Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016251

Physical Location & Seq

Genomic Coordinates Reverse (-)

67625536 .. 67626265

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG502800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATCGCCTCCGAAACGAGACGATGATTGAGGTGGATGTGCTTAATCGTATTGCCAAGAACGATATTAGCAACTCATGTTGTGTGCAGATTCGCGATTGGTTTGATTACGGCAATCACATATGCATGGTTTTGGAGCTTGATGTGGCTCCAAATCTGCTTAAAGTCCTCGGCGCGAGAGGACTCAGGGTGCCGCCGAGGAAGCTGCCGAGAGCTGGAGAGATCGGAGTCGGCTTCAAAATGCCAGCGTTCCTGTTGACGTTTCTCTTGGGCTTGATTGCCTCGGCGTCTGCTTTGGGTTTCGCCTTCGCCTTCGATTTTGGTGCGGCGGCGGCGACCTTGACGGCAGTTCCAGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

12.99

Weight (kDa)

7.73

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016251)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01561
rosa_laevigata	RLG00000015373 RLG00000034894
rosa_roxburghii	Rroxscaffold_2G00119600 Rroxscaffold_5G00360160 Rroxscaffold_7G00165270
rosa_samantha	Rh2BG189500 Rh2DG186500 Rh4AG366600 Rh4BG134000 Rh6AG502800 Rh6CG015100 Rh6CG015200 Rh6DG016300 Rh6DG016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	2 cut(s)	96, 176
AciI	CCGC	4 cut(s)	194, 326, 329, 332
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	3 cut(s)	139, 205, 215
AluI	AGCT	3 cut(s)	139, 205, 215
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	192
BceAI	ACGGC	2 cut(s)	127, 360
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 305, 339
BcoDI	GTCTC	1 cut(s)	14
BisI	GCNGC	5 cut(s)	194, 206, 327, 330, 333
BlsI	GCNGC	5 cut(s)	195, 207, 328, 331, 334
BmiI	GGNNCC	2 cut(s)	150, 192
BpmI	CTGGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	169, 197, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	169, 197, 282
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	2 cut(s)	96, 176
BshNI	GGYRCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	4, 222
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	4 cut(s)	194, 326, 329, 332
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	96, 176
BspLI	GGNNCC	2 cut(s)	150, 192
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	190
BssECI	CCNNGG	3 cut(s)	169, 197, 282
BssMI	GATC	2 cut(s)	4, 222
BssNI	GRCGYC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	96, 176
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	7, 225
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	4, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 332, 353
BstUI	CGCG	2 cut(s)	96, 176
BstV1I	GCAGC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	176
CseI	GACGC	1 cut(s)	276
CviAII	CATG	2 cut(s)	78, 127
CviJI	RGCY	6 cut(s)	139, 149, 205, 215, 234, 273
CviKI_1	RGCY	6 cut(s)	139, 149, 205, 215, 234, 273
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	6, 224
DpnII	GATC	2 cut(s)	4, 222
EcoT22I	ATGCAT	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	2 cut(s)	81, 130
FaiI	YATR	4 cut(s)	79, 122, 124, 128
FatI	CATG	2 cut(s)	77, 126
FauNDI	CATATG	1 cut(s)	122
Fnu4HI	GCNGC	5 cut(s)	194, 206, 327, 330, 333
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	194, 206, 327, 330, 333
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	5 cut(s)	194, 206, 327, 330, 333
GsuI	CTGGAG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	81, 130
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	91, 183, 228
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	14, 227
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	316, 322
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	88, 126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 332, 353
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	81, 130
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	4, 222
LmnI	GCTCC	2 cut(s)	136, 154
LpnPI	CCDG	4 cut(s)	172, 201, 258, 266
Lsp1109I	GCAGC	1 cut(s)	192
MaeII	ACGT	1 cut(s)	260
MalI	GATC	2 cut(s)	6, 224
MboI	GATC	2 cut(s)	4, 222
MlyI	GAGTC	2 cut(s)	177, 237
MnlI	CCTC	6 cut(s)	20, 25, 173, 179, 192, 292
Mph1103I	ATGCAT	1 cut(s)	128
MseI	TTAA	3 cut(s)	45, 162, 361
MslI	CAYNNNNRTG	1 cut(s)	125
MvnI	CGCG	2 cut(s)	96, 176
MwoI	GCNNNNNNNGC	3 cut(s)	202, 332, 353
NdeI	CATATG	1 cut(s)	122
NdeII	GATC	2 cut(s)	4, 222
NlaIII	CATG	2 cut(s)	81, 130
NlaIV	GGNNCC	2 cut(s)	150, 192
NmeAIII	GCCGAG	4 cut(s)	150, 222, 234, 263
NruI	TCGCGA	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	195, 207, 328, 331, 334
PleI	GAGTC	2 cut(s)	177, 236
PpsI	GAGTC	2 cut(s)	177, 236
PspN4I	GGNNCC	2 cut(s)	150, 192
RruI	TCGCGA	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	45, 162, 361
SatI	GCNGC	5 cut(s)	194, 206, 327, 330, 333
Sau3AI	GATC	2 cut(s)	4, 222
SchI	GAGTC	2 cut(s)	177, 237
SetI	ASST	6 cut(s)	36, 141, 207, 217, 263, 341
SmiMI	CAYNNNNRTG	1 cut(s)	125
SsiI	CCGC	4 cut(s)	194, 326, 329, 332
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	315
TauI	GCSGC	4 cut(s)	196, 329, 332, 335
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	45, 162, 361
Tru9I	TTAA	3 cut(s)	45, 162, 361
TseI	GCWGC	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.