Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Forward (+)

10756376 .. 10757826

Gene Structure 1451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0080400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAAACCAAAACTGATCAGCAGCTTCACATTTTCTTCCTTCCCTACATGGCTCAAGGCCACACTTTACCCCTTATAGACATAGCCAAACTATTTGCTTCACGTGGTGTAAAATCCACCTTAATAACCACCCCTGTCAATGCACCATTTTTCTCCAAAGCAATCCAAACTAGCAAAAGTTTGGGTTTTGAAATTGAACTTCTTGTCATCAAATTCCCATCAACTGAAGTCGGGTTGCCTGAAGGAATTGAAAGAACAAACTTGCGTAAAAACCAAGAGCAGGTGGAAAAACTCTATGTTTCCTTGGGCTACAGAGATGTTGCTGCCAAGTTTGGGATTCCAAGGATCATCTTTCATGGACCTGGTTTTTTCCCCTTGTGTGCTTCAACTAGTGTGATGCGGTACAAACCTCAGACGGCGGTTTCATCTGATTCAGAATCTTTTGTTATTCCTGGTCTTCCAGATGAGATCAAGATGACAAAAAACAAACTAGCTCCTTTTCTTATTCTAGAGGGTGAGTCAGAACTCATCAAATTGGTCAAAGCATCCATAGAGGCTGATGAAACAAGCTATGGGATTATAGTTAACAGCTTCTATGAACTTGAACCAGATTATGCAGATCATTATAGGAAGGTGTTTGGCAGGAAAGCATGGCATATCGGCCCTGCTTCTTTATGCGAGACAGAAAAAGATAAAGTAGAGAGGGGAAGGGAAGGCTCGGTTGATGAAGTACATGACTGCTTGAACTGGCTTAATTCTAAGAAACCCAATTCAGTTGTTTATATATGTTTTGGAAGCCTCACCAATTTCAGTGATTGTCAGCTCTTAGAAATCGCCTTGGCTCTTGAGGCTTCTCGACAGCAATTCATTTGGGTTGTGAAGAAAGAAAAGAATGATAAAGAAGAGTGGTTGCCCGAAGGATTTGAGCAGAGAGTGGAGGGAAGGGGACTGATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTTCAACATGAAGCAGTTGGGGCCTTTCTCACTCATTGTGGGTGGAACTCAACCCTTGAAGGAGTGTGTGCTGGGGTGCCAATGATCACGTGGCCAGTGTACGCAGATCAATTTTACAATGAGAAGTTGGTGACTGAGATACTTGGGATTGGGGTTGCTGTTGGTGTTCAAAAGTGGGAGGATATTAGTATGAAGAGCAAAGCCAGTGTGAAGAAGGAGACCATAGAGAAGGCTGTGACTGAATTCATGGTCGGTCATGAAAAAGAGAAAATGAGAAGCAAAGTGCTTGAGCTCAGAGAGCTCGCAAGGAGGACAGTTGAAGATGGTGGTTCATCGTTCTCGGATTTAACTGCTCTAATTGAAGAGTTGAAGTCTCTCGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

456

Amino Acids

51.19

Weight (kDa)

