Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007258.1

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4525

Gene Structure 4525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007258.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggcgtgttcatccgaaagatggattgatcgcttgcagttctcctcattgtttgcgcctcccccgcaagatgctccaagacgaaaggctcaagtcacggcctatgtggagtactttggtcagtttacatcagaacagtttccggaggatatttctgagctgatccgtaaccgctacccatctgaggtgaagcgtctctttgacgatgtgttagctatgtttgtgctccatcatcccgagcacgggcatgctgttgtccttcccatcatttcatgtatcattgatggcactctgccctatgaaaggactagtccaccatttgcttctttcatatccttagtctgcccaagcagtgagaatgagtattccgagcagtgggccctggcatgtggggagattttacgaatcttaactcattacaatcgcccaatatacaaggcagaacaacagagttgtgaaacagaaagaagcagtagtggcagccatgctacaacaagcgactctgttgatagtgaatccagccatatacccttagtacagcaagagaggaaacctataagacctttgtctccctggatcactgatatattgcttgctgcacctctgggtatcagaagtgattacttccgctggtgcagtggagttatggggaaatatgctgccggagaactgaagccaccatcaactgcttcttctcgtggatctggaaagcatcctcaactcatgccatcgactccaaggtgggctgttgcaaatggtgctggggtcatattaagtgtttgtgatgaggaagtttctcgttatgaaactgttacattaacagcagtagctgtccctgcccttctacttcctcctccaacaacagctttggatgagcatctagtggcagggctaccagctctcgagccgtatgcacgtttatttcacaggtattatgctattgctactccaagtgctacccaaagacttcttcttggacttctagaagcaccaccatcatgggctcccgatgcacttgatgcagctgtacagcttgtggaacttcttcgcgctgctgaagattatgcatctggaataagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

39.74

Weight (kDa)

5.42

Isoelectric Point (pI)

