Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041918.1

Orthogroup ID

OG0003857

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1009

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ctactggaagcaactgctagagcagttaagcctgtgctggagtggggagaatctgggcttgcagtcgcagatggcctttcgaacctgctaaagtgtcgtctgtcagctaccatccgatgcctttctcatcctagtgcacacgttcgagctttgagcgtatcagttcttcgtgatattttgcaagccagttcaattagacctaaccctaatccagtgcaaataaatggtatccatggtccttcctataagtattttaacctagatgttattgattggcaagctgatattgaaaagtgcttgacatgggaagctcatagccgacttgcgaccggaatgcctattaaatttctggatactgctgccaaggaattgggttgtactatttctgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009791 GO:0009889 GO:0009908 GO:0010035 GO:0010218 GO:0010378 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048578 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0080167 GO:0090567 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.13

Weight (kDa)

7.88

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22770
fragaria_vesca	FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030 FvH4_2g13030
malus_domestica	MD05G1033400.v1.1 MD10G1034200.v1.1
prunus_persica	Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1 Prupe.8G040600_v2.0.a1
pyrus_communis	pycom05g02420 pycom10g02270
rosa_chinensis	RchiOBHm_Chr6g0274251
rosa_laevigata	RLG00000013569
rosa_multiflora	Rmu_sc0005132.1_g000012 Rmu_sc0007258.1_g000001 Rmu_sc0041613.1_g000001 Rmu_sc0041918.1_g000001
rosa_roxburghii	Rroxscaffold_7G00194400
rosa_rugosa	Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080200 Rorug06G0080300 Rorug06G0080400
rosa_samantha	Rh6AG195200 Rh6BG199600 Rh6CG199700 Rh6DG191100
rosa_wichuraiana	Rw6G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	192, 290
AluBI	AGCT	4 cut(s)	107, 149, 281, 311
AluI	AGCT	4 cut(s)	107, 149, 281, 311
Alw21I	GWGCWC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	73
ApaLI	GTGCAC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	236
AsuII	TTCGAA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	65, 119
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciVI	GTATCC	2 cut(s)	239, 346
BfaI	CTAG	3 cut(s)	18, 132, 260
BfuAI	ACCTGC	1 cut(s)	93
BfuI	GTATCC	2 cut(s)	239, 346
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	232, 363
BsaWI	WCCGGW	1 cut(s)	329
Bse1I	ACTGG	3 cut(s)	9, 186, 212
BseDI	CCNNGG	2 cut(s)	232, 363
BseGI	GGATG	2 cut(s)	111, 127
BseNI	ACTGG	3 cut(s)	9, 186, 212
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	232
BspANI	GGCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	9, 186, 212
BssECI	CCNNGG	2 cut(s)	232, 363
BssT1I	CCWWGG	2 cut(s)	232, 363
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	60, 183, 279
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	111, 127
BstMCI	CGRYCG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuI	GTATCC	2 cut(s)	239, 346
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	111, 127
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	60, 183, 279
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	2 cut(s)	233, 303
CviJI	RGCY	9 cut(s)	31, 58, 75, 107, 149, 185, 281, 311, 318
CviKI_1	RGCY	9 cut(s)	31, 58, 75, 107, 149, 185, 281, 311, 318
CviQI	GTAC	1 cut(s)	378
Eco130I	CCWWGG	2 cut(s)	232, 363
Eco47I	GGWCC	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	232, 363
ErhI	CCWWGG	2 cut(s)	232, 363
FaeI	CATG	2 cut(s)	236, 306
FaiI	YATR	5 cut(s)	234, 246, 304, 315, 391
FatI	CATG	2 cut(s)	232, 302
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	98, 114
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	18, 132, 260
GluI	GCNGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	236, 306
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	2 cut(s)	170, 350
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	62, 137, 181, 217
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	236, 306
LpnPI	CCDG	8 cut(s)	23, 39, 45, 98, 199, 225, 335, 343
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	3 cut(s)	18, 132, 260
MaeII	ACGT	1 cut(s)	141
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	192, 344, 368
MseI	TTAA	3 cut(s)	27, 255, 342
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	232
NlaIII	CATG	2 cut(s)	236, 306
NspV	TTCGAA	1 cut(s)	80
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	236
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	27, 255, 342
SatI	GCNGC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	8 cut(s)	87, 109, 144, 151, 202, 261, 283, 313
SfaNI	GCATC	1 cut(s)	107
SfuI	TTCGAA	1 cut(s)	80
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	192, 344, 368
SspMI	CTAG	3 cut(s)	18, 132, 260
StyI	CCWWGG	2 cut(s)	232, 363
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	80, 145
TasI	AATT	3 cut(s)	192, 344, 368
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	3 cut(s)	27, 255, 342
Tru9I	TTAA	3 cut(s)	27, 255, 342
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	359
TspRI	CASTG	1 cut(s)	219
VneI	GTGCAC	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	344
XspI	CTAG	3 cut(s)	18, 132, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.