5.76

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	249 - 383	1.6e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	956
AarI	CACCTGC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	1060
AciI	CCGC	2 cut(s)	400, 419
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	1076
AcsI	RAATTY	2 cut(s)	212, 1226
AcuI	CTGAAG	2 cut(s)	246, 261
AcvI	CACGTG	2 cut(s)	104, 1074
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	404, 732, 1085
AfiI	CCNNNNNNNGG	2 cut(s)	280, 333
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	361, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	7 cut(s)	25, 494, 570, 591, 823, 1276, 1285
AluI	AGCT	7 cut(s)	25, 494, 570, 591, 823, 1276, 1285
Alw21I	GWGCWC	2 cut(s)	1278, 1287
Alw26I	GTCTC	3 cut(s)	674, 1196, 1362
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	1361
AoxI	GGCC	4 cut(s)	58, 661, 1005, 1076
ApeKI	GCWGC	2 cut(s)	22, 323
ApoI	RAATTY	2 cut(s)	212, 1226
AspS9I	GGNCC	3 cut(s)	359, 662, 1005
AsuHPI	GGTGA	3 cut(s)	527, 793, 1126
AvaI	CYCGRG	1 cut(s)	1361
AvaII	GGWCC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	1078
BanI	GGYRCC	1 cut(s)	1060
BanII	GRGCYC	3 cut(s)	970, 1278, 1287
BbrPI	CACGTG	2 cut(s)	104, 1074
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	2 cut(s)	1278, 1287
BbvI	GCAGC	2 cut(s)	34, 310
BccI	CCATC	2 cut(s)	226, 1301
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	363, 453
BclI	TGATCA	2 cut(s)	16, 1068
BcoDI	GTCTC	3 cut(s)	674, 1196, 1362
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	4 cut(s)	171, 390, 491, 509
BfmI	CTRYAG	1 cut(s)	310
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	2 cut(s)	23, 324
BlsI	GCNGC	2 cut(s)	24, 325
Bme1390I	CCNGG	2 cut(s)	363, 453
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	1361
BmgT120I	GGNCC	3 cut(s)	359, 662, 1005
BmiI	GGNNCC	3 cut(s)	969, 1006, 1062
BmrFI	CCNGG	2 cut(s)	363, 453
BmsI	GCATC	2 cut(s)	387, 554
BpiI	GAAGAC	1 cut(s)	449
BpuEI	CTTGAG	3 cut(s)	39, 866, 1292
BsaAI	YACGTR	2 cut(s)	104, 1074
BsaI	GGTCTC	1 cut(s)	1196
BsaJI	CCNNGG	3 cut(s)	303, 341, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 333
Bse1I	ACTGG	3 cut(s)	752, 1079, 1188
BseBI	CCWGG	2 cut(s)	363, 453
BseDI	CCNNGG	3 cut(s)	303, 341, 837
BseGI	GGATG	1 cut(s)	545
BseLI	CCNNNNNNNGG	2 cut(s)	280, 333
BseMII	CTCAG	3 cut(s)	425, 1110, 1291
BseNI	ACTGG	3 cut(s)	752, 1079, 1188
BseXI	GCAGC	2 cut(s)	34, 310
BseYI	CCCAGC	1 cut(s)	1055
BshFI	GGCC	4 cut(s)	60, 663, 1007, 1078
BshNI	GGYRCC	1 cut(s)	1060
BsiHKAI	GWGCWC	2 cut(s)	1278, 1287
BsiHKCI	CYCGRG	1 cut(s)	1361
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	2 cut(s)	280, 333
BsmAI	GTCTC	3 cut(s)	674, 1196, 1362
BsmFI	GGGAC	1 cut(s)	960
BsnI	GGCC	4 cut(s)	60, 663, 1007, 1078
Bso31I	GGTCTC	1 cut(s)	1196
BsoBI	CYCGRG	1 cut(s)	1361
Bsp1286I	GDGCHC	3 cut(s)	970, 1278, 1287
Bsp143I	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
BspACI	CCGC	2 cut(s)	400, 419
BspANI	GGCC	4 cut(s)	60, 663, 1007, 1078
BspCNI	CTCAG	3 cut(s)	424, 1111, 1290
BspHI	TCATGA	1 cut(s)	1240
BspLI	GGNNCC	3 cut(s)	969, 1006, 1062
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	1172