66.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1050
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	3 cut(s)	65, 172, 628
AclWI	GGATC	3 cut(s)	157, 584, 709
AcuI	CTGAAG	2 cut(s)	692, 1077
AfaI	GTAC	3 cut(s)	113, 537, 1029
AfiI	CCNNNNNNNGG	6 cut(s)	21, 184, 242, 243, 303, 375
AhlI	ACTAGT	1 cut(s)	308
AjnI	CCWGG	2 cut(s)	381, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AluBI	AGCT	7 cut(s)	160, 215, 830, 866, 899, 1025, 1033
AluI	AGCT	7 cut(s)	160, 215, 830, 866, 899, 1025, 1033
Alw21I	GWGCWC	2 cut(s)	228, 243
Alw26I	GTCTC	2 cut(s)	200, 573
AlwI	GGATC	3 cut(s)	157, 584, 709
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	2 cut(s)	236, 902
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	2 cut(s)	99, 378
ApaI	GGGCCC	1 cut(s)	382
ApeKI	GCWGC	5 cut(s)	480, 596, 659, 1022, 1052
Asp700I	GAANNNNTTC	2 cut(s)	138, 1044
AspLEI	GCGC	2 cut(s)	58, 1052
AspS9I	GGNCC	2 cut(s)	378, 379
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	2 cut(s)	236, 902
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	2 cut(s)	382, 1006
BauI	CACGAG	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	228, 243
BbvI	GCAGC	5 cut(s)	492, 583, 646, 1034, 1039
BccI	CCATC	8 cut(s)	15, 187, 237, 272, 278, 688, 736, 1003
BceAI	ACGGC	2 cut(s)	114, 892
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	2 cut(s)	383, 574
BcoDI	GTCTC	2 cut(s)	200, 573
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	3 cut(s)	309, 881, 983
BisI	GCNGC	5 cut(s)	481, 597, 660, 1023, 1053
BlsI	GCNGC	5 cut(s)	482, 598, 661, 1024, 1054
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	383, 574
BmeT110I	CYCGRG	2 cut(s)	236, 902
BmgT120I	GGNCC	2 cut(s)	378, 379
BmiI	GGNNCC	2 cut(s)	380, 1005
BmrFI	CCNGG	2 cut(s)	383, 574
BmsI	GCATC	6 cut(s)	61, 721, 886, 1000, 1009, 1076
BoxI	GACNNNNGTC	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	381, 572, 737
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	6 cut(s)	21, 184, 242, 243, 303, 375
Bse8I	GATNNNNATC	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	383, 574
BseDI	CCNNGG	3 cut(s)	381, 572, 737
BseGI	GGATG	4 cut(s)	11, 232, 712, 877
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	6 cut(s)	21, 184, 242, 243, 303, 375
BseMII	CTCAG	2 cut(s)	147, 174
BseRI	GAGGAG	2 cut(s)	34, 843
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	5 cut(s)	492, 583, 646, 1034, 1039
BseYI	CCCAGC	1 cut(s)	761
BsgI	GTGCAG	2 cut(s)	582, 655
Bsh1236I	CGCG	1 cut(s)	1050
BshFI	GGCC	2 cut(s)	101, 380
BsiHKAI	GWGCWC	2 cut(s)	228, 243
BsiHKCI	CYCGRG	2 cut(s)	236, 902
BsiSI	CCGG	2 cut(s)	143, 663
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	6 cut(s)	21, 184, 242, 243, 303, 375
BsmAI	GTCTC	2 cut(s)	200, 573
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	818
BsnI	GGCC	2 cut(s)	101, 380
BsoBI	CYCGRG	2 cut(s)	236, 902
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	4 cut(s)	228, 243, 382, 1006
Bsp13I	TCCGGA	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	1027
Bsp143I	GATC	4 cut(s)	28, 162, 576, 701
BspACI	CCGC	3 cut(s)	65, 172, 628
BspANI	GGCC	2 cut(s)	101, 380
BspCNI	CTCAG	2 cut(s)	148, 175
BspEI	TCCGGA	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	1050
BspLI	GGNNCC	2 cut(s)	380, 1005
BspPI	GGATC	3 cut(s)	157, 584, 709
