RLG00000034894

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016251
Physical Location & Seq
Reverse (-)
56673034 .. 56674185
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034894

Sequence Viewer

Length: 351 bp
ATGAATTTCTGGGAAGCTGTAGTAGCTGCATTTTGTTATACCACAATAGTAGACATTATAAGAATTGATGGTGTGGCTAATAATGTTGTGGAGGAGGTTATTGTCCGTGACAAGGTAGATGTGCAAAATAAGGTAGTAATGGAGGGACCTACTGCTCCAATTGTTGATAACACTTGTGCTCGAGATGTTGAGAAAGCTGCTAGTCAAGCTGTTGTGCACGCTATTAATCCAATTATTGAGCAAGTTATTGAGGAAGCTCGAGTTCAAAACATTCTTGTTGCTGAGAATGTCACGGATCACCAGGTTCTTATTGTGCAGGCTATTGATACTGACTCGAATACTATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.76

Weight (kDa)

4.36

Isoelectric Point (pI)

21.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccI GTMKAC 1 cut(s) 51
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 5 cut(s) 17, 26, 197, 209, 257
AluI AGCT 5 cut(s) 17, 26, 197, 209, 257
Alw21I GWGCWC 2 cut(s) 181, 219
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 2 cut(s) 180, 258
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 26, 197
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 2 cut(s) 180, 258
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 181, 219
BbvI GCAGC 2 cut(s) 13, 184
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 302
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 27, 198
BlsI GCNGC 2 cut(s) 28, 199
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 2 cut(s) 180, 258
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 13, 184
BsgI GTGCAG 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 181, 219
BsiHKCI CYCGRG 2 cut(s) 180, 258
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 159
BsoBI CYCGRG 2 cut(s) 180, 258
Bsp1286I GDGCHC 2 cut(s) 181, 219
Bsp143I GATC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 303
BssMI GATC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 219, 318
BstDEI CTNAG 1 cut(s) 282
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 23, 206
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 13, 184
Cac8I GCNNGC 2 cut(s) 219, 318
Cfr13I GGNCC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 300
CviJI RGCY 7 cut(s) 17, 26, 77, 197, 209, 257, 320
CviKI_1 RGCY 7 cut(s) 17, 26, 77, 197, 209, 257, 320
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 146
Eco88I CYCGRG 2 cut(s) 180, 258
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 300
FaiI YATR 3 cut(s) 39, 59, 344
FaqI GGGAC 1 cut(s) 159
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 27, 198
Fsp4HI GCNGC 2 cut(s) 27, 198
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 27, 198
HinfI GANTC 1 cut(s) 332
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 52, 217
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 2 cut(s) 52, 217
HpyCH4V TGCA 4 cut(s) 29, 124, 217, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 206
HpyF3I CTNAG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 287, 302, 314
Lsp1109I GCAGC 2 cut(s) 13, 184
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 107, 289
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 181, 219
MluCI AATT 4 cut(s) 4, 63, 159, 231
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 4 cut(s) 85, 88, 136, 244
MseI TTAA 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 23, 206
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 107, 289
PaeR7I CTCGAG 2 cut(s) 180, 258
PkrI GCNGC 2 cut(s) 28, 199
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 146
PshBI ATTAAT 1 cut(s) 225
PsiI TTATAA 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 258
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 27, 198
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 181, 219
SexAI ACCWGGT 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 18
Sfr274I CTCGAG 2 cut(s) 180, 258
SinI GGWCC 1 cut(s) 146
SlaI CTCGAG 2 cut(s) 180, 258
SmlI CTYRAG 2 cut(s) 180, 258
SmoI CTYRAG 2 cut(s) 180, 258
Sse9I AATT 4 cut(s) 4, 63, 159, 231
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 300
TaqI TCGA 3 cut(s) 181, 259, 335
TasI AATT 4 cut(s) 4, 63, 159, 231
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseFI GTSAC 2 cut(s) 107, 289
TseI GCWGC 2 cut(s) 26, 197
Tsp45I GTSAC 2 cut(s) 107, 289
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 95, 308
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 146
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 4
XhoI CTCGAG 2 cut(s) 180, 258
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.