Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Forward (+)

33392637 .. 33403514

Gene Structure 10878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2988 bp

ATGGCTTGTTCATCCGAAAGATGGATTGATCGGTTGCAGTTCTCCTCATTGTTTGCGCCTCCCCCGCAAGACGCTCCAAGACGAAAGGCTCAAGTCACGGCCTATGTGGAGTACTTTGGTCAGTTTACATCAGAACAGTTTCCGGAGGATATTTCTGAGCTGATCCGTAATCGCTACCCATCTGAGGTGAAGCGTCTCTTTGACGATGTGTTAGCTATGTTTGTGCTCCATCATCCCGAGCACGGGCATGCTGTTGTCCTTCCCATCATTTCATGTATCATTGATGGCACTCTGCCCTATGAAAGGACTAGTCCACCATTTGCTTCTTTCATATCCTTAGTCTGCCCAAGCAGTGAGAATGAGTACTCTGAGCAGTGGGCCCTGGCATGTGGGGAGATTTTACGAATCTTAACTCATTACAATCGCCCAATATACAAGGCGGAACAACAGAGTTGTGAAACAGAAAGAAGCAGTAGTGGCAGCCATGCTACAACAAGCGACTCTGTTGATAGTGAATCCAGCCATATACCCTTAGTACAGCAAGAGAGGAAACCTATAAGACCTTTGTCTCCCTGGATCACTGATATATTGCTTGCTGCACCTCTGGGTATCAGAAGTGATTACTTCCGCTGGTGCAGTGGAGTTATGGGGAAATATGCTGCAGGAGAACTGAAGCCACCATCAACTGCTTCTTCTCGTGGATCTGGAAAGCATCCTCAACTCATGCCATCGACTCCAAGGTGGGCTGTTGCAAATGGTGCTGGGGTCATATTAAGTGTTTGTGATGAGGAAGTTTCTCGTTATGAAACTGTTACATTAACAGCAGTAGCTGTCCCTGCCCTTCTACTTCCTCCTCCAACAACAGCTTTGGATGAGCATCTAGTGGCAGGGCTACCAGCTCTCGAGCCGTATGCACGTTTATTTCACAGGTATTATGCTATTGCTACTCCAAGTGCTACCCAAAGACTTCTTCTTGGACTTCTAGAAGCACCACCATCATGGGCTCCCGATGCACTTGATGCAGCTGTACAGCTTGTGGAACTTCTTCGCGCTGCTGAAGATTATGCATCTGGAATAAGGCTTCCAAGGAACTGGATGCATTTGCATTTCTTGCGTGCAATTGGGACTGCAATGTCCATGAGAGCTGGTATAGCAGCTGATGCTGCAGCAGCTTTACTTTTCCGGATACTCTCACAACCTGCATTGCTTTTTCCTCCACTGAGACAAGTTGAGGGAGTTGATGTTCAACATGAGCCTTTGGGTGGCTATGTCTCAAGCTACAGGAAGCAGATAGAAGTTCCTGTGGCCGAAGCAACAATTGAAGCTACTGCCCAAGGGATTGCTTCTATGCTCTGTGCCCATGGACCTGAGGTTGAATGGAGAATCTGTACCATATGGGAAGCTGCCTATGGTCTAATTCCTTTAAGCTCCTCGGCGGTTGACCTTCCTGAGATCATTGTTGCCACTCCATTACAGCCTCCAATATTATCCTGGAATCTGTATATACCCCTCCTTAAGGTCTTGGAATATCTTCCTCGTGGAAGTCCGTCTGAAGCATGTCTTATGAAGATATTTGTTGCCACAGTTGAAGCGATTCTTCAAAGGACATTTCCACCTGAGTCCTCAAGAGAGCAGAACAGAAAAACAAGATACCTTTTCGGCATAGGGTCTGCCTCAAAAAACCTGGCTGTGGCAGAGCTTCGGACAATGGTTCATTCACTATTCTTAGAATCATGTGCATCTGTAGAGCTTGCTTCACGTCTACTGTTTGTTGTGCTAACTGTATGTGTTAGTCATGAAGCTCAGTCCAGTGGGAGTAAGAAAGCACGAGTTGAAGAAAGCTACCCACTTGATGAATGCACTGAGGAATCACGAGAAATGTCTGAAAAGCAGAGAGACAGGACAAGTAAAAAAACCAAAAAACAAGGACCTGTAGCAGCATTTGACTCTTATGTTCTAGCTGCTGTTTGTGCTCTTGCCTGTGAGCTTCAGTTGTTCCCTTTGGTTTCAAGGGCGAGCAACCATTCACATGCTAAAGATGCAAAACATATGGCAAAGCCTGCCAAACCAATTGGACCTGCTAGTTCTTACAAAAAAATAAATGGGTCTACTAATGAGTTTCAAATTAGCGTGGACTCAGCAATGTGCCACACCCGCAGAATATTGGCCATTTTGGAGGCACTGTTTTTACTGAAACCATCTTCTGTTGGCACCTCCTGGAGTTACAGTTCAAATGAGATAGTTGCAGCAGCTATGGTTGCGGCTCATGTATCTGAATTATTTAGATGGTCAAAGGCTTGTATGCATGCACTCTCTGTCTTGATGCGCTGCAAGTGGGATAATGAAATTTCCTCCAGAGCATCATCACTGTACAACCTCATAGATATTCACAGCAAGGCTGTTGCATCTATTGTTAACAAGGCTGAACCACTGGAAGCACACTTGATGCAAGTGCCAATTTGGAGGGATTCTGCTGTGTGTTCTGAAGGTAGAAAGAGAAGTCATTGTGAAAAGAGTAAATGCATTAATATAGGGCAGTCCTCTGGCTCGCAATTTGAAAATTCAGTGCATTCAGAAACTAGAATCAAATCTGAGAGTGCGTCACATTCTAATGGGGGTTCTGGAAATACATTTGGTAAAGGTGTTGCAAATTTTCCATTAGATGCTTCGGAATTGGCCAACTTCCTTACTATGGACAGGCATATAGGATTTAGTTGCAGTGCACAGGTTCTTCTAAGATCGGTACTGACAGAGAAACAAGAGCTATGTTTCTCAGTTGTCTCACTGTTGTGGCACAAGTTACTTGCGTCTCCTGAAACCCAACCTACTGCAGAAAGCACTTCTGCTCAACAAGGATGGCGGCAGGTAATCTTATGTCTCTTTGTATCATCATCATCGTTGCTGTTGTTATTATTTCCTATTATACTTATTAACTTATTATACTTTATAGTTTCTTTCCCATCAATTGCACTAGTGGAGTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

995

Amino Acids

109.28

Weight (kDa)

6.51

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1132
Acc36I	ACCTGC	3 cut(s)	1207, 2086, 2854
AccB1I	GGYRCC	1 cut(s)	2210
AccI	GTMKAC	2 cut(s)	1762, 2108
AccII	CGCG	1 cut(s)	1050
AccIII	TCCGGA	2 cut(s)	142, 1182
AciI	CCGC	7 cut(s)	65, 440, 628, 1436, 2155, 2261, 2860
AclWI	GGATC	3 cut(s)	157, 584, 709
AcoI	YGGCCR	3 cut(s)	1305, 2166, 2676
AcsI	RAATTY	3 cut(s)	2346, 2560, 2650
AcuI	CTGAAG	5 cut(s)	692, 1077, 1572, 1973, 2505
AfaI	GTAC	7 cut(s)	113, 365, 537, 1029, 1390, 2372, 2745
AfiI	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 243, 303, 1262, 1516, 1690, 2692
AflII	CTTAAG	1 cut(s)	1514
AhlI	ACTAGT	2 cut(s)	308, 2971
AjiI	CACGTC	1 cut(s)	1760
AjnI	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AleI	CACNNNNGTG	1 cut(s)	2788
AloI	GAACNNNNNNTCC	4 cut(s)	1227, 1259, 2212, 2244
Alw21I	GWGCWC	4 cut(s)	228, 243, 1975, 2725
Alw26I	GTCTC	8 cut(s)	200, 573, 1216, 1276, 1890, 2785, 2814, 2882
Alw44I	GTGCAC	1 cut(s)	2721
AlwI	GGATC	3 cut(s)	157, 584, 709
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	2 cut(s)	236, 902
Aor13HI	TCCGGA	2 cut(s)	142, 1182
AoxI	GGCC	5 cut(s)	99, 378, 1305, 2166, 2676
ApaI	GGGCCC	1 cut(s)	382
ApaLI	GTGCAC	1 cut(s)	2721
ApoI	RAATTY	3 cut(s)	2346, 2560, 2650
AseI	ATTAAT	1 cut(s)	2526
Asp700I	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
AspLEI	GCGC	3 cut(s)	58, 1052, 2328
AspS9I	GGNCC	5 cut(s)	378, 379, 1364, 1928, 2075
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	2 cut(s)	236, 902
AvaII	GGWCC	3 cut(s)	1364, 1928, 2075
AxyI	CCTNAGG	1 cut(s)	1368
BaeGI	GKGCMC	3 cut(s)	382, 1360, 2725
BalI	TGGCCA	2 cut(s)	2168, 2678
