Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016251

Physical Location & Seq

Genomic Coordinates Forward (+)

16639950 .. 16640369

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG186500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGGACCTACTGCTCCAATTATTGATAACACTTGTGCTCCAAATGTTGAGAAAGCTACTAGTCAAGCTGTTGTGCACGCTATTAATCCAATTGTTAAGCAAGCTGTTGAGGAAGCTCGAGTTCAAAACGTTCTTGTTGCTGAGGATGTCTCAGATCACCAAGTTCTTGTTGCGCAGGCTATTGATAATGACTCGAATAATGGGAATGAGCTCTCTGGCAGCGATATTGAATCTAATGGCTCAAGTCTTGAGTCTTCTGTTCCACTTGAGATTGGTATGATGAAACAGGGCATGTATCGTGAGATTCAAGAGTTTACTGAGGTAATTTCCAAGGCACGTCGTAGGTCTATGAGGAAGGCAGCAAACACAGAGAGCCAGCAAGCTTATATTAGTCATTCTAAGGGTGCTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.0

Weight (kDa)

4.89

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016251)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01561
rosa_laevigata	RLG00000015373 RLG00000034894
rosa_roxburghii	Rroxscaffold_2G00119600 Rroxscaffold_5G00360160 Rroxscaffold_7G00165270
rosa_samantha	Rh2BG189500 Rh2DG186500 Rh4AG366600 Rh4BG134000 Rh6AG502800 Rh6CG015100 Rh6CG015200 Rh6DG016300 Rh6DG016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AclI	AACGTT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	128, 233, 311
AhlI	ACTAGT	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	341
AluBI	AGCT	6 cut(s)	59, 71, 107, 119, 214, 386
AluI	AGCT	6 cut(s)	59, 71, 107, 119, 214, 386
Alw21I	GWGCWC	3 cut(s)	43, 81, 216
Alw26I	GTCTC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	222, 362
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	3 cut(s)	43, 81, 216
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	234, 374
BcoDI	GTCTC	1 cut(s)	157
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	223, 363
BlsI	GCNGC	2 cut(s)	224, 364
Bme18I	GGWCC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	3 cut(s)	229, 272, 290
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	135, 168, 312
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	234, 374
BsiHKAI	GWGCWC	3 cut(s)	43, 81, 216
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	43, 81, 216
Bsp143I	GATC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	136, 167, 313
BspLI	GGNNCC	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	333
BstC8I	GCNNGC	5 cut(s)	81, 105, 180, 380, 384
BstDEI	CTNAG	4 cut(s)	144, 154, 321, 402
BstF5I	GGATG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	234, 374
BstV2I	GAAGAC	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	5 cut(s)	81, 105, 180, 380, 384
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	9 cut(s)	59, 71, 107, 119, 182, 214, 243, 378, 386
CviKI_1	RGCY	9 cut(s)	59, 71, 107, 119, 182, 214, 243, 378, 386
DdeI	CTNAG	4 cut(s)	144, 154, 321, 402
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	298
FaiI	YATR	4 cut(s)	281, 296, 353, 390
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	223, 363
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	223, 363
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	223, 363
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	4 cut(s)	194, 233, 254, 307
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	79, 318
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	251, 302, 311
Hpy8I	GTNNAC	2 cut(s)	79, 318
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	132, 340
HpyCH4V	TGCA	1 cut(s)	79
HpyF3I	CTNAG	4 cut(s)	144, 154, 321, 402
HpySE526I	ACGT	2 cut(s)	132, 340
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	22, 46
LpnPI	CCDG	4 cut(s)	164, 204, 275, 392
Lsp1109I	GCAGC	2 cut(s)	234, 374
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	132, 340
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	249
MfeI	CAATTG	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	43, 81, 216
MluCI	AATT	3 cut(s)	21, 93, 327
MlyI	GAGTC	2 cut(s)	188, 263
MnlI	CCTC	4 cut(s)	106, 139, 316, 348
MseI	TTAA	2 cut(s)	87, 99
MunI	CAATTG	1 cut(s)	93
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	9
NsbI	TGCGCA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	233, 307
PkrI	GCNGC	2 cut(s)	224, 364
PleI	GAGTC	2 cut(s)	188, 262
PpsI	GAGTC	2 cut(s)	188, 262
PpuMI	RGGWCCY	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	87
Psp124BI	GAGCTC	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	8
PspPPI	RGGWCCY	1 cut(s)	8
PspXI	VCTCGAGB	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	87, 99
SatI	GCNGC	2 cut(s)	223, 363
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	2 cut(s)	188, 263
SduI	GDGCHC	3 cut(s)	43, 81, 216
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	4 cut(s)	120, 244, 251, 269
SmoI	CTYRAG	4 cut(s)	120, 244, 251, 269
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	3 cut(s)	21, 93, 327
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	2 cut(s)	135, 343
TaqI	TCGA	2 cut(s)	121, 197
TasI	AATT	3 cut(s)	21, 93, 327
TfiI	GAWTC	2 cut(s)	233, 307
Tru1I	TTAA	2 cut(s)	87, 99
Tru9I	TTAA	2 cut(s)	87, 99
TseI	GCWGC	2 cut(s)	222, 362
TspDTI	ATGAA	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	87
XceI	RCATGY	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.