Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Reverse (-)

33300152 .. 33309382

Gene Structure 9231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3546 bp

ATGGCTTGTTCATCCGAAAGATGGATTGATCGGTTGCAATTCTCCTCATTGTTTGCGCCTCCCCCGCAAGACGCTCCAAGACGAAAGGCTCAAATCACGGCCTATGTGGAGTACTTTGGTCAGTTTACATCAGAACAGTTTCCGGAGGATATTTCTGAGCTGATCCGTAACCGCTACCCATCTGAGGTGAAGCGTCTCTTTGACGATGTGTTAGCTATGTTTGTGCTCCATCATCCTGAGCATGGGCATGCTGTTGTCCTTCCCATCATTTCATGTATCATTGATGGCACTCTGCCCTATGAAAGGACTAGTCCACCATTTGCTTCTTTCATATCCTTAGTCTGCCCAAGCAGTGAGAATGAGTACTCTGAGCAGTGGGCCCTGGCATGTGGGGAGATTTTACGAATCTTAACTCATTACAATCGTCCAATATACAAGGCAGAACAACAGAGTTGTGAAACTGAAAGAAGCAGTAGTGGCAGCCATGCTACAACAAGCGACTCTGTTGATAGTGAATCCAGCCATATACCCTTAGTACAGCAAGAGAGGAAACCTATAAGACCTTTGTCTCCCTGGATCACTGATATATTGCTTGCTGCACCTCTGGGTATCAGAAGTGATTACTTCCGCTGGTGCAGTGGAGTTATGGGGAAATATGCTGCGGGAGAACTGAAGCCACCATCAACTGCTTCTTCTCGTGCATCTGGAAAGCATCCTCAACTCATGCCATCGACTCCAAGGTGGGCTGTTGCAAATGGTGCTGGGGTCATATTAAGTGTTTGTGATGAGGAAGTTTCTCGTTATGAAACTGTTACATTAACAGCAGTAGCTGTCCCTGCCCTTCTACTTCCTCCTCCAACAACCGCTTTGGATGAGCATCTAGTGGCAGGGCTACCAGCTCTCGAGCCGTATGCACGTTTATTTCACAGGTATTATGCTATTGCTACTCCAAGTGCTACCCAAAGACTTCTTCTTGGACTTCTAGAAGCACCACCATCATGGGCTCCCGATGCACTTGATGCAGCCGTACAGCTTGTGGAACTTCTTCGCGCTGCTGAAGATTATGCATCTGGAATAAGGCTTCCAAGGAACTGGATGCATTTGCATTTCTTGCGTGCAATTGGGACTGCAATGTCCATGAGAGCTGGTATAGCAGCTGATGCTGCAGCAGCTTTACTTTTCCGGATACTCTCACAACCTGCATTGCTTTTTCCTCCACTAAGACAAGTTGAGGGAGTTGATGTTCAACATGAGCCTTTGGGTGGCTACGTCTCAAGCTACAGGAAGCAGATAGAAGTTCCTGTGGCTGAAGCAACAATTGAAGCTACTGCCCAAGGGATTGCTTCGATGCTCTGTGCCCATGGACCTGAGGTTGAATGGAGAATCTGTACCATATGGGAAGCTGCCTATGGTCTAATTCCTTTAAGCTCCTCGGCAGTTGACCTTCCTGAGATCATTGTTGCCACTCCATTACAGCCTCCAATATTATCCTGGAATCTGTATATACCCCTCCTTAAGGTCTTGGAATATCTTCCTCGTGGAAGTCCGTCTGAAGCATGTCTTATGAAGATATTTGTTGCCACAGTTGAAGCGATTCTTCAAAGGACATTTCCACCTGAGTCCTCAAGAGAGCAGAACAGAAAAACAAGATACCTTTTCGGCATAGGGTCTGCCTCAAAAAACCTGGCTGTGGCAGAGCTTCGGACAATGGTTCATTCACTATTCTTAGAATCATGTGCATCTGTAGAGCTTGCTTCACGTCTACTGTTTGTTGTGCTAACTGTATGTGTTAGTCATGAAGCTCAGTCCAGCGGGAGTAAGAAAGCACGAGTTGAAGAAAGCTACCCACTTGATGAATGCATTGAGGAATCACGAGAATTGTCTGAAAAGCGGAGAGACAGGACAAGTAAAAAAACCAAAAAACAAGGACCTGTAGCAGCATTTGACTCCTATGTTCTAGCTGCTGTTTGTGCTCTTGCCTGTGAGCTTCAGTTGTTCCCTTTGGTTTCAAGGGGAAGCAACCATTCACATGCTAAAGATGCAAAACATATGGCAAAGCCTGCCAAACCAATTGGACCTGCTAGTTCTTACAAAAAAATAAATGGATCTACTAATGAGTTTCAAATTAGTGTTGACTCAGCAATTTGCCACACCCGCAGAATATTGGCCATTTTGGAGGCACTGTTTTTGCTGAAACCATCTTCTGTTGGCACCTCCTGGAGTTACAGTTCAAATGAGATAGTTGCAGCAGCTATGGTTGCGGCTCATGTATCTGAATTATTTAGATGGTCAAAGGCTTGTATGCATGCACTCTCTGTCTTGATGCGCTGCAAGTGGGATAATGAAATTTCCTCCAGAGCATCATCACTGTACAACCTCATAGATATTCACAGTAAGGCTGTTGCATCTATTGTTAACAAGGCTGAACCACTGGAAGCACACTTGATGCAAGTGCCAATTTGGAGGGATTCTTTTGTGTGTTCTGAAGGTAGAAAGCGAAGTCATTGTGAAAAGAGTAAATGCATTAATATAGGGCAGTCCTCTGGCTCGCAATTTGAAAATTCAGTGCATTCAGAAACTAGAATCAAATCTGAGAGTGCGTCCTGTTCTAATGGGGGTTCTGGAAATACATTTGGTAAAGGTGTTGCAAATTTTCCGTTAGATGCTTCGGAATTGGCCAACTTCCTTACTATGGACAGGCATATAGGATTTAGTTGCAGTGCACAGGTTCTTCTAAGATCGGTACTGACAGAGAAACAAGAGCTATGTTTCTCAGTTGTCTCACTGTTGTGGCACAAATTACTGGCGTCTCCTGAAACCCAACCTACTGCAGAAAGCACTTCTGCTCAACAAGGATGGCGGCAGGTCGTTGATGCATTATGCAACGTTGTATCAGCAACACCAACGAAAGCAGCCACAGCAGTTGTTCTACAGGCGGAGAGGGAATTGCAGCCTTGGATTGCCAAAGATGATGATCAAGGTCAGAAGATGTGGAGAATCAACCAGAGGATTGTGAAATTGATTGTAGAGTTGATGAGAATTCATGATAGCCCAGAATCATTGGTAATTTTGTCTAGCGCCTCGGATCTACTTCTGCGTGCCACTGATGGGATGCTTGTTGATGGAGAAGCTTGCACTTTACCCCAGCTGGAGCTACTGGAAGCAACTGCTAGAGCAGTTAAGCCTGTGCTGGAGTGGGGAGAATCTGGGCTTGCAGTTGCAGATGGCCTTTCGAACCTGTTAAAGTGTCGTCTGTCTGCTACTATCCGATGCCTTTCTCATCCTAGTGCACATGTTCGAGCTTTGAGCGTATCAGTTCTTCGTGATATTTTGCAAGCCAGTTCAATTAGACCCAACCCTAATCCAGTGCAAATAAATGGTATCCATGGTCCTTCCTACAAGTATTTTAACTTAGATGTTATTGATTGGCAAGCTGATATTGAAAAGTGCTTGACATGGGAAGCTCATAGCCGACTTGCGACCGGAATGCCTATTAAATTTCTGGATACTGCTGCCAAGGAATTGGGTTGTACTATTTCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1182

Amino Acids

129.63

Weight (kDa)

6.45

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1132
Acc36I	ACCTGC	3 cut(s)	1207, 2086, 2854
AccB1I	GGYRCC	1 cut(s)	2210
AccI	GTMKAC	1 cut(s)	1762
AccII	CGCG	1 cut(s)	1050
AccIII	TCCGGA	2 cut(s)	142, 1182
AclI	AACGTT	1 cut(s)	2886
AclWI	GGATC	4 cut(s)	157, 584, 2113, 3093
AcoI	YGGCCR	2 cut(s)	2166, 2676
AcsI	RAATTY	5 cut(s)	2346, 2560, 2650, 3039, 3497
AcuI	CTGAAG	6 cut(s)	692, 1077, 1329, 1572, 1973, 2505
AcyI	GRCGYC	1 cut(s)	2807
AfaI	GTAC	8 cut(s)	113, 365, 537, 1029, 1390, 2372, 2745, 3532
AfiI	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 303, 1262, 1516, 1690, 2692, 3108
AflII	CTTAAG	1 cut(s)	1514
AflIII	ACRYGT	1 cut(s)	3292
AhlI	ACTAGT	1 cut(s)	308
AjiI	CACGTC	1 cut(s)	1760
