Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Forward (+)

37613540 .. 37622746

Gene Structure 9207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3543 bp

ATGGCTTGTTCATCCGAAAGATGGATTGATCGGTTGCAATTCTCCTCATTGTTTGCGCCTCCCCCGCAAGACGCTCCAAGACGAAAGGCTCAAGTCACGGCCTATGTGGAGTACTTTGGTCAGTTTACATCAGAACAGTTTCCGGAGGATATTTCTGAGCTGATTCGTAACCGCTACCCATCTGAGGTGAAGCGTCTCTTTGACGATGTGTTAGCTATGTTTGTGCTCCATCATCCCGAGCACGGGCATGCTGTTGTCCTTCCCATCATTTCATGTATCATTGATGGCACTCTGCCCTATGAAAGGACTAGTCCACCATTTGCTTCTTTCATATCCTTAGTCTGCCCAAGCAGTGAGAATGAGTACTCCGAGCAGTGGGCCCTGGCATGTGGGGAGATTTTACGAATCTTAACTCATTACAATCGCCCAATATACAAGGCAGAACAACAGAGTTGTGAAACAGAAAGAAGCAGTAGTGGCAGCCATGCTACAACAAGCGACTCTGTTGATAGTGAATCCAGCCATATACCCTTAGTACAGCAAGAGAGGAAACCTATAAGACCTTTGTCTCCCTGGATCACTGATATATTGCTTGCTGCACCTCTGGGTATCAGAAGTGATTACTTCCGCTGGTGCAGTGGAGTTATGGGGAAATATGCTGCAGGAGAACTGAAGCCACCATCAACTGCTTCTTCTCGTGGATCTGGAAAGCATCCTCAACTCATGCCATCGACTCCAAGGTGGGCTGTTGCAAATGGTGCTGGGGTCATATTAAGTGTTTGTGATGAGGAAGTTTCTCGTTATGAAACTGTTACATTAACAGCAGTAGCTGTCCCTGCCCTTCTACTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTGGCAGGGCTACCAGCTCTCGAGCCGTATGCACGTTTATTTCACAGGTATTATGCTATTGCTACTCCAAGTGCTACCCAAAGACTTCTTCTTGGACTTCTAGAAGCACCACCATCATGGGCTCCCGATGCACTTGATGCAGCTGTACAGCTTGTGGAACTTCTTCGCGCTGCTGAAGATTATGCATCTGGAATAAGGCTTCCAAGGAACTGGATGCATTTGCATTTCTTGCGTGCAATTGGGACTGCAATGTCCATGAGAGCTGGTATAGCAGCTGATGCTGCAGCAGCTTTACTTTTCCGGATACTCTCACAACCTGCATTGCTTTTTCCTCCACTGAGACAAGTTGAGGGAGTTGATGTTCAACATGAGCCTTTGGGTGGCTACGTCTCAAGCTACAGGAAGCAGATAGAAGTTCCTGTGGCCGAAGCAACAATTGAAGCTACTGCCCAAGGGATTGCTTCTATGCTCTGTGCCCATGGACCTGAGGTTGAATGGAGAATCTGTACCATATGGGAAGCTGCCTATGGTCTAATTCCTTTAAGCTCCTCGGCAGTTGACCTTCCTGAGATCATTGTTGCCACTCCATTACAGCCTCCAATATTATCCTGGAATCTGTATATACCCCTCCTTAAGGTCTTGGAATATCTTCCTCGTGGAAGTCCGTCTGAAGCATGTCTTATGAAGATATTTGTTGCCACAGTTGAAGCGATTCTTCAAAGGACATTTCCACCTGAGTCCTCAAGAGAGCAGAACAGAAAAACAAGATACCTTTTCGGCATAGGGTCTGCCTCAAAAAACCTGGCTGTGGCAGAGCTTCGGACAATGGTTCATTCACTATTCTTAGAATCATGTGCATCTGTAGAGCTTGCTTCACGTCTACTGTTTGTTGTGCTAACTGTATGTGTTAGTCATGAAGCTCAGTCCAGTGGGAGTAAGAAAGCACGAGTTGAAGAAAGCTACCCACTTGATGAATGCATTGAGGAATCACGAGAAATGTCTGAAAGGCAGAGAGACAGGACAAGTAAAAAAACCAAAAAACAAGGACCTGTAGCAGCATTTGACTCTTATGTTCTAGCTGCTGTTTGTGCTCTTGCCTGTGAGCTTCAGTTGTTCCCTTTGGTTTCAAGGGCGAGCAACCATTCACATGCTAAAGATGCAAAACATATGGCAAAGCCTGCCAAACCAATTGGACCTGCTAGTTCTTACAAAAAAATAAATGGGTCTAATCAGTTTCAAATTAGTGTTGACTCAGCAATTTGCCACACCCGCAGAATATTGGCCATTTTGGAGGCACTGTTTTTGCTGAAACCATCGTCTGTTGGCACCTCCTGGAGTTACAGTTCAAATGAGATAGTTGCAGCAGCTATGGTTGCGGCTCATGTATCTGAATTATTTAGATGGTCAAAGGCTTGTATGCATGCACTCTCTGTCTTGATGCGCTGCAAGTGGGATAATGAAATTTCCTCCAGAGCATCATCACTGTACAACCTCATAGATATTCACAGCAAGGCTGTTGCATCTATTGTTAACAAGGCTGAACCACTGGAAGCACACTTGATGCAAGTGCCAATTTGGAGGGATTCTGCTGTGTGTTCTGAAGGTAGAAAGAGAAGTCATTGTGAAAAGAGTAAATGCATTAATATAGGGCAGTCCTCTGGCTCGCAATTTGAAAACTCAGTGCATTCAGAAACTAGAATCAAATCTGAGAGTGCGTCACATTCTAATGGGGGTTCGGGAAATACATTTGGTAAAGGTGTTGCAAATTTTCCATTAGATGCTTCGGAATTGGCCAACTTCCTTACTATGGACAGGCATATAGGATTTAGTTGCAGTGCACAGGTTCTTCTAAGATCAGTACTGACAGAGAAACAAGAGCTATGTTTCTCAGTTGTCTCACTGTTGTGGCACAAGTTACTTGCGTCTCCTGAAACCCAACCTACCGCAGAAAGCACTTCTGCTCAACAAGGATGGCGGCAGGTCGTTGATGCATTATGCAACGTTGTATCAGCAACACCAACGAAAGCAGCCACAGCAGTCGTTCTACAGGCCGAGAGGGAATTGCAGCCTTGGATTGCCAAAGATGATGATCAAGGTCAGAAGATGTGGAGAATCAACCAGAGGATTGTGAAATTGATTGTAGAGTTGATGAGAATTCATGATAGCCCAGAATCCTTGGTAATTTTGTCTAGCGCCTCAGATCTACTTCTGCGTGCCACTGATGGGATGCTTGTTGATGGAGAAGCTTGCACTTTACCCCAGCTGGAGCTACTGGAAGCAACTGCTAGAGCAGTTAAGCCTGTGCTGGAGTGGGGAGAATCTGGGCTTGCAGTCGCAGATGGCCTTTCGAACCTGCTAAAGTGTCGTCTGTCAGCTACCATCCGATGCCTTTCTCATCCTAGTGCACACGTTCGAGCTTTGAGCATATCAGTTCTTCGTGATATTTTGCAAGCCAGTTCAATTAGACCTAACCCTAATCCAGTGCAAATAAATGGTATCCATGGTCCTTCCTATAAGTATTTTAACCTAGATGTTATTGATTGGCAAGCTGATATTGAAAAGTGCTTGACATGGGAAGCTCATAGCCGACTTGCGACCGGAATGCCTATTAAATTTCTGGATACTGCTGCCAAGGAATTGGGTTGTACTATTTCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1180

Amino Acids

129.5

Weight (kDa)

6.46

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1132
Acc36I	ACCTGC	4 cut(s)	1207, 2086, 2851, 3243
AccB1I	GGYRCC	1 cut(s)	2207
AccI	GTMKAC	1 cut(s)	1762
AccII	CGCG	1 cut(s)	1050
AccIII	TCCGGA	2 cut(s)	142, 1182
AciI	CCGC	7 cut(s)	65, 172, 628, 2152, 2258, 2826, 2857
AclI	AACGTT	1 cut(s)	2883
AclWI	GGATC	2 cut(s)	584, 709
AcoI	YGGCCR	3 cut(s)	1305, 2163, 2673
AcsI	RAATTY	4 cut(s)	2343, 2647, 3036, 3494
AcuI	CTGAAG	5 cut(s)	692, 1077, 1572, 1973, 2502
AfaI	GTAC	8 cut(s)	113, 365, 537, 1029, 1390, 2369, 2742, 3529
AflII	CTTAAG	1 cut(s)	1514
AflIII	ACRYGT	1 cut(s)	3289
AhlI	ACTAGT	1 cut(s)	308
AjiI	CACGTC	1 cut(s)	1760