BsrGI	TGTACA	1 cut(s)	1027
BssECI	CCNNGG	3 cut(s)	381, 572, 737
BssMI	GATC	4 cut(s)	28, 162, 576, 701
BssSI	CACGAG	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	383, 574
Bst4CI	ACNGT	2 cut(s)	138, 811
BstAPI	GCANNNNNTGC	2 cut(s)	758, 1019
BstAUI	TGTACA	1 cut(s)	1027
BstC8I	GCNNGC	3 cut(s)	35, 249, 594
BstDEI	CTNAG	4 cut(s)	156, 183, 337, 532
BstENI	CCTNNNNNAGG	1 cut(s)	301
BstF5I	GGATG	4 cut(s)	11, 232, 712, 877
BstFNI	CGCG	1 cut(s)	1050
BstHHI	GCGC	2 cut(s)	58, 1052
BstKTI	GATC	4 cut(s)	31, 165, 579, 704
BstMAI	GTCTC	2 cut(s)	200, 573
BstMBI	GATC	4 cut(s)	28, 162, 576, 701
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 477, 758, 836, 1010, 1019
BstNI	CCWGG	2 cut(s)	383, 574
BstNSI	RCATGY	2 cut(s)	251, 390
BstPAI	GACNNNNGTC	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	381, 572
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	1050
BstV1I	GCAGC	5 cut(s)	492, 583, 646, 1034, 1039
BstX2I	RGATCY	1 cut(s)	701
BstXI	CCANNNNNNTGG	1 cut(s)	999
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	101, 380
BtsCI	GGATG	4 cut(s)	11, 232, 712, 877
BtsI	GCAGTG	3 cut(s)	358, 380, 643
BtsIMutI	CAGTG	4 cut(s)	358, 380, 579, 643
Cac8I	GCNNGC	3 cut(s)	35, 249, 594
CaiI	CAGNNNCTG	1 cut(s)	830
CfoI	GCGC	2 cut(s)	58, 1052
Cfr13I	GGNCC	2 cut(s)	378, 379
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	112, 536, 1028
CviAII	CATG	6 cut(s)	248, 273, 387, 485, 724, 999
CviQI	GTAC	3 cut(s)	112, 536, 1028
DdeI	CTNAG	4 cut(s)	156, 183, 337, 532
DpnI	GATC	4 cut(s)	30, 164, 578, 703
DpnII	GATC	4 cut(s)	28, 162, 576, 701
Eco130I	CCWWGG	1 cut(s)	737
Eco24I	GRGCYC	2 cut(s)	382, 1006
Eco57I	CTGAAG	2 cut(s)	692, 1077
Eco88I	CYCGRG	2 cut(s)	236, 902
EcoNI	CCTNNNNNAGG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	381, 572
EcoT14I	CCWWGG	1 cut(s)	737
EcoT22I	ATGCAT	1 cut(s)	1069
EcoT38I	GRGCYC	2 cut(s)	382, 1006
ErhI	CCWWGG	1 cut(s)	737
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	6 cut(s)	251, 276, 390, 488, 727, 1002
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	6 cut(s)	247, 272, 386, 484, 723, 998
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	481, 597, 660, 1023, 1053
FokI	GGATG	3 cut(s)	219, 699, 884
FriOI	GRGCYC	2 cut(s)	382, 1006
Fsp4HI	GCNGC	5 cut(s)	481, 597, 660, 1023, 1053
FspBI	CTAG	3 cut(s)	309, 881, 983
GlaI	GCGC	2 cut(s)	57, 1051
GluI	GCNGC	5 cut(s)	481, 597, 660, 1023, 1053
GsaI	CCCAGC	1 cut(s)	765
HaeIII	GGCC	2 cut(s)	101, 380
HapII	CCGG	2 cut(s)	143, 663
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	58, 1052
Hin1II	CATG	6 cut(s)	251, 276, 390, 488, 727, 1002
Hin6I	GCGC	2 cut(s)	56, 1050
HinP1I	GCGC	2 cut(s)	56, 1050
HinfI	GANTC	4 cut(s)	405, 500, 515, 733
HpaII	CCGG	2 cut(s)	143, 663
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	126, 314
Hpy188I	TCNGA	6 cut(s)	16, 133, 157, 184, 370, 614
Hpy188III	TCNNGA	7 cut(s)	143, 236, 705, 902, 983, 1007, 1071
Hpy8I	GTNNAC	2 cut(s)	126, 314
HpyAV	CCTTC	2 cut(s)	269, 851
HpyCH4III	ACNGT	2 cut(s)	138, 811
HpyCH4IV	ACGT	1 cut(s)	916
HpyCH4V	TGCA	8 cut(s)	37, 599, 636, 752, 914, 1013, 1022, 1067
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 477, 758, 836, 1010, 1019
HpyF3I	CTNAG	4 cut(s)	156, 183, 337, 532
HpySE526I	ACGT	1 cut(s)	916
Hsp92II	CATG	6 cut(s)	251, 276, 390, 488, 727, 1002
