Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041613.1

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Forward (+)

58 .. 1984

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgcgctgcaagtgggataatgaaatttcctccagagcatcatcactgtacaacctcatagatattcacagcaaggctgttgcatctattgttaacaaggctgaaccactggaagcacacttgatgcaagtgccaatttggagggattctgctgtgtgttctgaaggtagaaagagaagtcattgtgaaaagagtaaatgcattaatatagggcagtcctctggctcgcaatttgaaaattcagtgcattcagaaactagaatcaaatctgagagtgcgtcacattctaatgggggttctggaaatacatttggtaaaggtgttgcaaattttccattagatgcttcggaattggccaacttccttactatggacaggcatataggatttagttgcagtgcacaggttcttctaagatcggtactgacagagaaacaagagctatgtttctcagttgtctcactgttgtggcacaagttacttgcgtctcctgaaacccaacctaccgcagaaagcacttctgctcaacaaggatggcggcaggtcgttgatgcattatgcaacgttgtatcagcaacaccaacgaaagcagccacagcagttgttctacaggcggagagggaattgcagccttggattgccaaagatgatgatcaaggtcagaagatgtggagaatcaaccagaggattgtgaaattgattgtagagttgatgagaattcatgatagcccagaatcattggtaattttgtctagcgcctcagatctacttctgcgtgccactgatgggatgcttgttgatggagaagcttgcactttaccccagctggaggtaacagttagctacattagtgtgccttatgacctatgtcgactaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.25

Weight (kDa)