AjnI	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2213
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AleI	CACNNNNGTG	1 cut(s)	2785
AloI	GAACNNNNNNTCC	4 cut(s)	1227, 1259, 2209, 2241
Alw21I	GWGCWC	5 cut(s)	228, 243, 1975, 2722, 3289
Alw26I	GTCTC	7 cut(s)	200, 573, 1216, 1276, 1890, 2782, 2811
Alw44I	GTGCAC	2 cut(s)	2718, 3285
AlwI	GGATC	2 cut(s)	584, 709
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	2 cut(s)	236, 902
Aor13HI	TCCGGA	2 cut(s)	142, 1182
AoxI	GGCC	7 cut(s)	99, 378, 1305, 2163, 2673, 2931, 3223
ApaI	GGGCCC	1 cut(s)	382
ApaLI	GTGCAC	2 cut(s)	2718, 3285
ApoI	RAATTY	4 cut(s)	2343, 2647, 3036, 3494
AseI	ATTAAT	1 cut(s)	2523
Asp700I	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
AspLEI	GCGC	4 cut(s)	58, 1052, 2325, 3077
AspS9I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3386
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	3230
AvaI	CYCGRG	2 cut(s)	236, 902
AvaII	GGWCC	4 cut(s)	1364, 1928, 2075, 3386
AxyI	CCTNAGG	1 cut(s)	1368
BaeGI	GKGCMC	4 cut(s)	382, 1360, 2722, 3289
BalI	TGGCCA	2 cut(s)	2165, 2675
BanI	GGYRCC	1 cut(s)	2207
BanII	GRGCYC	2 cut(s)	382, 1006
BauI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
Bbv12I	GWGCWC	5 cut(s)	228, 243, 1975, 2722, 3289
BceAI	ACGGC	2 cut(s)	114, 892
BcgI	CGANNNNNNTGC	4 cut(s)	893, 927, 3466, 3500
BciT130I	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2215
BciVI	GTATCC	3 cut(s)	1179, 3389, 3496
BclI	TGATCA	1 cut(s)	2971
BcoDI	GTCTC	7 cut(s)	200, 573, 1216, 1276, 1890, 2782, 2811
BcuI	ACTAGT	1 cut(s)	308
BfmI	CTRYAG	6 cut(s)	660, 1164, 1279, 1743, 1932, 2927
BfoI	RGCGCY	1 cut(s)	3078
BfrI	CTTAAG	1 cut(s)	1514
BfuAI	ACCTGC	4 cut(s)	1207, 2086, 2851, 3243
BfuI	GTATCC	3 cut(s)	1179, 3389, 3496
BglII	AGATCT	1 cut(s)	3082
BmcAI	AGTACT	3 cut(s)	113, 365, 2742
Bme1390I	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2215
Bme18I	GGWCC	4 cut(s)	1364, 1928, 2075, 3386
BmeT110I	CYCGRG	2 cut(s)	236, 902
BmgBI	CACGTC	1 cut(s)	1760
BmgT120I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3386
BmiI	GGNNCC	3 cut(s)	380, 1005, 2209
BmrFI	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2215
BoxI	GACNNNNGTC	1 cut(s)	565
BpmI	CTGGAG	4 cut(s)	2236, 2335, 3167, 3209
Bpu14I	TTCGAA	1 cut(s)	3230
BpuEI	CTTGAG	3 cut(s)	75, 1258, 1609