HspAI	GCGC	2 cut(s)	56, 1050
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	28, 162, 576, 701
LmnI	GCTCC	3 cut(s)	79, 231, 1009
Lsp1109I	GCAGC	5 cut(s)	492, 583, 646, 1034, 1039
LweI	GCATC	6 cut(s)	61, 721, 886, 1000, 1009, 1076
MaeI	CTAG	3 cut(s)	309, 881, 983
MaeII	ACGT	1 cut(s)	916
MaeIII	GTNAC	3 cut(s)	94, 167, 811
MalI	GATC	4 cut(s)	30, 164, 578, 703
MboI	GATC	4 cut(s)	28, 162, 576, 701
MboII	GAAGA	4 cut(s)	684, 962, 1037, 1070
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	4 cut(s)	228, 243, 382, 1006
MlyI	GAGTC	2 cut(s)	494, 727
MmeI	TCCRAC	1 cut(s)	881
Mph1103I	ATGCAT	1 cut(s)	1069
MroI	TCCGGA	1 cut(s)	142
MroXI	GAANNNNTTC	2 cut(s)	138, 1044
MseI	TTAA	3 cut(s)	410, 773, 818
MslI	CAYNNNNRTG	2 cut(s)	246, 997
MspA1I	CMGCKG	2 cut(s)	630, 1025
MspI	CCGG	2 cut(s)	143, 663
MspR9I	CCNGG	2 cut(s)	383, 574
MvaI	CCWGG	2 cut(s)	383, 574
MvnI	CGCG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	6 cut(s)	64, 477, 758, 836, 1010, 1019
NdeII	GATC	4 cut(s)	28, 162, 576, 701
NlaIII	CATG	6 cut(s)	251, 276, 390, 488, 727, 1002
NlaIV	GGNNCC	2 cut(s)	380, 1005
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	1069
NspI	RCATGY	2 cut(s)	251, 390
PaeI	GCATGC	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	902
PdmI	GAANNNNTTC	2 cut(s)	138, 1044
PfeI	GAWTC	2 cut(s)	405, 515
PkrI	GCNGC	5 cut(s)	482, 598, 661, 1024, 1054
PleI	GAGTC	2 cut(s)	494, 727
PpsI	GAGTC	2 cut(s)	494, 727
PshAI	GACNNNNGTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	381, 572
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	2 cut(s)	381, 572
PspN4I	GGNNCC	2 cut(s)	380, 1005
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	378, 379
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	113, 537, 1029
RsaNI	GTAC	3 cut(s)	112, 536, 1028
RseI	CAYNNNNRTG	2 cut(s)	246, 997
SaqAI	TTAA	3 cut(s)	410, 773, 818
SatI	GCNGC	5 cut(s)	481, 597, 660, 1023, 1053
Sau3AI	GATC	4 cut(s)	28, 162, 576, 701
Sau96I	GGNCC	2 cut(s)	378, 379
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	2 cut(s)	494, 727
ScrFI	CCNGG	2 cut(s)	383, 574
SduI	GDGCHC	4 cut(s)	228, 243, 382, 1006
SfaNI	GCATC	6 cut(s)	61, 721, 886, 1000, 1009, 1076
Sfr274I	CTCGAG	1 cut(s)	902
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	2 cut(s)	246, 997
SmlI	CTYRAG	2 cut(s)	90, 902
SmoI	CTYRAG	2 cut(s)	90, 902
SpeI	ACTAGT	1 cut(s)	308
SphI	GCATGC	1 cut(s)	251
SsiI	CCGC	3 cut(s)	65, 172, 628
SspMI	CTAG	3 cut(s)	309, 881, 983
StyD4I	CCNGG	2 cut(s)	381, 572
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	2 cut(s)	138, 811
TaiI	ACGT	1 cut(s)	919
TaqI	TCGA	2 cut(s)	731, 903
TatI	WGTACW	3 cut(s)	111, 535, 1027
TfiI	GAWTC	2 cut(s)	405, 515
Tru1I	TTAA	3 cut(s)	410, 773, 818
Tru9I	TTAA	3 cut(s)	410, 773, 818
TscAI	CASTG	4 cut(s)	358, 380, 586, 643
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	5 cut(s)	480, 596, 659, 1022, 1052
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	4 cut(s)	261, 315, 319, 819
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	4 cut(s)	358, 380, 586, 643
XagI	CCTNNNNNAGG	1 cut(s)	301
XbaI	TCTAGA	1 cut(s)	982
XceI	RCATGY	2 cut(s)	251, 390
XhoI	CTCGAG	1 cut(s)	902
XmnI	GAANNNNTTC	2 cut(s)	138, 1044
XspI	CTAG	3 cut(s)	309, 881, 983
ZrmI	AGTACT	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.