AjnI	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AleI	CACNNNNGTG	1 cut(s)	2788
AloI	GAACNNNNNNTCC	4 cut(s)	1227, 1259, 2212, 2244
Alw21I	GWGCWC	4 cut(s)	228, 1975, 2725, 3292
Alw26I	GTCTC	6 cut(s)	200, 573, 1276, 1890, 2785, 2814
Alw44I	GTGCAC	2 cut(s)	2721, 3288
AlwI	GGATC	4 cut(s)	157, 584, 2113, 3093
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	902
Aor13HI	TCCGGA	2 cut(s)	142, 1182
AoxI	GGCC	5 cut(s)	99, 378, 2166, 2676, 3226
ApaI	GGGCCC	1 cut(s)	382
ApaLI	GTGCAC	2 cut(s)	2721, 3288
ApoI	RAATTY	5 cut(s)	2346, 2560, 2650, 3039, 3497
AseI	ATTAAT	1 cut(s)	2526
Asp700I	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
AspLEI	GCGC	4 cut(s)	58, 1052, 2328, 3080
AspS9I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3389
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	3233
AvaI	CYCGRG	1 cut(s)	902
AvaII	GGWCC	4 cut(s)	1364, 1928, 2075, 3389
AxyI	CCTNAGG	1 cut(s)	1368
BaeGI	GKGCMC	4 cut(s)	382, 1360, 2725, 3292
BalI	TGGCCA	2 cut(s)	2168, 2678
BanI	GGYRCC	1 cut(s)	2210
BanII	GRGCYC	2 cut(s)	382, 1006
BarI	GAAGNNNNNNTAC	2 cut(s)	3303, 3335
BauI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
Bbv12I	GWGCWC	4 cut(s)	228, 1975, 2725, 3292
BceAI	ACGGC	3 cut(s)	114, 892, 1010
BcgI	CGANNNNNNTGC	4 cut(s)	893, 927, 3469, 3503
BciT130I	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BciVI	GTATCC	3 cut(s)	1179, 3392, 3499
BclI	TGATCA	1 cut(s)	2974
BcoDI	GTCTC	6 cut(s)	200, 573, 1276, 1890, 2785, 2814
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	9 cut(s)	309, 881, 983, 1958, 2082, 2580, 3075, 3171, 3285
BfmI	CTRYAG	6 cut(s)	1164, 1279, 1743, 1932, 2829, 2930
BfoI	RGCGCY	1 cut(s)	3081
BfrI	CTTAAG	1 cut(s)	1514
BfuAI	ACCTGC	3 cut(s)	1207, 2086, 2854
BfuI	GTATCC	3 cut(s)	1179, 3392, 3499
BmcAI	AGTACT	2 cut(s)	113, 365
Bme1390I	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
Bme18I	GGWCC	4 cut(s)	1364, 1928, 2075, 3389
BmeT110I	CYCGRG	1 cut(s)	902
BmgBI	CACGTC	1 cut(s)	1760
BmgT120I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3389
BmiI	GGNNCC	3 cut(s)	380, 1005, 2212
BmrFI	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
BoxI	GACNNNNGTC	1 cut(s)	565
BpmI	CTGGAG	4 cut(s)	2239, 2338, 3170, 3212
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	3233
BpuEI	CTTGAG	2 cut(s)	1258, 1609
BsaBI	GATNNNNATC	2 cut(s)	876, 2973
