RLG00000015373

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016251
Physical Location & Seq
Reverse (-)
65180139 .. 65183076
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015373

Sequence Viewer

Length: 702 bp
ATGGTTGCAGCTGTTTTTAGGGATCATTCAAGTGATTCAACTTTGGCTTTGTGCAGACCTGGAGACGAGAGCCGGACTATTCTCCTAGAGGTACCAGGCCTTGAAACCAGCAACTATTTCGATGATATATTATCTTCTTCTGGTAACGACCATGATGATGGTGAAGTCAGTGAAGATGATAATGTTGATCAGGCCAATGGAGATGTTGAAGATGATAATGAATACATTAACAACGTAGAAGCCAATGAAGATGCAAGGGAAGGCCCTTCCTTTGTGCTTAAAACTCCTTCTCCAACACTTGTTAATGGTGTGGCTAATAATGTTGTGGAGGAGGTTATTGTCCATGATAAGGTAGATGTGGGAAATAAGATAGTAATGGAGGGACCTACTGCTCCAATTGTTGATAACACTTGTGCTCCAGATGTTGAGAAAGCCACTAGTCAAGCTGTTGTGCACGCTATTAATCCAATTATTGAGCAAGTTATTGAGGAAGCTCGAGTTCAAAACTTTCTTGTTGCTGAGAATGTCGCGGATCACCAGGTTCTTGTTGCGCAGGCTATTGATAATGACTCGAATACTGGGAATGAGTTTTCTGGCAGCGATATTGAATCTGATGGCTCAAGTCTTGAGTCTTCTTTCCAATTGAGAATTGGTATGATGAAACAGAGCGTGTATCTGAGACTCAAGAGTTTACTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.2

Weight (kDa)

