Rh4BG134000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016251
Physical Location & Seq
Forward (+)
22508554 .. 22514983
6430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG134000.1

Sequence Viewer

Length: 375 bp
ATGTGGCTCCAGATCTGCTTCACGGTCTCGGCGCGAGAGCACTCAGGGGCGCCGCCGAGGAAGCTGCCGAGAGCTGGAGAGATCGGAGTCGGCTTCAGAATGGCAGCGTTCCTGTTGACGTTTCTCTTGGGCTTGATCACATCGGCATCGGCGTCTGCTTTGGGCTTCGCCTTCCCCTTTGATTTTGGTGCGGCGGCGGCGACCTTGACGGCGGTTCCAGCAGTGGATGTGGAGGACTTGGCCGGCAGTGGGAAGAGAAGAACGAGGACCTTGGTGGTGGTCTGGAAGAGAGAGGGGGGAGGTAAAGAAGGAGGCTGGAATGCGCATGATGTAACTTACCGCCTAGACAGACGTATCCCAGCTGCACCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.23

Weight (kDa)

10.15

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 49
AccII CGCG 1 cut(s) 34
AciI CCGC 6 cut(s) 53, 191, 194, 197, 212, 340
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 50, 152
AfiI CCNNNNNNNGG 2 cut(s) 74, 249
AluBI AGCT 3 cut(s) 64, 74, 362
AluI AGCT 3 cut(s) 64, 74, 362
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 31
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 3 cut(s) 64, 104, 362
AspLEI GCGC 3 cut(s) 34, 52, 325
AspS9I GGNCC 1 cut(s) 267
AvaII GGWCC 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 337, 370
BanI GGYRCC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 51, 116, 349
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 53
BfuI GTATCC 1 cut(s) 365
BglII AGATCT 1 cut(s) 12
BisI GCNGC 7 cut(s) 53, 65, 105, 192, 195, 198, 363
BlsI GCNGC 7 cut(s) 54, 66, 106, 193, 196, 199, 364
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 8, 51, 216
BmsI GCATC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 96
BsaHI GRCGYC 2 cut(s) 50, 152
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 56, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 249
Bse118I RCCGGY 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 56, 270
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 74, 249
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 51, 116, 349
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 74, 249
BsmAI GTCTC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 12, 81, 135
BspACI CCGC 6 cut(s) 53, 191, 194, 197, 212, 340
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 56
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 8, 51, 216
BspT107I GGYRCC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 56, 270
BssMI GATC 3 cut(s) 12, 81, 135
BssNI GRCGYC 2 cut(s) 50, 152
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 248, 281
BstACI GRCGYC 2 cut(s) 50, 152
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 3 cut(s) 34, 52, 325
BstKTI GATC 3 cut(s) 15, 84, 138
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 3 cut(s) 12, 81, 135
BstMWI GCNNNNNNNGC 3 cut(s) 61, 197, 218
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 51, 116, 349
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 2 cut(s) 228, 253
BtsIMutI CAGTG 2 cut(s) 228, 253
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 3 cut(s) 34, 52, 325
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 1 cut(s) 141
CviAII CATG 1 cut(s) 326
CviJI RGCY 9 cut(s) 7, 64, 74, 93, 132, 165, 242, 315, 362
CviKI_1 RGCY 9 cut(s) 7, 64, 74, 93, 132, 165, 242, 315, 362
DdeI CTNAG 1 cut(s) 43
DinI GGCGCC 1 cut(s) 51
DpnI GATC 3 cut(s) 14, 83, 137
DpnII GATC 3 cut(s) 12, 81, 135
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 248, 281
EarI CTCTTC 2 cut(s) 248, 281
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 329
FaiI YATR 1 cut(s) 327
FatI CATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 7 cut(s) 53, 65, 105, 192, 195, 198, 363
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 7 cut(s) 53, 65, 105, 192, 195, 198, 363
FspAI RTGCGCAY 1 cut(s) 324
FspBI CTAG 1 cut(s) 344
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 3 cut(s) 33, 51, 324
GluI GCNGC 7 cut(s) 53, 65, 105, 192, 195, 198, 363
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 141
HhaI GCGC 3 cut(s) 34, 52, 325
Hin1I GRCGYC 2 cut(s) 50, 152
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 3 cut(s) 32, 50, 323
HinP1I GCGC 3 cut(s) 32, 50, 323
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 86, 98
Hpy188III TCNNGA 2 cut(s) 10, 283
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 181, 302
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 119, 352
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 197, 218
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 119, 352
Hsp92I GRCGYC 2 cut(s) 50, 152
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 3 cut(s) 32, 50, 323
KasI GGCGCC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 12, 81, 135
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 8 cut(s) 23, 30, 60, 125, 231, 256, 268, 301
Lsp1109I GCAGC 3 cut(s) 51, 116, 349
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 119, 352
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 14, 83, 137
MboI GATC 3 cut(s) 12, 81, 135
MboII GAAGA 3 cut(s) 265, 270, 298
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 370
Mly113I GGCGCC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 6 cut(s) 51, 226, 258, 286, 293, 305
MroNI GCCGGC 1 cut(s) 242
MseI TTAA 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 325
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 61, 197, 218
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 1 cut(s) 50
NdeII GATC 3 cut(s) 12, 81, 135
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 3 cut(s) 8, 51, 216
NmeAIII GCCGAG 3 cut(s) 8, 81, 93
NsbI TGCGCA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PctI GAATGC 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 244
PkrI GCNGC 7 cut(s) 54, 66, 106, 193, 196, 199, 364
PleI GAGTC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 8, 51, 216
PspPI GGNCC 1 cut(s) 267
PspPPI RGGWCCY 1 cut(s) 267
PsuI RGATCY 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 362
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 7 cut(s) 53, 65, 105, 192, 195, 198, 363
Sau3AI GATC 3 cut(s) 12, 81, 135
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 42
SetI ASST 8 cut(s) 66, 76, 122, 206, 272, 304, 355, 364
SfaNI GCATC 1 cut(s) 155
SfoI GGCGCC 1 cut(s) 51
SinI GGWCC 1 cut(s) 267
Sse9I AATT 1 cut(s) 370
SsiI CCGC 6 cut(s) 53, 191, 194, 197, 212, 340
SspDI GGCGCC 1 cut(s) 49
SspMI CTAG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 2 cut(s) 122, 355
TasI AATT 1 cut(s) 370
TauI GCSGC 4 cut(s) 55, 194, 197, 200
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TscAI CASTG 2 cut(s) 228, 253
TseI GCWGC 3 cut(s) 64, 104, 362
TspRI CASTG 2 cut(s) 228, 253
VpaK11BI GGWCC 1 cut(s) 267
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.