BsaHI	GRCGYC	1 cut(s)	2807
BsaWI	WCCGGW	3 cut(s)	142, 1182, 3482
BsaXI	ACNNNNNCTCC	8 cut(s)	1227, 1257, 1372, 1402, 2168, 2198, 2212, 2242
Bsc4I	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 303, 1262, 1516, 1690, 2692, 3108
Bse1I	ACTGG	6 cut(s)	1097, 2436, 2808, 3162, 3339, 3365
Bse21I	CCTNAGG	1 cut(s)	1368
Bse3DI	GCAATG	2 cut(s)	1137, 1202
Bse8I	GATNNNNATC	2 cut(s)	876, 2973
BseAI	TCCGGA	2 cut(s)	142, 1182
BseBI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BseGI	GGATG	8 cut(s)	11, 232, 712, 877, 1101, 2861, 3117, 3280
BseJI	GATNNNNATC	2 cut(s)	876, 2973
BseLI	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 303, 1262, 1516, 1690, 2692, 3108
BseMI	GCAATG	2 cut(s)	1137, 1202
BseNI	ACTGG	6 cut(s)	1097, 2436, 2808, 3162, 3339, 3365
BseRI	GAGGAG	3 cut(s)	34, 843, 1420
BseSI	GKGCMC	4 cut(s)	382, 1360, 2725, 3292
BseYI	CCCAGC	2 cut(s)	761, 3144
BsgI	GTGCAG	2 cut(s)	582, 655
Bsh1236I	CGCG	1 cut(s)	1050
Bsh1285I	CGRYCG	1 cut(s)	3483
BshFI	GGCC	5 cut(s)	101, 380, 2168, 2678, 3228
BshNI	GGYRCC	1 cut(s)	2210
BsiEI	CGRYCG	1 cut(s)	3483
BsiHKAI	GWGCWC	4 cut(s)	228, 1975, 2725, 3292
BsiHKCI	CYCGRG	1 cut(s)	902
BsiSI	CCGG	3 cut(s)	143, 1183, 3483
BslFI	GGGAC	2 cut(s)	818, 1138
BslI	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 303, 1262, 1516, 1690, 2692, 3108
BsmAI	GTCTC	6 cut(s)	200, 573, 1276, 1890, 2785, 2814
BsmBI	CGTCTC	3 cut(s)	200, 1276, 2814
BsmFI	GGGAC	2 cut(s)	818, 1138
BsmI	GAATGC	3 cut(s)	1862, 2569, 3492
BsnI	GGCC	5 cut(s)	101, 380, 2168, 2678, 3228
BsoBI	CYCGRG	1 cut(s)	902
Bsp119I	TTCGAA	1 cut(s)	3233
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	7 cut(s)	228, 382, 1006, 1360, 1975, 2725, 3292
Bsp13I	TCCGGA	2 cut(s)	142, 1182
Bsp1407I	TGTACA	1 cut(s)	2370
Bsp143I	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
Bsp19I	CCATGG	2 cut(s)	1360, 3385
BspANI	GGCC	5 cut(s)	101, 380, 2168, 2678, 3228
BspEI	TCCGGA	2 cut(s)	142, 1182
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	2 cut(s)	1795, 3043
BspLI	GGNNCC	3 cut(s)	380, 1005, 2212
BspMAI	CTGCAG	2 cut(s)	1168, 2833
BspMI	ACCTGC	3 cut(s)	1207, 2086, 2854
BspPI	GGATC	4 cut(s)	157, 584, 2113, 3093
BspT104I	TTCGAA	1 cut(s)	3233
BspT107I	GGYRCC	1 cut(s)	2210
BspTI	CTTAAG	1 cut(s)	1514
BsrDI	GCAATG	2 cut(s)	1137, 1202