BanI	GGYRCC	1 cut(s)	2210
BanII	GRGCYC	2 cut(s)	382, 1006
BauI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
Bbv12I	GWGCWC	4 cut(s)	228, 243, 1975, 2725
BceAI	ACGGC	2 cut(s)	114, 892
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BciVI	GTATCC	1 cut(s)	1179
BcoDI	GTCTC	8 cut(s)	200, 573, 1216, 1276, 1890, 2785, 2814, 2882
BcuI	ACTAGT	2 cut(s)	308, 2971
BfaI	CTAG	7 cut(s)	309, 881, 983, 1958, 2082, 2580, 2972
BfmI	CTRYAG	6 cut(s)	660, 1164, 1279, 1743, 1932, 2829
BfrI	CTTAAG	1 cut(s)	1514
BfuAI	ACCTGC	3 cut(s)	1207, 2086, 2854
BfuI	GTATCC	1 cut(s)	1179
BmcAI	AGTACT	2 cut(s)	113, 365
Bme1390I	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
Bme18I	GGWCC	3 cut(s)	1364, 1928, 2075
BmeT110I	CYCGRG	2 cut(s)	236, 902
BmgBI	CACGTC	1 cut(s)	1760
BmgT120I	GGNCC	5 cut(s)	378, 379, 1364, 1928, 2075
BmiI	GGNNCC	3 cut(s)	380, 1005, 2212
BmrFI	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
BoxI	GACNNNNGTC	1 cut(s)	565
BpmI	CTGGAG	2 cut(s)	2239, 2338
BpuEI	CTTGAG	3 cut(s)	75, 1258, 1609
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	7 cut(s)	381, 572, 737, 1085, 1333, 1360, 1431
BsaWI	WCCGGW	2 cut(s)	142, 1182
BsaXI	ACNNNNNCTCC	8 cut(s)	1227, 1257, 1372, 1402, 2168, 2198, 2212, 2242
Bsc4I	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 243, 303, 1262, 1516, 1690, 2692
Bse1I	ACTGG	3 cut(s)	1097, 1809, 2436
Bse21I	CCTNAGG	1 cut(s)	1368
Bse3DI	GCAATG	3 cut(s)	1137, 1202, 2148
Bse8I	GATNNNNATC	1 cut(s)	876
BseAI	TCCGGA	2 cut(s)	142, 1182
BseBI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BseDI	CCNNGG	7 cut(s)	381, 572, 737, 1085, 1333, 1360, 1431
BseGI	GGATG	6 cut(s)	11, 232, 712, 877, 1101, 2861
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 243, 303, 1262, 1516, 1690, 2692
BseMI	GCAATG	3 cut(s)	1137, 1202, 2148
BseNI	ACTGG	3 cut(s)	1097, 1809, 2436
BseRI	GAGGAG	3 cut(s)	34, 843, 1420
BseSI	GKGCMC	3 cut(s)	382, 1360, 2725
BseYI	CCCAGC	1 cut(s)	761
BsgI	GTGCAG	2 cut(s)	582, 655
Bsh1236I	CGCG	1 cut(s)	1050
BshFI	GGCC	5 cut(s)	101, 380, 1307, 2168, 2678
BshNI	GGYRCC	1 cut(s)	2210
BsiHKAI	GWGCWC	4 cut(s)	228, 243, 1975, 2725
BsiHKCI	CYCGRG	2 cut(s)	236, 902
BsiSI	CCGG	2 cut(s)	143, 1183
BslFI	GGGAC	2 cut(s)	818, 1138
BslI	CCNNNNNNNGG	9 cut(s)	21, 184, 242, 243, 303, 1262, 1516, 1690, 2692
BsmAI	GTCTC	8 cut(s)	200, 573, 1216, 1276, 1890, 2785, 2814, 2882
BsmBI	CGTCTC	2 cut(s)	200, 2814
BsmFI	GGGAC	2 cut(s)	818, 1138
BsmI	GAATGC	2 cut(s)	1862, 2569