BsaBI	GATNNNNATC	2 cut(s)	876, 2970
BsaWI	WCCGGW	3 cut(s)	142, 1182, 3479
BsaXI	ACNNNNNCTCC	8 cut(s)	1227, 1257, 1372, 1402, 2165, 2195, 2209, 2239
Bse1I	ACTGG	6 cut(s)	1097, 1809, 2433, 3159, 3336, 3362
Bse21I	CCTNAGG	1 cut(s)	1368
Bse3DI	GCAATG	2 cut(s)	1137, 1202
Bse8I	GATNNNNATC	2 cut(s)	876, 2970
BseAI	TCCGGA	2 cut(s)	142, 1182
BseBI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2215
BseGI	GGATG	9 cut(s)	11, 232, 712, 877, 1101, 2858, 3114, 3261, 3277
BseJI	GATNNNNATC	2 cut(s)	876, 2970
BseMI	GCAATG	2 cut(s)	1137, 1202
BseNI	ACTGG	6 cut(s)	1097, 1809, 2433, 3159, 3336, 3362
BseRI	GAGGAG	3 cut(s)	34, 843, 1420
BseSI	GKGCMC	4 cut(s)	382, 1360, 2722, 3289
BseYI	CCCAGC	2 cut(s)	761, 3141
BsgI	GTGCAG	2 cut(s)	582, 655
Bsh1236I	CGCG	1 cut(s)	1050
Bsh1285I	CGRYCG	1 cut(s)	3480
BshFI	GGCC	7 cut(s)	101, 380, 1307, 2165, 2675, 2933, 3225
BshNI	GGYRCC	1 cut(s)	2207
BsiEI	CGRYCG	1 cut(s)	3480
BsiHKAI	GWGCWC	5 cut(s)	228, 243, 1975, 2722, 3289
BsiHKCI	CYCGRG	2 cut(s)	236, 902
BsiSI	CCGG	3 cut(s)	143, 1183, 3480
BslFI	GGGAC	2 cut(s)	818, 1138
BsmAI	GTCTC	7 cut(s)	200, 573, 1216, 1276, 1890, 2782, 2811
BsmBI	CGTCTC	3 cut(s)	200, 1276, 2811
BsmFI	GGGAC	2 cut(s)	818, 1138
BsmI	GAATGC	3 cut(s)	1862, 2566, 3489
BsnI	GGCC	7 cut(s)	101, 380, 1307, 2165, 2675, 2933, 3225
BsoBI	CYCGRG	2 cut(s)	236, 902
Bsp119I	TTCGAA	1 cut(s)	3230
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	8 cut(s)	228, 243, 382, 1006, 1360, 1975, 2722, 3289
Bsp13I	TCCGGA	2 cut(s)	142, 1182
Bsp1407I	TGTACA	2 cut(s)	1027, 2367
Bsp143I	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
Bsp19I	CCATGG	2 cut(s)	1360, 3382
BspACI	CCGC	7 cut(s)	65, 172, 628, 2152, 2258, 2826, 2857
BspANI	GGCC	7 cut(s)	101, 380, 1307, 2165, 2675, 2933, 3225
BspEI	TCCGGA	2 cut(s)	142, 1182
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	2 cut(s)	1795, 3040
BspLI	GGNNCC	3 cut(s)	380, 1005, 2209
BspMAI	CTGCAG	2 cut(s)	664, 1168
BspMI	ACCTGC	4 cut(s)	1207, 2086, 2851, 3243
BspPI	GGATC	2 cut(s)	584, 709
BspT104I	TTCGAA	1 cut(s)	3230
BspT107I	GGYRCC	1 cut(s)	2207
BspTI	CTTAAG	1 cut(s)	1514
BsrDI	GCAATG	2 cut(s)	1137, 1202
BsrGI	TGTACA	2 cut(s)	1027, 2367
BsrI	ACTGG	6 cut(s)	1097, 1809, 2433, 3159, 3336, 3362
BssMI	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