BsrGI	TGTACA	1 cut(s)	2370
BsrI	ACTGG	6 cut(s)	1097, 2436, 2808, 3162, 3339, 3365
BssMI	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
BssNI	GRCGYC	1 cut(s)	2807
BssSI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
BssT1I	CCWWGG	7 cut(s)	737, 1085, 1333, 1360, 2954, 3385, 3516
Bst2BI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
Bst2UI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BstACI	GRCGYC	1 cut(s)	2807
BstAFI	CTTAAG	1 cut(s)	1514
BstAPI	GCANNNNNTGC	5 cut(s)	758, 1019, 1111, 1160, 2060
BstAUI	TGTACA	1 cut(s)	2370
BstBI	TTCGAA	1 cut(s)	3233
BstDSI	CCRYGG	2 cut(s)	1360, 3385
BstENI	CCTNNNNNAGG	2 cut(s)	301, 1514
BstF5I	GGATG	8 cut(s)	11, 232, 712, 877, 1101, 2861, 3117, 3280
BstFNI	CGCG	1 cut(s)	1050
BstH2I	RGCGCY	1 cut(s)	3081
BstHHI	GCGC	4 cut(s)	58, 1052, 2328, 3080
BstKTI	GATC	8 cut(s)	31, 165, 579, 1455, 2108, 2741, 2977, 3088
BstMAI	GTCTC	6 cut(s)	200, 573, 1276, 1890, 2785, 2814
BstMBI	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
BstMCI	CGRYCG	1 cut(s)	3483
BstNI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BstNSI	RCATGY	6 cut(s)	251, 390, 1560, 2033, 2309, 3296
BstPAI	GACNNNNGTC	1 cut(s)	565
BstSCI	CCNGG	5 cut(s)	381, 572, 1490, 1683, 2216
BstSFI	CTRYAG	6 cut(s)	1164, 1279, 1743, 1932, 2829, 2930
BstSLI	GKGCMC	4 cut(s)	382, 1360, 2725, 3292
BstUI	CGCG	1 cut(s)	1050
BstX2I	RGATCY	2 cut(s)	2105, 3085
BstXI	CCANNNNNNTGG	3 cut(s)	999, 1092, 3523
BstYI	RGATCY	2 cut(s)	2105, 3085
Bsu36I	CCTNAGG	1 cut(s)	1368
BsuI	GTATCC	3 cut(s)	1179, 3392, 3499
BsuRI	GGCC	5 cut(s)	101, 380, 2168, 2678, 3228
BtgI	CCRYGG	2 cut(s)	1360, 3385
BtrI	CACGTC	1 cut(s)	1760
BtsCI	GGATG	8 cut(s)	11, 232, 712, 877, 1101, 2861, 3117, 3280
BtsI	GCAGTG	4 cut(s)	358, 380, 643, 2725
BveI	ACCTGC	3 cut(s)	1207, 2086, 2854
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	2 cut(s)	1795, 3043
CfoI	GCGC	4 cut(s)	58, 1052, 2328, 3080
Cfr13I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3389
CseI	GACGC	4 cut(s)	80, 182, 2589, 2796
Csp6I	GTAC	8 cut(s)	112, 364, 536, 1028, 1389, 2371, 2744, 3531
CspCI	CAANNNNNGTGG	2 cut(s)	2905, 2940
CviQI	GTAC	8 cut(s)	112, 364, 536, 1028, 1389, 2371, 2744, 3531
DpnI	GATC	8 cut(s)	30, 164, 578, 1454, 2107, 2740, 2976, 3087
DpnII	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