BspT107I	GGYRCC	1 cut(s)	1060
BspTNI	GGTCTC	1 cut(s)	1196
BsrI	ACTGG	3 cut(s)	752, 1079, 1188
BssECI	CCNNGG	3 cut(s)	303, 341, 837
BssMI	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
BssT1I	CCWWGG	3 cut(s)	303, 341, 837
Bst2UI	CCWGG	2 cut(s)	363, 453
Bst4CI	ACNGT	1 cut(s)	1300
Bst6I	CTCTTC	3 cut(s)	897, 1172, 1341
BstBAI	YACGTR	2 cut(s)	104, 1074
BstC8I	GCNNGC	1 cut(s)	1287
BstDEI	CTNAG	5 cut(s)	411, 759, 826, 1119, 1277
BstF5I	GGATG	1 cut(s)	545
BstKTI	GATC	6 cut(s)	19, 348, 471, 622, 1071, 1093
BstMAI	GTCTC	3 cut(s)	674, 1196, 1362
BstMBI	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
BstMWI	GCNNNNNNNGC	3 cut(s)	848, 1004, 1282
BstNI	CCWGG	2 cut(s)	363, 453
BstSCI	CCNGG	2 cut(s)	361, 451
BstSFI	CTRYAG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	34, 310
BstV2I	GAAGAC	1 cut(s)	449
BsuRI	GGCC	4 cut(s)	60, 663, 1007, 1078
BtsCI	GGATG	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	817, 1086, 1195
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	1287
CciI	TCATGA	1 cut(s)	1240
Cfr13I	GGNCC	3 cut(s)	359, 662, 1005
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	403, 731, 1084
CviAII	CATG	7 cut(s)	49, 356, 651, 734, 992, 1231, 1241
CviQI	GTAC	3 cut(s)	403, 731, 1084
DdeI	CTNAG	5 cut(s)	411, 759, 826, 1119, 1277
DpnI	GATC	6 cut(s)	18, 347, 470, 621, 1070, 1092
DpnII	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	1076
Eam1104I	CTCTTC	3 cut(s)	897, 1172, 1341
EarI	CTCTTC	3 cut(s)	897, 1172, 1341
Ecl136II	GAGCTC	2 cut(s)	1276, 1285
Eco130I	CCWWGG	3 cut(s)	303, 341, 837
Eco24I	GRGCYC	3 cut(s)	970, 1278, 1287
Eco31I	GGTCTC	1 cut(s)	1196
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	2 cut(s)	1276, 1285
Eco57I	CTGAAG	2 cut(s)	246, 261
Eco72I	CACGTG	2 cut(s)	104, 1074
Eco88I	CYCGRG	1 cut(s)	1361
EcoICRI	GAGCTC	2 cut(s)	1276, 1285
EcoO109I	RGGNCCY	1 cut(s)	1005
EcoRI	GAATTC	1 cut(s)	1226
EcoRII	CCWGG	2 cut(s)	361, 451
EcoT14I	CCWWGG	3 cut(s)	303, 341, 837
EcoT38I	GRGCYC	3 cut(s)	970, 1278, 1287
ErhI	CCWWGG	3 cut(s)	303, 341, 837
FaeI	CATG	7 cut(s)	52, 359, 654, 737, 995, 1234, 1244
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	7 cut(s)	48, 355, 650, 733, 991, 1230, 1240
FbaI	TGATCA	2 cut(s)	16, 1068
Fnu4HI	GCNGC	2 cut(s)	23, 324
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	3 cut(s)	970, 1278, 1287
Fsp4HI	GCNGC	2 cut(s)	23, 324
FspBI	CTAG	4 cut(s)	171, 390, 491, 509
GluI	GCNGC	2 cut(s)	23, 324
GsaI	CCCAGC	1 cut(s)	1059
HaeIII	GGCC	4 cut(s)	60, 663, 1007, 1078
Hin1II	CATG	7 cut(s)	52, 359, 654, 737, 995, 1234, 1244
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	5 cut(s)	337, 431, 437, 518, 982
HpaI	GTTAAC	1 cut(s)	586
HphI	GGTGA	3 cut(s)	527, 793, 1126
Hpy166II	GTNNAC	2 cut(s)	586, 1084
Hpy188I	TCNGA	6 cut(s)	414, 430, 436, 523, 1280, 1327
Hpy188III	TCNNGA	7 cut(s)	461, 472, 509, 845, 855, 1241, 1368
Hpy8I	GTNNAC	2 cut(s)	586, 1084
HpyCH4III	ACNGT	1 cut(s)	1300
HpyCH4IV	ACGT	2 cut(s)	103, 1073
HpyCH4V	TGCA	2 cut(s)	143, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	848, 1004, 1282
HpyF3I	CTNAG	5 cut(s)	411, 759, 826, 1119, 1277
HpySE526I	ACGT	2 cut(s)	103, 1073