BssSI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
BssT1I	CCWWGG	8 cut(s)	737, 1085, 1333, 1360, 2951, 3057, 3382, 3513
Bst2BI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
Bst2UI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2215
Bst4CI	ACNGT	9 cut(s)	138, 811, 1585, 1767, 1783, 2181, 2225, 2367, 2784
BstAFI	CTTAAG	1 cut(s)	1514
BstAPI	GCANNNNNTGC	5 cut(s)	758, 1019, 1111, 1160, 2060
BstAUI	TGTACA	2 cut(s)	1027, 2367
BstBI	TTCGAA	1 cut(s)	3230
BstDSI	CCRYGG	2 cut(s)	1360, 3382
BstENI	CCTNNNNNAGG	2 cut(s)	301, 1514
BstF5I	GGATG	9 cut(s)	11, 232, 712, 877, 1101, 2858, 3114, 3261, 3277
BstFNI	CGCG	1 cut(s)	1050
BstH2I	RGCGCY	1 cut(s)	3078
BstHHI	GCGC	4 cut(s)	58, 1052, 2325, 3077
BstKTI	GATC	7 cut(s)	31, 579, 704, 1455, 2738, 2974, 3085
BstMAI	GTCTC	7 cut(s)	200, 573, 1216, 1276, 1890, 2782, 2811
BstMBI	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
BstMCI	CGRYCG	1 cut(s)	3480
BstNI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2215
BstNSI	RCATGY	5 cut(s)	251, 390, 1560, 2033, 2306
BstPAI	GACNNNNGTC	1 cut(s)	565
BstSCI	CCNGG	5 cut(s)	381, 572, 1490, 1683, 2213
BstSFI	CTRYAG	6 cut(s)	660, 1164, 1279, 1743, 1932, 2927
BstSLI	GKGCMC	4 cut(s)	382, 1360, 2722, 3289
BstUI	CGCG	1 cut(s)	1050
BstX2I	RGATCY	2 cut(s)	701, 3082
BstXI	CCANNNNNNTGG	3 cut(s)	999, 1092, 3520
BstYI	RGATCY	2 cut(s)	701, 3082
Bsu36I	CCTNAGG	1 cut(s)	1368
BsuI	GTATCC	3 cut(s)	1179, 3389, 3496
BsuRI	GGCC	7 cut(s)	101, 380, 1307, 2165, 2675, 2933, 3225
BtgI	CCRYGG	2 cut(s)	1360, 3382
BtrI	CACGTC	1 cut(s)	1760
BtsCI	GGATG	9 cut(s)	11, 232, 712, 877, 1101, 2858, 3114, 3261, 3277
BtsI	GCAGTG	4 cut(s)	358, 380, 643, 2722
BveI	ACCTGC	4 cut(s)	1207, 2086, 2851, 3243
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	2 cut(s)	1795, 3040
CfoI	GCGC	4 cut(s)	58, 1052, 2325, 3077
Cfr13I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3386
CseI	GACGC	4 cut(s)	80, 182, 2586, 2793
Csp6I	GTAC	8 cut(s)	112, 364, 536, 1028, 1389, 2368, 2741, 3528
CviQI	GTAC	8 cut(s)	112, 364, 536, 1028, 1389, 2368, 2741, 3528
DpnI	GATC	7 cut(s)	30, 578, 703, 1454, 2737, 2973, 3084
DpnII	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
DrdI	GACNNNNNNGTC	1 cut(s)	1132
DseDI	GACNNNNNNGTC	1 cut(s)	1132
EaeI	YGGCCR	3 cut(s)	1305, 2163, 2673