DrdI	GACNNNNNNGTC	1 cut(s)	1132
DseDI	GACNNNNNNGTC	1 cut(s)	1132
EaeI	YGGCCR	2 cut(s)	2166, 2676
EciI	GGCGGA	1 cut(s)	2951
Eco130I	CCWWGG	7 cut(s)	737, 1085, 1333, 1360, 2954, 3385, 3516
Eco24I	GRGCYC	2 cut(s)	382, 1006
Eco47I	GGWCC	4 cut(s)	1364, 1928, 2075, 3389
Eco57I	CTGAAG	6 cut(s)	692, 1077, 1329, 1572, 1973, 2505
Eco81I	CCTNAGG	1 cut(s)	1368
Eco88I	CYCGRG	1 cut(s)	902
EcoNI	CCTNNNNNAGG	2 cut(s)	301, 1514
EcoO109I	RGGNCCY	2 cut(s)	379, 1928
EcoRI	GAATTC	1 cut(s)	3039
EcoRII	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
EcoT14I	CCWWGG	7 cut(s)	737, 1085, 1333, 1360, 2954, 3385, 3516
EcoT22I	ATGCAT	6 cut(s)	1069, 1101, 1862, 2307, 2525, 2878
EcoT38I	GRGCYC	2 cut(s)	382, 1006
ErhI	CCWWGG	7 cut(s)	737, 1085, 1333, 1360, 2954, 3385, 3516
Esp3I	CGTCTC	3 cut(s)	200, 1276, 2814
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 1545, 1577, 1581, 1613
FaqI	GGGAC	2 cut(s)	818, 1138
FauI	CCCGC	4 cut(s)	72, 655, 1805, 2162
FauNDI	CATATG	2 cut(s)	1394, 2049
FbaI	TGATCA	1 cut(s)	2974
FblI	GTMKAC	1 cut(s)	1762
FokI	GGATG	7 cut(s)	219, 699, 884, 1108, 2868, 3124, 3267
FriOI	GRGCYC	2 cut(s)	382, 1006
FspBI	CTAG	9 cut(s)	309, 881, 983, 1958, 2082, 2580, 3075, 3171, 3285
GlaI	GCGC	4 cut(s)	57, 1051, 2327, 3079
GsaI	CCCAGC	2 cut(s)	765, 3148
GsuI	CTGGAG	4 cut(s)	2239, 2338, 3170, 3212
HaeII	RGCGCY	1 cut(s)	3081
HaeIII	GGCC	5 cut(s)	101, 380, 2168, 2678, 3228
HapII	CCGG	3 cut(s)	143, 1183, 3483
HgaI	GACGC	4 cut(s)	80, 182, 2589, 2796
HhaI	GCGC	4 cut(s)	58, 1052, 2328, 3080
Hin1I	GRCGYC	1 cut(s)	2807
Hin6I	GCGC	4 cut(s)	56, 1050, 2326, 3078
HinP1I	GCGC	4 cut(s)	56, 1050, 2326, 3078
HincII	GTYRAC	3 cut(s)	1441, 2134, 2416
HindII	GTYRAC	3 cut(s)	1441, 2134, 2416
HindIII	AAGCTT	1 cut(s)	3129
HpaI	GTTAAC	1 cut(s)	2416
HpaII	CCGG	3 cut(s)	143, 1183, 3483
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	8 cut(s)	126, 314, 1441, 1763, 2134, 2416, 2723, 3290
Hpy8I	GTNNAC	8 cut(s)	126, 314, 1441, 1763, 2134, 2416, 2723, 3290
HpyAV	CCTTC	5 cut(s)	269, 851, 1454, 2480, 3402
HpyCH4IV	ACGT	4 cut(s)	916, 1269, 1759, 2886
HpySE526I	ACGT	4 cut(s)	916, 1269, 1759, 2886
Hsp92I	GRCGYC	1 cut(s)	2807
HspAI	GCGC	4 cut(s)	56, 1050, 2326, 3078
Kpn2I	TCCGGA	2 cut(s)	142, 1182
Ksp22I	TGATCA	1 cut(s)	2974
KspAI	GTTAAC	1 cut(s)	2416