Hsp92II	CATG	7 cut(s)	52, 359, 654, 737, 995, 1234, 1244
Ksp22I	TGATCA	2 cut(s)	16, 1068
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
LguI	GCTCTTC	1 cut(s)	1172
LmnI	GCTCC	2 cut(s)	499, 973
Lsp1109I	GCAGC	2 cut(s)	34, 310
LweI	GCATC	2 cut(s)	387, 554
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	4 cut(s)	171, 390, 491, 509
MaeII	ACGT	2 cut(s)	103, 1073
MaeIII	GTNAC	2 cut(s)	1114, 1219
MalI	GATC	6 cut(s)	18, 347, 470, 621, 1070, 1092
MboI	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
MboII	GAAGA	9 cut(s)	28, 449, 892, 914, 977, 1189, 1207, 1316, 1358
MhlI	GDGCHC	3 cut(s)	970, 1278, 1287
MlsI	TGGCCA	1 cut(s)	1078
MluNI	TGGCCA	1 cut(s)	1078
MlyI	GAGTC	1 cut(s)	527
Mox20I	TGGCCA	1 cut(s)	1078
MscI	TGGCCA	1 cut(s)	1078
MseI	TTAA	4 cut(s)	122, 585, 753, 1331
Msp20I	TGGCCA	1 cut(s)	1078
MspR9I	CCNGG	2 cut(s)	363, 453
MvaI	CCWGG	2 cut(s)	363, 453
MwoI	GCNNNNNNNGC	3 cut(s)	848, 1004, 1282
NdeII	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
NlaIII	CATG	7 cut(s)	52, 359, 654, 737, 995, 1234, 1244
NlaIV	GGNNCC	3 cut(s)	969, 1006, 1062
NmuCI	GTSAC	2 cut(s)	1114, 1219
PagI	TCATGA	1 cut(s)	1240
PaqCI	CACCTGC	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	1172
PfeI	GAWTC	4 cut(s)	337, 431, 437, 982
PkrI	GCNGC	2 cut(s)	24, 325
PleI	GAGTC	1 cut(s)	526
PmaCI	CACGTG	2 cut(s)	104, 1074
PmlI	CACGTG	2 cut(s)	104, 1074
PpsI	GAGTC	1 cut(s)	526
Ppu21I	YACGTR	2 cut(s)	104, 1074
PsiI	TTATAA	1 cut(s)	956
Psp124BI	GAGCTC	2 cut(s)	1278, 1287
Psp6I	CCWGG	2 cut(s)	361, 451
PspCI	CACGTG	2 cut(s)	104, 1074
PspFI	CCCAGC	1 cut(s)	1055
PspGI	CCWGG	2 cut(s)	361, 451
PspN4I	GGNNCC	3 cut(s)	969, 1006, 1062
PspPI	GGNCC	3 cut(s)	359, 662, 1005
RsaI	GTAC	3 cut(s)	404, 732, 1085
RsaNI	GTAC	3 cut(s)	403, 731, 1084
SacI	GAGCTC	2 cut(s)	1278, 1287
SapI	GCTCTTC	1 cut(s)	1172
SaqAI	TTAA	4 cut(s)	122, 585, 753, 1331
SatI	GCNGC	2 cut(s)	23, 324
Sau3AI	GATC	6 cut(s)	16, 345, 468, 619, 1068, 1090
Sau96I	GGNCC	3 cut(s)	359, 662, 1005
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	363, 453
SduI	GDGCHC	3 cut(s)	970, 1278, 1287
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	387, 554
SfcI	CTRYAG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	3 cut(s)	54, 845, 1271
SmoI	CTYRAG	3 cut(s)	54, 845, 1271
SpeI	ACTAGT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	400, 419
SspMI	CTAG	4 cut(s)	171, 390, 491, 509
SstI	GAGCTC	2 cut(s)	1278, 1287
StyD4I	CCNGG	2 cut(s)	361, 451
StyI	CCWWGG	3 cut(s)	303, 341, 837
TaaI	ACNGT	1 cut(s)	1300
TaiI	ACGT	2 cut(s)	106, 1076
TaqI	TCGA	1 cut(s)	856
TaqII	GACCGA	1 cut(s)	1226
TatI	WGTACW	1 cut(s)	730
TfiI	GAWTC	4 cut(s)	337, 431, 437, 982
Tru1I	TTAA	4 cut(s)	122, 585, 753, 1331
Tru9I	TTAA	4 cut(s)	122, 585, 753, 1331
TscAI	CASTG	3 cut(s)	817, 1086, 1195
TseFI	GTSAC	2 cut(s)	1114, 1219
TseI	GCWGC	2 cut(s)	22, 323
Tsp45I	GTSAC	2 cut(s)	1114, 1219
TspRI	CASTG	3 cut(s)	817, 1086, 1195
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	212, 1226
XbaI	TCTAGA	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1071
XspI	CTAG	4 cut(s)	171, 390, 491, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.