTAC	3 cut(s)	30, 153, 341
DdeI	CTNAG	1 cut(s)	215
EcoRI	GAATTC	2 cut(s)	166, 292
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	8, 38, 234, 236, 298, 372
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	112, 272
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	2 cut(s)	24, 218
Hpy188III	TCNNGA	2 cut(s)	158, 289
HpyAV	CCTTC	2 cut(s)	56, 232
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	205, 222, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	293, 299, 302, 326
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	209
MabI	ACCWGGT	1 cut(s)	312
MaeII	ACGT	1 cut(s)	78
MboII	GAAGA	2 cut(s)	37, 263
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	3 cut(s)	166, 207, 292
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	3 cut(s)	138, 141, 285
MseI	TTAA	2 cut(s)	198, 382
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeI	CATATG	1 cut(s)	234
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	112
PctI	GAATGC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	135
RsaI	GTAC	3 cut(s)	31, 154, 342
RsaNI	GTAC	3 cut(s)	30, 153, 341
SaqAI	TTAA	2 cut(s)	198, 382
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	6 cut(s)	31, 56, 81, 133, 285, 318
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	209
Sse9I	AATT	3 cut(s)	166, 207, 292
StyD4I	CCNGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	166, 207, 292
TatI	WGTACW	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	198, 382
Tru9I	TTAA	2 cut(s)	198, 382
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	251, 285
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	2 cut(s)	166, 292
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.