Kzo9I	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
LmnI	GCTCC	5 cut(s)	79, 231, 1009, 1433, 3151
MaeI	CTAG	9 cut(s)	309, 881, 983, 1958, 2082, 2580, 3075, 3171, 3285
MaeII	ACGT	4 cut(s)	916, 1269, 1759, 2886
MaeIII	GTNAC	3 cut(s)	167, 811, 2222
MalI	GATC	8 cut(s)	30, 164, 578, 1454, 2107, 2740, 2976, 3087
MboI	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
MfeI	CAATTG	3 cut(s)	1119, 1317, 2070
MflI	RGATCY	2 cut(s)	2105, 3085
MhlI	GDGCHC	7 cut(s)	228, 382, 1006, 1360, 1975, 2725, 3292
MlsI	TGGCCA	2 cut(s)	2168, 2678
MluNI	TGGCCA	2 cut(s)	2168, 2678
MlyI	GAGTC	5 cut(s)	494, 727, 1628, 1940, 2129
MmeI	TCCRAC	1 cut(s)	881
Mox20I	TGGCCA	2 cut(s)	2168, 2678
Mph1103I	ATGCAT	6 cut(s)	1069, 1101, 1862, 2307, 2525, 2878
MroI	TCCGGA	2 cut(s)	142, 1182
MroXI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
MscI	TGGCCA	2 cut(s)	2168, 2678
MslI	CAYNNNNRTG	5 cut(s)	246, 997, 2028, 2788, 3285
Msp20I	TGGCCA	2 cut(s)	2168, 2678
MspA1I	CMGCKG	4 cut(s)	630, 1157, 1812, 3148
MspCI	CTTAAG	1 cut(s)	1514
MspI	CCGG	3 cut(s)	143, 1183, 3483
MspR9I	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
MunI	CAATTG	3 cut(s)	1119, 1317, 2070
Mva1269I	GAATGC	3 cut(s)	1862, 2569, 3492
MvaI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
MvnI	CGCG	1 cut(s)	1050
NcoI	CCATGG	2 cut(s)	1360, 3385
NdeI	CATATG	2 cut(s)	1394, 2049
NdeII	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
NlaIV	GGNNCC	3 cut(s)	380, 1005, 2212
NmeAIII	GCCGAG	1 cut(s)	1412
NsiI	ATGCAT	6 cut(s)	1069, 1101, 1862, 2307, 2525, 2878
NspI	RCATGY	6 cut(s)	251, 390, 1560, 2033, 2309, 3296
NspV	TTCGAA	1 cut(s)	3233
OliI	CACNNNNGTG	1 cut(s)	2788
PaeI	GCATGC	2 cut(s)	251, 2309
PaeR7I	CTCGAG	1 cut(s)	902
PagI	TCATGA	2 cut(s)	1795, 3043
PciI	ACATGT	1 cut(s)	3292
PctI	GAATGC	3 cut(s)	1862, 2569, 3492
PdmI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
PfoI	TCCNGGA	2 cut(s)	1490, 2216
PleI	GAGTC	5 cut(s)	494, 727, 1627, 1940, 2129
PpsI	GAGTC	5 cut(s)	494, 727, 1627, 1940, 2129
PpuMI	RGGWCCY	1 cut(s)	1928
PscI	ACATGT	1 cut(s)	3292
PshAI	GACNNNNGTC	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	2526
Psp1406I	AACGTT	1 cut(s)	2886
Psp5II	RGGWCCY	1 cut(s)	1928
Psp6I	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
PspFI	CCCAGC	2 cut(s)	761, 3144
PspGI	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