Eco130I	CCWWGG	8 cut(s)	737, 1085, 1333, 1360, 2951, 3057, 3382, 3513
Eco24I	GRGCYC	2 cut(s)	382, 1006
Eco47I	GGWCC	4 cut(s)	1364, 1928, 2075, 3386
Eco57I	CTGAAG	5 cut(s)	692, 1077, 1572, 1973, 2502
Eco81I	CCTNAGG	1 cut(s)	1368
Eco88I	CYCGRG	2 cut(s)	236, 902
EcoNI	CCTNNNNNAGG	2 cut(s)	301, 1514
EcoO109I	RGGNCCY	2 cut(s)	379, 1928
EcoRI	GAATTC	1 cut(s)	3036
EcoRII	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2213
EcoT14I	CCWWGG	8 cut(s)	737, 1085, 1333, 1360, 2951, 3057, 3382, 3513
EcoT22I	ATGCAT	6 cut(s)	1069, 1101, 1862, 2304, 2522, 2875
EcoT38I	GRGCYC	2 cut(s)	382, 1006
ErhI	CCWWGG	8 cut(s)	737, 1085, 1333, 1360, 2951, 3057, 3382, 3513
Esp3I	CGTCTC	3 cut(s)	200, 1276, 2811
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 1545, 1577, 1581, 1613
FaqI	GGGAC	2 cut(s)	818, 1138
FauI	CCCGC	2 cut(s)	72, 2159
FauNDI	CATATG	2 cut(s)	1394, 2049
FbaI	TGATCA	1 cut(s)	2971
FblI	GTMKAC	1 cut(s)	1762
FokI	GGATG	8 cut(s)	219, 699, 884, 1108, 2865, 3121, 3248, 3264
FriOI	GRGCYC	2 cut(s)	382, 1006
GlaI	GCGC	4 cut(s)	57, 1051, 2324, 3076
GsaI	CCCAGC	2 cut(s)	765, 3145
GsuI	CTGGAG	4 cut(s)	2236, 2335, 3167, 3209
HaeII	RGCGCY	1 cut(s)	3078
HaeIII	GGCC	7 cut(s)	101, 380, 1307, 2165, 2675, 2933, 3225
HapII	CCGG	3 cut(s)	143, 1183, 3480
HgaI	GACGC	4 cut(s)	80, 182, 2586, 2793
HhaI	GCGC	4 cut(s)	58, 1052, 2325, 3077
Hin6I	GCGC	4 cut(s)	56, 1050, 2323, 3075
HinP1I	GCGC	4 cut(s)	56, 1050, 2323, 3075
HincII	GTYRAC	3 cut(s)	1441, 2131, 2413
HindII	GTYRAC	3 cut(s)	1441, 2131, 2413
HindIII	AAGCTT	1 cut(s)	3126
HpaI	GTTAAC	1 cut(s)	2413
HpaII	CCGG	3 cut(s)	143, 1183, 3480
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	8 cut(s)	126, 314, 1441, 1763, 2131, 2413, 2720, 3287
Hpy8I	GTNNAC	8 cut(s)	126, 314, 1441, 1763, 2131, 2413, 2720, 3287
HpyAV	CCTTC	5 cut(s)	269, 851, 1454, 2477, 3399
HpyCH4III	ACNGT	9 cut(s)	138, 811, 1585, 1767, 1783, 2181, 2225, 2367, 2784
HpyCH4IV	ACGT	5 cut(s)	916, 1269, 1759, 2883, 3291
HpySE526I	ACGT	5 cut(s)	916, 1269, 1759, 2883, 3291
HspAI	GCGC	4 cut(s)	56, 1050, 2323, 3075
Kpn2I	TCCGGA	2 cut(s)	142, 1182
Ksp22I	TGATCA	1 cut(s)	2971
KspAI	GTTAAC	1 cut(s)	2413
Kzo9I	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
LmnI	GCTCC	5 cut(s)	79, 231, 1009, 1433, 3148