BsnI	GGCC	5 cut(s)	101, 380, 1307, 2168, 2678
BsoBI	CYCGRG	2 cut(s)	236, 902
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	7 cut(s)	228, 243, 382, 1006, 1360, 1975, 2725
Bsp13I	TCCGGA	2 cut(s)	142, 1182
Bsp1407I	TGTACA	2 cut(s)	1027, 2370
Bsp143I	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
Bsp19I	CCATGG	1 cut(s)	1360
BspACI	CCGC	7 cut(s)	65, 440, 628, 1436, 2155, 2261, 2860
BspANI	GGCC	5 cut(s)	101, 380, 1307, 2168, 2678
BspEI	TCCGGA	2 cut(s)	142, 1182
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	1 cut(s)	1795
BspLI	GGNNCC	3 cut(s)	380, 1005, 2212
BspMAI	CTGCAG	3 cut(s)	664, 1168, 2833
BspMI	ACCTGC	3 cut(s)	1207, 2086, 2854
BspPI	GGATC	3 cut(s)	157, 584, 709
BspT107I	GGYRCC	1 cut(s)	2210
BspTI	CTTAAG	1 cut(s)	1514
BsrDI	GCAATG	3 cut(s)	1137, 1202, 2148
BsrGI	TGTACA	2 cut(s)	1027, 2370
BsrI	ACTGG	3 cut(s)	1097, 1809, 2436
BssECI	CCNNGG	7 cut(s)	381, 572, 737, 1085, 1333, 1360, 1431
BssMI	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
BssSI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
BssT1I	CCWWGG	4 cut(s)	737, 1085, 1333, 1360
Bst2BI	CACGAG	4 cut(s)	696, 1536, 1827, 1872
Bst2UI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
Bst4CI	ACNGT	9 cut(s)	138, 811, 1585, 1767, 1783, 2184, 2228, 2370, 2787
BstAFI	CTTAAG	1 cut(s)	1514
BstAPI	GCANNNNNTGC	5 cut(s)	758, 1019, 1111, 1160, 2060
BstAUI	TGTACA	2 cut(s)	1027, 2370
BstC8I	GCNNGC	8 cut(s)	249, 594, 1116, 1752, 2017, 2061, 2307, 2549
BstDSI	CCRYGG	1 cut(s)	1360
BstENI	CCTNNNNNAGG	2 cut(s)	301, 1514
BstF5I	GGATG	6 cut(s)	11, 232, 712, 877, 1101, 2861
BstFNI	CGCG	1 cut(s)	1050
BstHHI	GCGC	3 cut(s)	58, 1052, 2328
BstKTI	GATC	6 cut(s)	31, 165, 579, 704, 1455, 2741
BstMAI	GTCTC	8 cut(s)	200, 573, 1216, 1276, 1890, 2785, 2814, 2882
BstMBI	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
BstNI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
BstNSI	RCATGY	5 cut(s)	251, 390, 1560, 2033, 2309
BstPAI	GACNNNNGTC	1 cut(s)	565
BstSCI	CCNGG	5 cut(s)	381, 572, 1490, 1683, 2216
BstSFI	CTRYAG	6 cut(s)	660, 1164, 1279, 1743, 1932, 2829
BstSLI	GKGCMC	3 cut(s)	382, 1360, 2725
BstUI	CGCG	1 cut(s)	1050
BstX2I	RGATCY	1 cut(s)	701
BstXI	CCANNNNNNTGG	2 cut(s)	999, 1092
BstYI	RGATCY	1 cut(s)	701
Bsu36I	CCTNAGG	1 cut(s)	1368
BsuI	GTATCC	1 cut(s)	1179
BsuRI	GGCC	5 cut(s)	101, 380, 1307, 2168, 2678
BtgI	CCRYGG	1 cut(s)	1360
BtrI	CACGTC	1 cut(s)	1760
BtsCI	GGATG	6 cut(s)	11, 232, 712, 877, 1101, 2861
BtsI	GCAGTG	4 cut(s)	358, 380, 643, 2725