PspN4I	GGNNCC	3 cut(s)	380, 1005, 2212
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3389
PspPPI	RGGWCCY	1 cut(s)	1928
PstI	CTGCAG	2 cut(s)	1168, 2833
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	2105, 3085
PvuII	CAGCTG	2 cut(s)	1157, 3148
RsaI	GTAC	8 cut(s)	113, 365, 537, 1029, 1390, 2372, 2745, 3532
RsaNI	GTAC	8 cut(s)	112, 364, 536, 1028, 1389, 2371, 2744, 3531
RseI	CAYNNNNRTG	5 cut(s)	246, 997, 2028, 2788, 3285
Sau3AI	GATC	8 cut(s)	28, 162, 576, 1452, 2105, 2738, 2974, 3085
Sau96I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3389
ScaI	AGTACT	2 cut(s)	113, 365
SchI	GAGTC	5 cut(s)	494, 727, 1628, 1940, 2129
ScrFI	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
SduI	GDGCHC	7 cut(s)	228, 382, 1006, 1360, 1975, 2725, 3292
SfcI	CTRYAG	6 cut(s)	1164, 1279, 1743, 1932, 2829, 2930
Sfr274I	CTCGAG	1 cut(s)	902
SfuI	TTCGAA	1 cut(s)	3233
SinI	GGWCC	4 cut(s)	1364, 1928, 2075, 3389
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	5 cut(s)	246, 997, 2028, 2788, 3285
SmlI	CTYRAG	4 cut(s)	902, 1273, 1514, 1624
SmoI	CTYRAG	4 cut(s)	902, 1273, 1514, 1624
SpeI	ACTAGT	1 cut(s)	308
SphI	GCATGC	2 cut(s)	251, 2309
SspI	AATATT	2 cut(s)	1485, 2163
SspMI	CTAG	9 cut(s)	309, 881, 983, 1958, 2082, 2580, 3075, 3171, 3285
StyD4I	CCNGG	5 cut(s)	381, 572, 1490, 1683, 2216
StyI	CCWWGG	7 cut(s)	737, 1085, 1333, 1360, 2954, 3385, 3516
TaiI	ACGT	4 cut(s)	919, 1272, 1762, 2889
TaqI	TCGA	5 cut(s)	731, 903, 1346, 3233, 3298
TatI	WGTACW	5 cut(s)	111, 363, 535, 2370, 3530
TauI	GCSGC	2 cut(s)	2264, 2863
TspGWI	ACGGA	3 cut(s)	155, 1536, 2646
Vha464I	CTTAAG	1 cut(s)	1514
VneI	GTGCAC	2 cut(s)	2721, 3288
VpaK11BI	GGWCC	4 cut(s)	1364, 1928, 2075, 3389
VspI	ATTAAT	1 cut(s)	2526
XagI	CCTNNNNNAGG	2 cut(s)	301, 1514
XapI	RAATTY	5 cut(s)	2346, 2560, 2650, 3039, 3497
XbaI	TCTAGA	1 cut(s)	982
XceI	RCATGY	6 cut(s)	251, 390, 1560, 2033, 2309, 3296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1488
XhoI	CTCGAG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	1762
XmnI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
XspI	CTAG	9 cut(s)	309, 881, 983, 1958, 2082, 2580, 3075, 3171, 3285
ZrmI	AGTACT	2 cut(s)	113, 365
Zsp2I	ATGCAT	6 cut(s)	1069, 1101, 1862, 2307, 2525, 2878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.