6.08

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	871
AciI	CCGC	3 cut(s)	507, 538, 614
AclI	AACGTT	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	4 cut(s)	24, 238, 328, 717
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	50, 423
AfiI	CCNNNNNNNGG	3 cut(s)	370, 786, 829
AgsI	TTSAA	1 cut(s)	236
AleI	CACNNNNGTG	1 cut(s)	466
AluBI	AGCT	4 cut(s)	442, 809, 826, 843
AluI	AGCT	4 cut(s)	442, 809, 826, 843
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	463, 492
Alw44I	GTGCAC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	354
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	6, 590, 628
ApoI	RAATTY	4 cut(s)	24, 238, 328, 717
AseI	ATTAAT	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	6, 758
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	602, 640
BccI	CCATC	3 cut(s)	528, 779, 794
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	463, 492
BfaI	CTAG	2 cut(s)	258, 753
BfmI	CTRYAG	1 cut(s)	608
BfoI	RGCGCY	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	4 cut(s)	7, 539, 591, 629
BlsI	GCNGC	4 cut(s)	8, 540, 592, 630
BmsI	GCATC	6 cut(s)	47, 92, 114, 331, 541, 780
BoxI	GACNNNNGTC	1 cut(s)	867
BpmI	CTGGAG	2 cut(s)	16, 848
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 786, 829
Bse1I	ACTGG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	2 cut(s)	539, 795
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	370, 786, 829
BseMII	CTCAG	3 cut(s)	261, 465, 774
BseNI	ACTGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	602, 640
BseYI	CCCAGC	1 cut(s)	822
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	403
BslI	CCNNNNNNNGG	3 cut(s)	370, 786, 829
BsmAI	GTCTC	2 cut(s)	463, 492
BsmBI	CGTCTC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	416, 652, 763
BspACI	CCGC	3 cut(s)	507, 538, 614
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	3 cut(s)	262, 464, 773
BspHI	TCATGA	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	3 cut(s)	416, 652, 763
BssT1I	CCWWGG	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	48, 465, 838
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	227, 777, 811
BstDEI	CTNAG	4 cut(s)	270, 413, 451, 760
BstF5I	GGATG	2 cut(s)	539, 795
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	2 cut(s)	6, 758
BstKTI	GATC	3 cut(s)	419, 655, 766
BstMAI	GTCTC	2 cut(s)	463, 492
BstMBI	GATC	3 cut(s)	416, 652, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstPAI	GACNNNNGTC	1 cut(s)	867
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	602, 640
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	539, 795
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	6 cut(s)	44, 107, 249, 403, 461, 780
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	227, 777, 811
CciI	TCATGA	1 cut(s)	721
CfoI	GCGC	2 cut(s)	6, 758
CseI	GACGC	2 cut(s)	267, 474
Csp6I	GTAC	2 cut(s)	49, 422
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviAII	CATG	1 cut(s)	722
CviQI	GTAC	2 cut(s)	49, 422
DdeI	CTNAG	4 cut(s)	270, 413, 451, 760
DpnI	GATC	3 cut(s)	418, 654, 765
DpnII	GATC	3 cut(s)	416, 652, 763
EaeI	YGGCCR	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	632
EcoT22I	ATGCAT	2 cut(s)	203, 556
ErhI	CCWWGG	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	1 cut(s)	725
FatI	CATG	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	871
Fnu4HI	GCNGC	4 cut(s)	7, 539, 591, 629
FokI	GGATG	2 cut(s)	546, 802
Fsp4HI	GCNGC	4 cut(s)	7, 539, 591, 629
FspBI	CTAG	2 cut(s)	258, 753
GlaI	GCGC	2 cut(s)	5, 757
GluI	GCNGC	4 cut(s)	7, 539, 591, 629
GsaI	CCCAGC	1 cut(s)	826
GsuI	CTGGAG	2 cut(s)	16, 848
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	356
HgaI	GACGC	2 cut(s)	267, 474
HhaI	GCGC	2 cut(s)	6, 758
Hin1II	CATG	1 cut(s)	725
Hin6I	GCGC	2 cut(s)	4, 756
HinP1I	GCGC	2 cut(s)	4, 756
HincII	GTYRAC	2 cut(s)	94, 872
HindII	GTYRAC	2 cut(s)	94, 872
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	4 cut(s)	146, 261, 675, 734
HpaI	GTTAAC	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	94, 401, 872
Hpy188I	TCNGA	6 cut(s)	163, 253, 271, 349, 663, 763
Hpy188III	TCNNGA	4 cut(s)	33, 300, 491, 722
Hpy8I	GTNNAC	3 cut(s)	94, 401, 872
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	48, 465, 838
HpyCH4IV	ACGT	1 cut(s)	564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	4 cut(s)	270, 413, 451, 760
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	725
HspAI	GCGC	2 cut(s)	4, 756
Ksp22I	TGATCA	1 cut(s)	652
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	416, 652, 763
Lsp1109I	GCAGC	2 cut(s)	602, 640
LweI	GCATC	6 cut(s)	47, 92, 114, 331, 541, 780
MaeI	CTAG	2 cut(s)	258, 753
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	3 cut(s)	279, 477, 832
MalI	GATC	3 cut(s)	418, 654, 765
MboI	GATC	3 cut(s)	416, 652, 763
MboII	GAAGA	2 cut(s)	401, 676
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	356
MluNI	TGGCCA	1 cut(s)	356
MnlI	CCTC	8 cut(s)	40, 65, 135, 229, 612, 678, 769, 823
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	2 cut(s)	203, 556
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	2 cut(s)	93, 204
MslI	CAYNNNNRTG	3 cut(s)	288, 466, 851
Msp20I	TGGCCA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	826
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeII	GATC	3 cut(s)	416, 652, 763
NlaIII	CATG	1 cut(s)	725
NmuCI	GTSAC	1 cut(s)	279
NsiI	ATGCAT	2 cut(s)	203, 556
OliI	CACNNNNGTG	1 cut(s)	466
PagI	TCATGA	1 cut(s)	721
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	146, 261, 675, 734
PkrI	GCNGC	4 cut(s)	8, 540, 592, 630
PshAI	GACNNNNGTC	1 cut(s)	867
PshBI	ATTAAT	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	564
PspFI	CCCAGC	1 cut(s)	822
PsuI	RGATCY	1 cut(s)	763
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	2 cut(s)	50, 423
RsaNI	GTAC	2 cut(s)	49, 422
RseI	CAYNNNNRTG	3 cut(s)	288, 466, 851
SalI	GTCGAC	1 cut(s)	870
SaqAI	TTAA	2 cut(s)	93, 204
SatI	GCNGC	4 cut(s)	7, 539, 591, 629
Sau3AI	GATC	3 cut(s)	416, 652, 763
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	6 cut(s)	47, 92, 114, 331, 541, 780
SfcI	CTRYAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	3 cut(s)	288, 466, 851
SsiI	CCGC	3 cut(s)	507, 538, 614
SspMI	CTAG	2 cut(s)	258, 753
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	48, 465, 838
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	871
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	4 cut(s)	146, 261, 675, 734
Tru1I	TTAA	2 cut(s)	93, 204
Tru9I	TTAA	2 cut(s)	93, 204
TscAI	CASTG	6 cut(s)	51, 114, 249, 403, 468, 787
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	3 cut(s)	6, 590, 628
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	36, 710
TspRI	CASTG	6 cut(s)	51, 114, 249, 403, 468, 787
VneI	GTGCAC	1 cut(s)	399
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	4 cut(s)	24, 238, 328, 717
XmiI	GTMKAC	1 cut(s)	871
XspI	CTAG	2 cut(s)	258, 753
Zsp2I	ATGCAT	2 cut(s)	203, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.