4.1

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 552
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 91
AccII CGCG 1 cut(s) 530
AciI CCGC 1 cut(s) 530
AclWI GGATC 2 cut(s) 30, 540
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 6 cut(s) 30, 39, 104, 209, 503, 608
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 3 cut(s) 58, 94, 537
AluBI AGCT 3 cut(s) 11, 446, 494
AluI AGCT 3 cut(s) 11, 446, 494
Alw21I GWGCWC 2 cut(s) 418, 456
Alw26I GTCTC 2 cut(s) 57, 673
Alw44I GTGCAC 1 cut(s) 452
AlwI GGATC 2 cut(s) 30, 540
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 3 cut(s) 97, 192, 262
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 8, 597
AseI ATTAAT 1 cut(s) 462
Asp718I GGTACC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 263, 383
AsuHPI GGTGA 2 cut(s) 173, 527
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 418, 456
BbvI GCAGC 2 cut(s) 20, 609
BccI CCATC 2 cut(s) 152, 608
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 3 cut(s) 60, 96, 539
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 57, 673
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 2 cut(s) 86, 438
BisI GCNGC 2 cut(s) 9, 598
BlsI GCNGC 2 cut(s) 10, 599
Bme1390I CCNGG 3 cut(s) 60, 96, 539
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 263, 383
BmiI GGNNCC 2 cut(s) 93, 384
BmrFI CCNGG 3 cut(s) 60, 96, 539
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 624
BpmI CTGGAG 2 cut(s) 81, 402
BpuEI CTTGAG 3 cut(s) 604, 647, 668
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 400, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 583
BseBI CCWGG 3 cut(s) 60, 96, 539
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 510, 668, 686
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 2 cut(s) 20, 609
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 3 cut(s) 99, 194, 264
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 418, 456
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 57, 673
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 3 cut(s) 99, 194, 264
BsoBI CYCGRG 1 cut(s) 495
Bsp1286I GDGCHC 2 cut(s) 418, 456
Bsp143I GATC 3 cut(s) 22, 187, 532
BspACI CCGC 1 cut(s) 530
BspANI GGCC 3 cut(s) 99, 194, 264
BspCNI CTCAG 3 cut(s) 511, 669, 687
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 2 cut(s) 93, 384
BspPI GGATC 2 cut(s) 30, 540
BspT107I GGYRCC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 583
BssMI GATC 3 cut(s) 22, 187, 532
Bst2UI CCWGG 3 cut(s) 60, 96, 539
BstC8I GCNNGC 2 cut(s) 456, 555
BstDEI CTNAG 3 cut(s) 519, 677, 695
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 3 cut(s) 25, 190, 535
BstMAI GTCTC 2 cut(s) 57, 673
BstMBI GATC 3 cut(s) 22, 187, 532
BstNI CCWGG 3 cut(s) 60, 96, 539
BstSCI CCNGG 3 cut(s) 58, 94, 537
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 20, 609
BstV2I GAAGAC 1 cut(s) 624
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 99, 194, 264
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 456, 555
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 263, 383
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 152, 344
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 3 cut(s) 519, 677, 695
DpnI GATC 3 cut(s) 24, 189, 534
DpnII GATC 3 cut(s) 22, 187, 532
Eco147I AGGCCT 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 495
EcoO109I RGGNCCY 2 cut(s) 263, 383
EcoRII CCWGG 3 cut(s) 58, 94, 537
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 155, 347
FaiI YATR 4 cut(s) 128, 153, 345, 656
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 151, 343
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 9, 598
Fsp4HI GCNGC 2 cut(s) 9, 598
FspBI CTAG 2 cut(s) 86, 438
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 1 cut(s) 552
GluI GCNGC 2 cut(s) 9, 598
GsuI CTGGAG 2 cut(s) 81, 402
HaeIII GGCC 3 cut(s) 99, 194, 264
HapII CCGG 1 cut(s) 73
HhaI GCGC 1 cut(s) 553
Hin1II CATG 2 cut(s) 155, 347
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HinfI GANTC 5 cut(s) 35, 569, 608, 629, 681
HpaII CCGG 1 cut(s) 73
HphI GGTGA 2 cut(s) 173, 527
Hpy166II GTNNAC 2 cut(s) 454, 692
Hpy188I TCNGA 2 cut(s) 613, 678
Hpy188III TCNNGA 3 cut(s) 419, 626, 685
Hpy8I GTNNAC 2 cut(s) 454, 692
HpyAV CCTTC 3 cut(s) 254, 276, 297
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 8, 54, 254, 454
HpyF3I CTNAG 3 cut(s) 519, 677, 695
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 2 cut(s) 155, 347
HspAI GCGC 1 cut(s) 551
KpnI GGTACC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 22, 187, 532
LmnI GCTCC 2 cut(s) 397, 421
Lsp1109I GCAGC 2 cut(s) 20, 609
LweI GCATC 1 cut(s) 241
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 2 cut(s) 86, 438
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 24, 189, 534
MboI GATC 3 cut(s) 22, 187, 532
MboII GAAGA 6 cut(s) 126, 129, 185, 221, 260, 624
MfeI CAATTG 2 cut(s) 396, 641
MhlI GDGCHC 2 cut(s) 418, 456
MluCI AATT 4 cut(s) 396, 468, 641, 648
MlyI GAGTC 3 cut(s) 563, 638, 675
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 6 cut(s) 82, 322, 325, 373, 481, 690
MseI TTAA 4 cut(s) 228, 279, 303, 462
MslI CAYNNNNRTG 2 cut(s) 30, 156
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 60, 96, 539
MunI CAATTG 2 cut(s) 396, 641
MvaI CCWGG 3 cut(s) 60, 96, 539
MvnI CGCG 1 cut(s) 530
NdeII GATC 3 cut(s) 22, 187, 532
NlaIII CATG 2 cut(s) 155, 347
NlaIV GGNNCC 2 cut(s) 93, 384
NsbI TGCGCA 1 cut(s) 552
PaeR7I CTCGAG 1 cut(s) 495
PceI AGGCCT 1 cut(s) 99
PfeI GAWTC 2 cut(s) 35, 608
PkrI GCNGC 2 cut(s) 10, 599
PleI GAGTC 3 cut(s) 563, 637, 675
PpsI GAGTC 3 cut(s) 563, 637, 675
PpuMI RGGWCCY 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 58, 94, 537
PspGI CCWGG 3 cut(s) 58, 94, 537
PspN4I GGNNCC 2 cut(s) 93, 384
PspPI GGNCC 2 cut(s) 263, 383
PspPPI RGGWCCY 1 cut(s) 383
PspXI VCTCGAGB 1 cut(s) 495
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 2 cut(s) 30, 156
SaqAI TTAA 4 cut(s) 228, 279, 303, 462
SatI GCNGC 2 cut(s) 9, 598
Sau3AI GATC 3 cut(s) 22, 187, 532
Sau96I GGNCC 2 cut(s) 263, 383
SchI GAGTC 3 cut(s) 563, 638, 675
ScrFI CCNGG 3 cut(s) 60, 96, 539
SduI GDGCHC 2 cut(s) 418, 456
SexAI ACCWGGT 1 cut(s) 537
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 495
SmiMI CAYNNNNRTG 2 cut(s) 30, 156
SmlI CTYRAG 4 cut(s) 495, 619, 626, 683
SmoI CTYRAG 4 cut(s) 495, 619, 626, 683
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 4 cut(s) 396, 468, 641, 648
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 1 cut(s) 530
SspMI CTAG 2 cut(s) 86, 438
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 58, 94, 537
TaiI ACGT 1 cut(s) 237
TaqI TCGA 3 cut(s) 120, 496, 572
TasI AATT 4 cut(s) 396, 468, 641, 648
TfiI GAWTC 2 cut(s) 35, 608
Tru1I TTAA 4 cut(s) 228, 279, 303, 462
Tru9I TTAA 4 cut(s) 228, 279, 303, 462
TscAI CASTG 1 cut(s) 175
TseI GCWGC 2 cut(s) 8, 597
TspDTI ATGAA 3 cut(s) 234, 261, 674
TspRI CASTG 1 cut(s) 175
VneI GTGCAC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 383
VspI ATTAAT 1 cut(s) 462
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 495
XspI CTAG 2 cut(s) 86, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.