BveI	ACCTGC	3 cut(s)	1207, 2086, 2854
Cac8I	GCNNGC	8 cut(s)	249, 594, 1116, 1752, 2017, 2061, 2307, 2549
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	1 cut(s)	1795
CfoI	GCGC	3 cut(s)	58, 1052, 2328
Cfr13I	GGNCC	5 cut(s)	378, 379, 1364, 1928, 2075
CseI	GACGC	4 cut(s)	80, 182, 2589, 2796
Csp6I	GTAC	7 cut(s)	112, 364, 536, 1028, 1389, 2371, 2744
CviQI	GTAC	7 cut(s)	112, 364, 536, 1028, 1389, 2371, 2744
DpnI	GATC	6 cut(s)	30, 164, 578, 703, 1454, 2740
DpnII	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
DrdI	GACNNNNNNGTC	1 cut(s)	1132
DseDI	GACNNNNNNGTC	1 cut(s)	1132
EaeI	YGGCCR	3 cut(s)	1305, 2166, 2676
EciI	GGCGGA	1 cut(s)	455
Eco130I	CCWWGG	4 cut(s)	737, 1085, 1333, 1360
Eco24I	GRGCYC	2 cut(s)	382, 1006
Eco47I	GGWCC	3 cut(s)	1364, 1928, 2075
Eco57I	CTGAAG	5 cut(s)	692, 1077, 1572, 1973, 2505
Eco81I	CCTNAGG	1 cut(s)	1368
Eco88I	CYCGRG	2 cut(s)	236, 902
EcoNI	CCTNNNNNAGG	2 cut(s)	301, 1514
EcoO109I	RGGNCCY	2 cut(s)	379, 1928
EcoRII	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
EcoT14I	CCWWGG	4 cut(s)	737, 1085, 1333, 1360
EcoT22I	ATGCAT	4 cut(s)	1069, 1101, 2307, 2525
EcoT38I	GRGCYC	2 cut(s)	382, 1006
ErhI	CCWWGG	4 cut(s)	737, 1085, 1333, 1360
Esp3I	CGTCTC	2 cut(s)	200, 2814
FalI	AAGNNNNNCTT	6 cut(s)	182, 214, 1545, 1577, 1581, 1613
FaqI	GGGAC	2 cut(s)	818, 1138
FauI	CCCGC	2 cut(s)	72, 2162
FauNDI	CATATG	2 cut(s)	1394, 2049
FblI	GTMKAC	2 cut(s)	1762, 2108
FokI	GGATG	5 cut(s)	219, 699, 884, 1108, 2868
FriOI	GRGCYC	2 cut(s)	382, 1006
FspBI	CTAG	7 cut(s)	309, 881, 983, 1958, 2082, 2580, 2972
GlaI	GCGC	3 cut(s)	57, 1051, 2327
GsaI	CCCAGC	1 cut(s)	765
GsuI	CTGGAG	2 cut(s)	2239, 2338
HaeIII	GGCC	5 cut(s)	101, 380, 1307, 2168, 2678
HapII	CCGG	2 cut(s)	143, 1183
HgaI	GACGC	4 cut(s)	80, 182, 2589, 2796
HhaI	GCGC	3 cut(s)	58, 1052, 2328
Hin6I	GCGC	3 cut(s)	56, 1050, 2326
HinP1I	GCGC	3 cut(s)	56, 1050, 2326
HincII	GTYRAC	2 cut(s)	1441, 2416
HindII	GTYRAC	2 cut(s)	1441, 2416
HpaI	GTTAAC	1 cut(s)	2416
HpaII	CCGG	2 cut(s)	143, 1183
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	8 cut(s)	126, 314, 1441, 1763, 2109, 2134, 2416, 2723
Hpy8I	GTNNAC	8 cut(s)	126, 314, 1441, 1763, 2109, 2134, 2416, 2723
HpyAV	CCTTC	4 cut(s)	269, 851, 1454, 2480
HpyCH4III	ACNGT	9 cut(s)	138, 811, 1585, 1767, 1783, 2184, 2228, 2370, 2787
HpyCH4IV	ACGT	2 cut(s)	916, 1759
HpySE526I	ACGT	2 cut(s)	916, 1759
HspAI	GCGC	3 cut(s)	56, 1050, 2326
Kpn2I	TCCGGA	2 cut(s)	142, 1182
KspAI	GTTAAC	1 cut(s)	2416