MaeII	ACGT	5 cut(s)	916, 1269, 1759, 2883, 3291
MaeIII	GTNAC	6 cut(s)	94, 167, 811, 2219, 2598, 2796
MalI	GATC	7 cut(s)	30, 578, 703, 1454, 2737, 2973, 3084
MboI	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
MfeI	CAATTG	3 cut(s)	1119, 1317, 2070
MflI	RGATCY	2 cut(s)	701, 3082
MhlI	GDGCHC	8 cut(s)	228, 243, 382, 1006, 1360, 1975, 2722, 3289
MlsI	TGGCCA	2 cut(s)	2165, 2675
MluNI	TGGCCA	2 cut(s)	2165, 2675
MlyI	GAGTC	5 cut(s)	494, 727, 1628, 1940, 2126
MmeI	TCCRAC	1 cut(s)	881
Mox20I	TGGCCA	2 cut(s)	2165, 2675
Mph1103I	ATGCAT	6 cut(s)	1069, 1101, 1862, 2304, 2522, 2875
MroI	TCCGGA	2 cut(s)	142, 1182
MroXI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
MscI	TGGCCA	2 cut(s)	2165, 2675
MslI	CAYNNNNRTG	6 cut(s)	246, 997, 2028, 2607, 2785, 3282
Msp20I	TGGCCA	2 cut(s)	2165, 2675
MspA1I	CMGCKG	4 cut(s)	630, 1025, 1157, 3145
MspCI	CTTAAG	1 cut(s)	1514
MspI	CCGG	3 cut(s)	143, 1183, 3480
MspR9I	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2215
MunI	CAATTG	3 cut(s)	1119, 1317, 2070
Mva1269I	GAATGC	3 cut(s)	1862, 2566, 3489
MvaI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2215
MvnI	CGCG	1 cut(s)	1050
NcoI	CCATGG	2 cut(s)	1360, 3382
NdeI	CATATG	2 cut(s)	1394, 2049
NdeII	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
NlaIV	GGNNCC	3 cut(s)	380, 1005, 2209
NmeAIII	GCCGAG	2 cut(s)	1412, 2959
NmuCI	GTSAC	2 cut(s)	94, 2598
NsiI	ATGCAT	6 cut(s)	1069, 1101, 1862, 2304, 2522, 2875
NspI	RCATGY	5 cut(s)	251, 390, 1560, 2033, 2306
NspV	TTCGAA	1 cut(s)	3230
OliI	CACNNNNGTG	1 cut(s)	2785
PaeI	GCATGC	2 cut(s)	251, 2306
PaeR7I	CTCGAG	1 cut(s)	902
PagI	TCATGA	2 cut(s)	1795, 3040
PctI	GAATGC	3 cut(s)	1862, 2566, 3489
PdmI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
PfoI	TCCNGGA	2 cut(s)	1490, 2213
PleI	GAGTC	5 cut(s)	494, 727, 1627, 1940, 2126
PpsI	GAGTC	5 cut(s)	494, 727, 1627, 1940, 2126
PpuMI	RGGWCCY	1 cut(s)	1928
PshAI	GACNNNNGTC	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	2523
Psp1406I	AACGTT	1 cut(s)	2883
Psp5II	RGGWCCY	1 cut(s)	1928
Psp6I	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2213
PspFI	CCCAGC	2 cut(s)	761, 3141
PspGI	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2213
PspN4I	GGNNCC	3 cut(s)	380, 1005, 2209
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3386
