Rroxscaffold_5G00360160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016251
Physical Location & Seq
Forward (+)
40477322 .. 40477830
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360160.1

Sequence Viewer

Length: 288 bp
ATGGCGATGGCGGCGGAGTCCTTGGCTAAGATCGGGAAGATCGGCTTCGAATGCCGGCGTTCTGTTGACGTTTCTCTTGGGCTTGATCTCGTCGGCGTCGCTTACTCGAAGACACCAAGTCCTATGATGAGTAAAAGGTTCTTGGGCTTCGCCTTTGCCTTCGATTTTGGTGCAACGGCGGCGACCTTGACCGCGGTTCCGGCGGTGGATGTTAAGGACTTGGCGGCGGTGGGAAGAAGAACAGGGACCTTGGTGGTGGCCTGGAAGAGAGAGGGGGAGGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.08

Weight (kDa)

9.36

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 8 cut(s) 11, 14, 179, 192, 194, 203, 224, 227
AcyI GRCGYC 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 260
AoxI GGCC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 246
AsuII TTCGAA 1 cut(s) 48
AvaII GGWCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 262
BisI GCNGC 3 cut(s) 12, 180, 225
BlsI GCNGC 3 cut(s) 13, 181, 226
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 246
BmeRI GACNNNNNGTC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 2 cut(s) 198, 247
BmrFI CCNGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 21, 192, 249
Bse118I RCCGGY 1 cut(s) 54
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 21, 192, 249
BseGI GGATG 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 260
BsiSI CCGG 2 cut(s) 55, 200
BslFI GGGAC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 48
Bsp143I GATC 3 cut(s) 30, 39, 85
BspACI CCGC 8 cut(s) 11, 14, 179, 192, 194, 203, 224, 227
BspANI GGCC 1 cut(s) 260
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 198, 247
BspT104I TTCGAA 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 21, 192, 249
BssMI GATC 3 cut(s) 30, 39, 85
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 21, 249
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 3 cut(s) 33, 42, 88
BstMBI GATC 3 cut(s) 30, 39, 85
BstMWI GCNNNNNNNGC 4 cut(s) 11, 51, 179, 200
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 246
Cfr42I CCGCGG 1 cut(s) 195
CseI GACGC 1 cut(s) 85
CviJI RGCY 5 cut(s) 26, 45, 82, 147, 260
CviKI_1 RGCY 5 cut(s) 26, 45, 82, 147, 260
DdeI CTNAG 1 cut(s) 27
DpnI GATC 3 cut(s) 32, 41, 87
DpnII GATC 3 cut(s) 30, 39, 85
DriI GACNNNNNGTC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 260
Eam1105I GACNNNNNGTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 21, 249
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 21, 249
ErhI CCWWGG 2 cut(s) 21, 249
FaiI YATR 1 cut(s) 125
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 12, 180, 225
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 12, 180, 225
GluI GCNGC 3 cut(s) 12, 180, 225
HaeIII GGCC 1 cut(s) 260
HapII CCGG 2 cut(s) 55, 200
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 55, 200
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 2 cut(s) 95, 101
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 51, 179, 200
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 96
KroI GCCGGC 1 cut(s) 54
KroNI GCCGGC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 195
Kzo9I GATC 3 cut(s) 30, 39, 85
LpnPI CCDG 5 cut(s) 68, 213, 228, 247, 274
MaeII ACGT 1 cut(s) 69
MalI GATC 3 cut(s) 32, 41, 87
MboI GATC 3 cut(s) 30, 39, 85
MboII GAAGA 5 cut(s) 49, 121, 246, 249, 277
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 265, 271
MroNI GCCGGC 1 cut(s) 54
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 55, 200
MspR9I CCNGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 4 cut(s) 11, 51, 179, 200
NaeI GCCGGC 1 cut(s) 56
NdeII GATC 3 cut(s) 30, 39, 85
NgoMIV GCCGGC 1 cut(s) 54
NlaIV GGNNCC 2 cut(s) 198, 247
NspV TTCGAA 1 cut(s) 48
PctI GAATGC 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 13, 181, 226
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 198, 247
PspPI GGNCC 1 cut(s) 246
PspPPI RGGWCCY 1 cut(s) 246
SacII CCGCGG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 12, 180, 225
Sau3AI GATC 3 cut(s) 30, 39, 85
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 262
SetI ASST 4 cut(s) 72, 140, 188, 251
Sfr303I CCGCGG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 195
SinI GGWCC 1 cut(s) 246
SsiI CCGC 8 cut(s) 11, 14, 179, 192, 194, 203, 224, 227
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 21, 249
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 48, 107, 162
TauI GCSGC 3 cut(s) 14, 182, 227
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.