Kzo9I	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
LmnI	GCTCC	4 cut(s)	79, 231, 1009, 1433
MaeI	CTAG	7 cut(s)	309, 881, 983, 1958, 2082, 2580, 2972
MaeII	ACGT	2 cut(s)	916, 1759
MaeIII	GTNAC	5 cut(s)	94, 811, 2222, 2601, 2799
MalI	GATC	6 cut(s)	30, 164, 578, 703, 1454, 2740
MboI	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
MfeI	CAATTG	4 cut(s)	1119, 1317, 2070, 2964
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	7 cut(s)	228, 243, 382, 1006, 1360, 1975, 2725
MlsI	TGGCCA	2 cut(s)	2168, 2678
MluNI	TGGCCA	2 cut(s)	2168, 2678
MlyI	GAGTC	6 cut(s)	494, 727, 1628, 1940, 2129, 2987
MmeI	TCCRAC	1 cut(s)	881
Mox20I	TGGCCA	2 cut(s)	2168, 2678
Mph1103I	ATGCAT	4 cut(s)	1069, 1101, 2307, 2525
MroI	TCCGGA	2 cut(s)	142, 1182
MroXI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
MscI	TGGCCA	2 cut(s)	2168, 2678
MseI	TTAA	8 cut(s)	410, 773, 818, 1424, 1515, 2415, 2526, 2931
MslI	CAYNNNNRTG	5 cut(s)	246, 997, 2028, 2610, 2788
Msp20I	TGGCCA	2 cut(s)	2168, 2678
MspA1I	CMGCKG	3 cut(s)	630, 1025, 1157
MspCI	CTTAAG	1 cut(s)	1514
MspI	CCGG	2 cut(s)	143, 1183
MspR9I	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
MunI	CAATTG	4 cut(s)	1119, 1317, 2070, 2964
Mva1269I	GAATGC	2 cut(s)	1862, 2569
MvaI	CCWGG	5 cut(s)	383, 574, 1492, 1685, 2218
MvnI	CGCG	1 cut(s)	1050
NcoI	CCATGG	1 cut(s)	1360
NdeI	CATATG	2 cut(s)	1394, 2049
NdeII	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
NlaIV	GGNNCC	3 cut(s)	380, 1005, 2212
NmeAIII	GCCGAG	1 cut(s)	1412
NmuCI	GTSAC	2 cut(s)	94, 2601
NsiI	ATGCAT	4 cut(s)	1069, 1101, 2307, 2525
NspI	RCATGY	5 cut(s)	251, 390, 1560, 2033, 2309
OliI	CACNNNNGTG	1 cut(s)	2788
PaeI	GCATGC	2 cut(s)	251, 2309
PaeR7I	CTCGAG	1 cut(s)	902
PagI	TCATGA	1 cut(s)	1795
PctI	GAATGC	2 cut(s)	1862, 2569
PdmI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
PfeI	GAWTC	9 cut(s)	405, 515, 1383, 1495, 1594, 1730, 1868, 2468, 2583
PfoI	TCCNGGA	2 cut(s)	1490, 2216
PleI	GAGTC	6 cut(s)	494, 727, 1627, 1940, 2129, 2986
PpsI	GAGTC	6 cut(s)	494, 727, 1627, 1940, 2129, 2986
PpuMI	RGGWCCY	1 cut(s)	1928
PshAI	GACNNNNGTC	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	2526
Psp5II	RGGWCCY	1 cut(s)	1928
Psp6I	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
PspFI	CCCAGC	1 cut(s)	761
PspGI	CCWGG	5 cut(s)	381, 572, 1490, 1683, 2216
PspN4I	GGNNCC	3 cut(s)	380, 1005, 2212
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	5 cut(s)	378, 379, 1364, 1928, 2075
PspPPI	RGGWCCY	1 cut(s)	1928