PspPPI	RGGWCCY	1 cut(s)	1928
PstI	CTGCAG	2 cut(s)	664, 1168
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	701, 3082
PvuII	CAGCTG	3 cut(s)	1025, 1157, 3145
RsaI	GTAC	8 cut(s)	113, 365, 537, 1029, 1390, 2369, 2742, 3529
RsaNI	GTAC	8 cut(s)	112, 364, 536, 1028, 1389, 2368, 2741, 3528
RseI	CAYNNNNRTG	6 cut(s)	246, 997, 2028, 2607, 2785, 3282
Sau3AI	GATC	7 cut(s)	28, 576, 701, 1452, 2735, 2971, 3082
Sau96I	GGNCC	6 cut(s)	378, 379, 1364, 1928, 2075, 3386
ScaI	AGTACT	3 cut(s)	113, 365, 2742
SchI	GAGTC	5 cut(s)	494, 727, 1628, 1940, 2126
ScrFI	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2215
SduI	GDGCHC	8 cut(s)	228, 243, 382, 1006, 1360, 1975, 2722, 3289
SfcI	CTRYAG	6 cut(s)	660, 1164, 1279, 1743, 1932, 2927
Sfr274I	CTCGAG	1 cut(s)	902
SfuI	TTCGAA	1 cut(s)	3230
SinI	GGWCC	4 cut(s)	1364, 1928, 2075, 3386
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	6 cut(s)	246, 997, 2028, 2607, 2785, 3282
SmlI	CTYRAG	5 cut(s)	90, 902, 1273, 1514, 1624
SmoI	CTYRAG	5 cut(s)	90, 902, 1273, 1514, 1624
SpeI	ACTAGT	1 cut(s)	308
SphI	GCATGC	2 cut(s)	251, 2306
SsiI	CCGC	7 cut(s)	65, 172, 628, 2152, 2258, 2826, 2857
SspI	AATATT	2 cut(s)	1485, 2160
StyD4I	CCNGG	5 cut(s)	381, 572, 1490, 1683, 2213
StyI	CCWWGG	8 cut(s)	737, 1085, 1333, 1360, 2951, 3057, 3382, 3513
TaaI	ACNGT	9 cut(s)	138, 811, 1585, 1767, 1783, 2181, 2225, 2367, 2784
TaiI	ACGT	5 cut(s)	919, 1272, 1762, 2886, 3294
TaqI	TCGA	4 cut(s)	731, 903, 3230, 3295
TatI	WGTACW	7 cut(s)	111, 363, 535, 1027, 2367, 2740, 3527
TauI	GCSGC	2 cut(s)	2261, 2860
TseFI	GTSAC	2 cut(s)	94, 2598
Tsp45I	GTSAC	2 cut(s)	94, 2598
TspGWI	ACGGA	1 cut(s)	1536
Vha464I	CTTAAG	1 cut(s)	1514
VneI	GTGCAC	2 cut(s)	2718, 3285
VpaK11BI	GGWCC	4 cut(s)	1364, 1928, 2075, 3386
VspI	ATTAAT	1 cut(s)	2523
XagI	CCTNNNNNAGG	2 cut(s)	301, 1514
XapI	RAATTY	4 cut(s)	2343, 2647, 3036, 3494
XbaI	TCTAGA	1 cut(s)	982
XceI	RCATGY	5 cut(s)	251, 390, 1560, 2033, 2306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1488
XhoI	CTCGAG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	1762
XmnI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
ZrmI	AGTACT	3 cut(s)	113, 365, 2742
Zsp2I	ATGCAT	6 cut(s)	1069, 1101, 1862, 2304, 2522, 2875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.