PstI	CTGCAG	3 cut(s)	664, 1168, 2833
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	2 cut(s)	1025, 1157
RsaI	GTAC	7 cut(s)	113, 365, 537, 1029, 1390, 2372, 2745
RsaNI	GTAC	7 cut(s)	112, 364, 536, 1028, 1389, 2371, 2744
RseI	CAYNNNNRTG	5 cut(s)	246, 997, 2028, 2610, 2788
SaqAI	TTAA	8 cut(s)	410, 773, 818, 1424, 1515, 2415, 2526, 2931
Sau3AI	GATC	6 cut(s)	28, 162, 576, 701, 1452, 2738
Sau96I	GGNCC	5 cut(s)	378, 379, 1364, 1928, 2075
ScaI	AGTACT	2 cut(s)	113, 365
SchI	GAGTC	6 cut(s)	494, 727, 1628, 1940, 2129, 2987
ScrFI	CCNGG	5 cut(s)	383, 574, 1492, 1685, 2218
SduI	GDGCHC	7 cut(s)	228, 243, 382, 1006, 1360, 1975, 2725
SfcI	CTRYAG	6 cut(s)	660, 1164, 1279, 1743, 1932, 2829
Sfr274I	CTCGAG	1 cut(s)	902
SinI	GGWCC	3 cut(s)	1364, 1928, 2075
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	5 cut(s)	246, 997, 2028, 2610, 2788
SmlI	CTYRAG	5 cut(s)	90, 902, 1273, 1514, 1624
SmoI	CTYRAG	5 cut(s)	90, 902, 1273, 1514, 1624
SpeI	ACTAGT	2 cut(s)	308, 2971
SphI	GCATGC	2 cut(s)	251, 2309
SsiI	CCGC	7 cut(s)	65, 440, 628, 1436, 2155, 2261, 2860
SspI	AATATT	2 cut(s)	1485, 2163
SspMI	CTAG	7 cut(s)	309, 881, 983, 1958, 2082, 2580, 2972
StyD4I	CCNGG	5 cut(s)	381, 572, 1490, 1683, 2216
StyI	CCWWGG	4 cut(s)	737, 1085, 1333, 1360
TaaI	ACNGT	9 cut(s)	138, 811, 1585, 1767, 1783, 2184, 2228, 2370, 2787
TaiI	ACGT	2 cut(s)	919, 1762
TaqI	TCGA	2 cut(s)	731, 903
TatI	WGTACW	5 cut(s)	111, 363, 535, 1027, 2370
TauI	GCSGC	2 cut(s)	2264, 2863
TfiI	GAWTC	9 cut(s)	405, 515, 1383, 1495, 1594, 1730, 1868, 2468, 2583
Tru1I	TTAA	8 cut(s)	410, 773, 818, 1424, 1515, 2415, 2526, 2931
Tru9I	TTAA	8 cut(s)	410, 773, 818, 1424, 1515, 2415, 2526, 2931
TseFI	GTSAC	2 cut(s)	94, 2601
Tsp45I	GTSAC	2 cut(s)	94, 2601
TspDTI	ATGAA	9 cut(s)	261, 315, 319, 819, 1580, 1703, 1812, 1869, 2358
TspGWI	ACGGA	2 cut(s)	155, 1536
Vha464I	CTTAAG	1 cut(s)	1514
VneI	GTGCAC	1 cut(s)	2721
VpaK11BI	GGWCC	3 cut(s)	1364, 1928, 2075
VspI	ATTAAT	1 cut(s)	2526
XagI	CCTNNNNNAGG	2 cut(s)	301, 1514
XapI	RAATTY	3 cut(s)	2346, 2560, 2650
XbaI	TCTAGA	1 cut(s)	982
XceI	RCATGY	5 cut(s)	251, 390, 1560, 2033, 2309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1488
XhoI	CTCGAG	1 cut(s)	902
XmiI	GTMKAC	2 cut(s)	1762, 2108
XmnI	GAANNNNTTC	4 cut(s)	138, 1044, 1530, 1593
XspI	CTAG	7 cut(s)	309, 881, 983, 1958, 2082, 2580, 2972
ZrmI	AGTACT	2 cut(s)	113, 365
Zsp2I	ATGCAT	4 cut(s)	1069, 1101, 2307, 2525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.